Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 3.1e-84 315.1 156 100.0
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 7.2e-33 144.4 122 65.6
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 4.6e-32 141.7 100 72.0
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.4e-31 140.2 100 71.0
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 3.0e-31 139.0 102 69.6
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 3.9e-31 138.7 101 69.3
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 3.9e-31 138.7 103 66.0
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.5e-30 136.7 103 68.0
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 1.5e-30 136.7 100 69.0
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.5e-30 136.0 103 68.0
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 2.5e-30 136.0 100 67.0
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 3.3e-30 135.6 97 69.1
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 3.3e-30 135.6 106 65.1
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 3.3e-30 135.6 100 64.0
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 4.3e-30 135.2 105 63.8
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 4.3e-30 135.2 104 68.3
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 9.7e-30 134.0 100 67.0
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 9.7e-30 134.0 100 67.0
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 9.7e-30 134.0 108 64.8
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 9.7e-30 134.0 100 68.0
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 9.7e-30 134.0 106 63.2
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 9.7e-30 134.0 100 67.0
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 1.3e-29 133.7 100 67.0
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 1.3e-29 133.7 95 69.5
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.3e-29 133.7 103 67.0
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 1.3e-29 133.7 101 65.3
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.3e-29 133.7 101 64.4
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.3e-29 133.7 100 66.0
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 1.7e-29 133.3 100 71.0
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.7e-29 133.3 85 80.0
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 1.7e-29 133.3 106 63.2
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.7e-29 133.3 105 63.8
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 2.2e-29 132.9 95 70.5
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 2.2e-29 132.9 100 67.0
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 2.2e-29 132.9 103 65.0
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.8e-29 132.5 100 65.0
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.8e-29 132.5 97 67.0
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.8e-29 132.5 100 65.0
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.8e-29 132.5 100 65.0
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 2.8e-29 132.5 97 67.0
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 3.7e-29 132.1 93 69.9
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 3.7e-29 132.1 97 69.1
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 4.8e-29 131.7 95 67.4
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 4.8e-29 131.7 113 59.3
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 4.8e-29 131.7 105 64.8
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 4.8e-29 131.7 100 65.0
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 4.8e-29 131.7 97 69.1
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 4.8e-29 131.7 100 67.0
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 4.8e-29 131.7 101 64.4
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 6.3e-29 131.3 97 69.1
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 6.3e-29 131.3 132 52.3
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 1.1e-28 130.6 93 68.8
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.1e-28 130.6 100 68.0
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.4e-28 130.2 89 73.0
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.4e-28 130.2 106 63.2
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 1.8e-28 129.8 100 64.0
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 2.4e-28 129.4 100 63.0
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.4e-28 129.4 105 63.8
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.4e-28 129.4 103 63.1
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.4e-28 129.4 103 63.1
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.4e-28 129.4 101 61.4
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 3.1e-28 129.0 100 69.0
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 3.1e-28 129.0 100 69.0
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 3.1e-28 129.0 116 59.5
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.1e-28 129.0 116 59.5
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 3.1e-28 129.0 106 59.4
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 3.1e-28 129.0 106 64.2
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 3.1e-28 129.0 106 64.2
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 4.1e-28 128.6 101 63.4
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 4.1e-28 128.6 99 64.6
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 4.1e-28 128.6 100 68.0
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.3e-28 128.3 103 62.1
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.3e-28 128.3 103 62.1
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 6.9e-28 127.9 101 64.4
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 6.9e-28 127.9 100 66.0
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 6.9e-28 127.9 100 62.0
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 9.1e-28 127.5 101 64.4
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 9.1e-28 127.5 103 63.1
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 9.1e-28 127.5 101 63.4
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 9.1e-28 127.5 101 63.4
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.5e-27 126.7 90 68.9
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.5e-27 126.7 103 63.1
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 1.5e-27 126.7 100 64.0
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.0e-27 126.3 101 61.4
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 3.4e-27 125.6 97 62.9
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 3.4e-27 125.6 101 60.4
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 3.4e-27 125.6 77 79.2
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 3.4e-27 125.6 95 64.2
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.5e-27 125.2 101 61.4
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 5.9e-27 124.8 76 77.6
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 5.9e-27 124.8 95 65.3
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 5.9e-27 124.8 91 70.3
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 7.7e-27 124.4 95 63.2
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 7.7e-27 124.4 95 64.2
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 7.7e-27 124.4 100 63.0
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.0e-26 124.0 97 64.9
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 1.0e-26 124.0 100 65.0
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 1.0e-26 124.0 93 65.6
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 1.0e-26 124.0 76 75.0
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.3e-26 123.6 101 62.4
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 1.7e-26 123.2 98 63.3
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 1.7e-26 123.2 106 58.5
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 2.2e-26 122.9 92 68.5
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 2.9e-26 122.5 100 65.0
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.9e-26 122.5 103 62.1
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 2.9e-26 122.5 91 65.9
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 2.9e-26 122.5 96 66.7
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 2.9e-26 122.5 103 61.2
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 2.9e-26 122.5 103 63.1
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.9e-26 122.5 99 60.6
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.8e-26 122.1 100 60.0
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 3.8e-26 122.1 93 65.6
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 3.8e-26 122.1 93 65.6
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 3.8e-26 122.1 107 58.9
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 5.0e-26 121.7 93 62.4
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 6.5e-26 121.3 76 76.3
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 1.1e-25 120.6 99 60.6
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 1.4e-25 120.2 99 60.6
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.4e-25 120.2 99 60.6
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 1.4e-25 120.2 90 66.7
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.9e-25 119.8 104 57.7
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 1.9e-25 119.8 99 59.6
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 1.9e-25 119.8 99 59.6
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 1.9e-25 119.8 99 59.6
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.9e-25 119.8 100 61.0
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.9e-25 119.8 76 73.7
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 1.9e-25 119.8 103 62.1
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 2.5e-25 119.4 97 62.9
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 2.5e-25 119.4 99 59.6
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 2.5e-25 119.4 97 59.8
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 3.2e-25 119.0 95 60.0
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 4.2e-25 118.6 96 62.5
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 4.2e-25 118.6 96 61.5
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 4.2e-25 118.6 95 60.0
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 7.2e-25 117.9 96 60.4
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 7.2e-25 117.9 96 60.4
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 7.2e-25 117.9 98 60.2
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 9.4e-25 117.5 91 64.8
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.6e-24 116.7 113 55.8
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 1.6e-24 116.7 92 63.0
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 2.7e-24 115.9 90 62.2
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 1.8e-23 113.2 98 55.1
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 2.6e-22 109.4 76 65.8
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 4.8e-21 105.1 85 56.5
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 6.3e-21 104.8 76 61.8
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 6.3e-21 104.8 80 58.8
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.4e-20 103.6 88 55.7
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.4e-20 103.6 85 55.3
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.5e-19 99.0 55 83.6
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 1.7e-18 96.7 96 51.0
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 1.6e-16 90.1 58 70.7
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 7.7e-11 71.2 68 51.5
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 7.7e-11 71.2 68 51.5
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 2.9e-10 69.3 68 51.5
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 8.0e-08 61.2 52 61.5
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 3.0e-07 59.3 49 61.2
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 3.0e-07 59.3 32 81.2
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 3.0e-07 59.3 32 81.2
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 5.2e-07 58.5 32 78.1
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 3.3e-06 55.8 28 89.3
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 3.3e-06 55.8 30 80.0
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 9.7e-06 54.3 32 78.1


User provided reference genes

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