Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 2.1e-122 442.6 252 100.0
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 3.7e-47 192.6 174 59.8
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 1.4e-46 190.7 174 59.2
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 1.4e-46 190.7 174 60.9
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 7.0e-46 188.3 174 59.2
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 7.0e-46 188.3 174 55.7
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 7.0e-46 188.3 164 59.1
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 9.1e-46 188.0 174 58.0
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 1.2e-45 187.6 164 60.4
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 1.6e-45 187.2 164 60.4
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.0e-45 186.8 155 63.2
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.0e-45 186.8 155 63.2
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 2.7e-45 186.4 176 55.7
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 2.7e-45 186.4 174 58.6
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 2.7e-45 186.4 174 57.5
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 3.5e-45 186.0 187 57.8
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 3.5e-45 186.0 186 56.5
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 4.5e-45 185.7 166 58.4
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 4.5e-45 185.7 164 57.9
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 5.9e-45 185.3 155 63.2
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.0e-44 184.5 174 58.0
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 1.7e-44 183.7 160 61.2
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.7e-44 183.7 164 59.1
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 1.7e-44 183.7 164 57.9
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.7e-44 183.7 172 57.6
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 2.2e-44 183.3 172 58.1
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 2.2e-44 183.3 164 57.9
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 2.2e-44 183.3 186 55.9
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.9e-44 183.0 164 59.8
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 2.9e-44 183.0 164 59.8
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 3.8e-44 182.6 172 58.1
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 3.8e-44 182.6 172 58.7
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 6.5e-44 181.8 174 57.5
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 6.5e-44 181.8 164 59.1
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 6.5e-44 181.8 172 57.6
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.1e-43 181.0 180 54.4
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.5e-43 180.6 164 58.5
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.5e-43 180.6 164 58.5
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.5e-43 180.6 181 55.2
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.9e-43 180.3 164 57.9
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 1.9e-43 180.3 164 56.1
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 2.5e-43 179.9 155 60.0
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.2e-43 179.5 164 57.3
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 3.2e-43 179.5 164 56.7
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 3.2e-43 179.5 155 60.6
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 3.2e-43 179.5 204 52.9
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 3.2e-43 179.5 175 56.6
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 4.2e-43 179.1 174 56.3
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 4.2e-43 179.1 164 56.7
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.2e-43 179.1 164 57.9
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.2e-43 179.1 164 57.9
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 5.5e-43 178.7 164 56.1
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.5e-43 178.7 155 60.6
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 5.5e-43 178.7 164 57.9
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 5.5e-43 178.7 164 58.5
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 5.5e-43 178.7 175 54.3
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 5.5e-43 178.7 172 55.8
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 7.2e-43 178.3 174 54.6
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 7.2e-43 178.3 155 59.4
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 7.2e-43 178.3 155 58.7
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 7.2e-43 178.3 164 56.7
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 7.2e-43 178.3 164 55.5
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 7.2e-43 178.3 164 55.5
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 9.4e-43 177.9 164 57.9
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 9.4e-43 177.9 164 57.9
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 9.4e-43 177.9 164 57.9
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 9.4e-43 177.9 164 57.9
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 9.4e-43 177.9 175 56.0
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.2e-42 177.6 155 60.6
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.2e-42 177.6 164 54.9
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 1.2e-42 177.6 175 55.4
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 1.6e-42 177.2 164 56.7
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.6e-42 177.2 164 56.1
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 1.6e-42 177.2 164 56.1
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.1e-42 176.8 176 53.4
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.1e-42 176.8 164 56.1
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 2.1e-42 176.8 164 56.7
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 2.1e-42 176.8 164 56.7
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 2.7e-42 176.4 164 56.1
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.7e-42 176.4 155 60.0
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 2.7e-42 176.4 164 56.7
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 2.7e-42 176.4 196 53.1
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 3.6e-42 176.0 174 56.3
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 3.6e-42 176.0 164 54.9
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 3.6e-42 176.0 175 54.9
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 4.7e-42 175.6 164 56.1
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 4.7e-42 175.6 166 54.8
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 8.0e-42 174.9 174 56.3
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 8.0e-42 174.9 204 52.5
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 8.0e-42 174.9 198 51.5
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.0e-41 174.5 164 55.5
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 1.0e-41 174.5 164 56.1
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 1.0e-41 174.5 174 54.6
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 1.4e-41 174.1 164 55.5
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.4e-41 174.1 164 56.1
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 1.4e-41 174.1 164 54.9
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.8e-41 173.7 164 55.5
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.8e-41 173.7 175 54.9
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.8e-41 173.7 172 55.8
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 2.3e-41 173.3 164 56.7
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 2.3e-41 173.3 155 58.1
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 2.3e-41 173.3 174 55.2
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.0e-41 172.9 155 58.7
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 3.0e-41 172.9 196 52.0
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 3.0e-41 172.9 204 51.0
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 3.0e-41 172.9 174 54.6
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 5.2e-41 172.2 206 51.9
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 6.8e-41 171.8 164 55.5
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 8.8e-41 171.4 156 57.7
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 8.8e-41 171.4 200 51.5
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 8.8e-41 171.4 164 53.7
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 1.2e-40 171.0 164 54.3
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 1.5e-40 170.6 164 56.1
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 2.0e-40 170.2 175 53.7
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 2.6e-40 169.9 200 49.0
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 2.6e-40 169.9 164 53.0
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 3.4e-40 169.5 175 53.7
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 4.4e-40 169.1 175 53.1
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 4.4e-40 169.1 175 53.1
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 7.5e-40 168.3 174 52.9
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 7.5e-40 168.3 175 52.6
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 7.5e-40 168.3 175 53.7
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 1.3e-39 167.5 204 50.0
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.3e-39 167.5 158 55.1
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 1.7e-39 167.2 175 52.6
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 1.7e-39 167.2 175 52.6
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 1.7e-39 167.2 175 52.6
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 1.7e-39 167.2 175 52.6
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 1.7e-39 167.2 175 52.6
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 2.2e-39 166.8 198 51.0
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 2.2e-39 166.8 156 55.1
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 2.8e-39 166.4 164 54.9
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 6.3e-39 165.2 164 54.9
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 8.3e-39 164.9 155 56.8
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 1.2e-37 161.0 164 53.7
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 3.5e-37 159.5 164 49.4
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 3.5e-37 159.5 156 51.9
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 5.9e-37 158.7 164 50.6
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.0e-36 157.9 164 48.8
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.7e-36 157.1 138 61.6
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.6e-34 150.6 201 43.8
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 3.6e-34 149.4 146 51.4
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 3.0e-33 146.4 137 56.9
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 8.9e-33 144.8 150 53.3
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 3.2e-30 136.3 204 43.1
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.2e-29 134.4 155 46.5
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 1.2e-29 134.4 85 80.0
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 5.2e-25 119.0 94 60.6
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 1.2e-24 117.9 85 62.4
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 2.2e-23 113.6 84 59.5
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 2.9e-23 113.2 110 55.5
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 4.9e-23 112.5 88 61.4
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 1.4e-22 110.9 112 55.4
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.9e-22 110.5 108 56.5
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 1.5e-16 90.9 84 60.7
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 2.3e-12 77.0 156 32.1
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 3.9e-12 76.3 44 84.1
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 6.6e-12 75.5 66 62.1
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 2.1e-10 70.5 57 56.1
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 2.1e-10 70.5 57 56.1
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 4.7e-10 69.3 57 56.1
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.8e-09 67.4 47 63.8
Medtr2g039760 Medicago truncatula HOM05D042578 ORTHO05D259668 4.0e-09 66.2 72 55.6
Medtr2g039860 Medicago truncatula HOM05D042578 ORTHO05D260859 1.3e-07 61.2 64 51.6
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 1.4e-06 57.8 52 55.8
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 2.4e-06 57.0 32 75.0
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 2.4e-06 57.0 32 75.0
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 4.1e-06 56.2 32 71.9


User provided reference genes

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