Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g038400 Medicago truncatula HOM05D003290 ORTHO05D003866 5.7e-53 210.7 110 100.0
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 7.5e-29 130.6 99 72.7
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 9.9e-29 130.2 99 72.7
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 2.9e-28 128.6 99 72.7
FvH4_4g35890 Fragaria vesca HOM05D003290 ORTHO05D003866 3.7e-28 128.3 100 69.0
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 6.4e-28 127.5 99 70.7
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 8.3e-28 127.1 99 69.7
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 1.1e-27 126.7 99 69.7
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.4e-27 125.6 99 68.7
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.4e-27 125.6 99 68.7
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 3.2e-27 125.2 99 70.7
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 3.2e-27 125.2 99 70.7
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 3.2e-27 125.2 99 70.7
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 3.2e-27 125.2 99 68.7
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 5.4e-27 124.4 99 69.7
Ciclev10018329m.g Citrus clementina HOM05D003290 ORTHO05D003866 5.4e-27 124.4 99 68.7
Cc11_g05270 Coffea canephora HOM05D003290 ORTHO05D003866 5.4e-27 124.4 74 85.1
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 7.1e-27 124.0 99 68.7
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 7.1e-27 124.0 99 67.7
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 7.1e-27 124.0 99 67.7
Sc03g0005950 Simmondsia chinensis HOM05D003290 ORTHO05D003866 7.1e-27 124.0 99 68.7
vmacro10755 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 7.1e-27 124.0 104 67.3
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 9.2e-27 123.6 99 69.7
TAR629G1764 Trochodendron aralioides HOM05D003290 ORTHO05D003866 9.2e-27 123.6 99 69.7
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.6e-26 122.9 99 67.7
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 1.6e-26 122.9 99 69.7
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.6e-26 122.9 99 66.7
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 1.6e-26 122.9 96 69.8
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 2.1e-26 122.5 99 69.7
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 2.1e-26 122.5 99 67.7
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 2.1e-26 122.5 99 69.7
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 2.7e-26 122.1 102 63.7
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 2.7e-26 122.1 77 77.9
Cpa.g.sc2.63 Carica papaya HOM05D003290 ORTHO05D003866 2.7e-26 122.1 99 68.7
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 2.7e-26 122.1 99 68.7
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 3.5e-26 121.7 99 65.7
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 3.5e-26 121.7 99 66.7
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 3.5e-26 121.7 77 80.5
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 3.5e-26 121.7 74 83.8
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 3.5e-26 121.7 99 67.7
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 3.5e-26 121.7 96 67.7
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 4.6e-26 121.3 99 68.7
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 4.6e-26 121.3 74 79.7
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 4.6e-26 121.3 96 67.7
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 4.6e-26 121.3 77 77.9
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 4.6e-26 121.3 96 67.7
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 4.6e-26 121.3 96 67.7
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 4.6e-26 121.3 99 67.7
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 6.0e-26 120.9 99 66.7
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 6.0e-26 120.9 99 66.7
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 6.0e-26 120.9 99 66.7
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 6.0e-26 120.9 99 66.7
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 6.0e-26 120.9 99 67.7
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 6.0e-26 120.9 99 66.7
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 7.8e-26 120.6 77 76.6
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 7.8e-26 120.6 77 76.6
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 7.8e-26 120.6 77 76.6
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 7.8e-26 120.6 77 76.6
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 7.8e-26 120.6 77 76.6
CARHR015160 Cardamine hirsuta HOM05D003290 ORTHO05D003866 7.8e-26 120.6 77 76.6
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 7.8e-26 120.6 99 67.7
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 7.8e-26 120.6 74 82.4
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 7.8e-26 120.6 96 67.7
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 1.0e-25 120.2 99 66.7
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 1.0e-25 120.2 99 66.7
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 1.0e-25 120.2 99 66.7
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 1.0e-25 120.2 99 66.7
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.3e-25 119.8 99 65.7
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 1.3e-25 119.8 99 67.7
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 1.3e-25 119.8 96 67.7
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 1.3e-25 119.8 99 67.7
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 1.3e-25 119.8 99 65.7
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 1.7e-25 119.4 96 68.8
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 1.7e-25 119.4 77 76.6
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 1.7e-25 119.4 99 66.7
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 1.7e-25 119.4 99 66.7
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 2.3e-25 119.0 102 63.7
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 2.3e-25 119.0 102 63.7
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.3e-25 119.0 96 66.7
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 2.3e-25 119.0 99 66.7
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 3.0e-25 118.6 99 67.7
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 3.0e-25 118.6 99 66.7
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 3.0e-25 118.6 96 69.8
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 3.0e-25 118.6 74 81.1
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 3.0e-25 118.6 74 79.7
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 3.0e-25 118.6 102 64.7
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 3.9e-25 118.2 99 66.7
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 3.9e-25 118.2 96 68.8
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 3.9e-25 118.2 96 67.7
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 3.9e-25 118.2 96 67.7
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 3.9e-25 118.2 96 67.7
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 5.1e-25 117.9 99 66.7
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 5.1e-25 117.9 74 79.7
Nitab4.5_0001529g0050 Nicotiana tabacum HOM05D003290 ORTHO05D003866 5.1e-25 117.9 74 79.7
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 5.1e-25 117.9 74 79.7
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 5.1e-25 117.9 75 74.7
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 5.1e-25 117.9 96 66.7
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 6.6e-25 117.5 102 66.7
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 8.6e-25 117.1 96 66.7
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 8.6e-25 117.1 96 66.7
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 8.6e-25 117.1 96 66.7
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 8.6e-25 117.1 96 66.7
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 8.6e-25 117.1 96 66.7
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 1.1e-24 116.7 96 66.7
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.1e-24 116.7 99 67.7
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.1e-24 116.7 99 64.6
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.5e-24 116.3 99 66.7
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 1.9e-24 115.9 96 66.7
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 1.9e-24 115.9 99 65.7
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 2.5e-24 115.5 99 66.7
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 3.3e-24 115.2 99 65.7
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 3.3e-24 115.2 74 74.3
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 4.3e-24 114.8 96 66.7
CiPaw.05G160000 Carya illinoinensis HOM05D003290 ORTHO05D003866 1.2e-23 113.2 99 63.6
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 2.1e-23 112.5 74 74.3
Peaxi162Scf00130g01212 Petunia axillaris HOM05D003290 ORTHO05D003866 2.8e-23 112.1 99 59.6
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 2.8e-23 112.1 99 61.6
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 3.6e-23 111.7 99 63.6
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 3.6e-23 111.7 74 77.0
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 6.2e-23 110.9 99 64.6
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 6.2e-23 110.9 121 54.5
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 1.1e-22 110.2 76 75.0
Solyc04g018090.2 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.1e-22 110.2 74 73.0
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 1.1e-22 110.2 96 60.4
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 1.4e-22 109.8 96 60.4
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 6.8e-22 107.5 74 73.0
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 8.9e-22 107.1 99 60.6
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 1.2e-21 106.7 96 60.4
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.2e-21 106.7 99 60.6
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 2.6e-21 105.5 96 60.4
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 2.6e-21 105.5 96 60.4
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 5.8e-21 104.4 96 59.4
MCO04G150 Micromonas commoda HOM05D003290 ORTHO05D003866 9.9e-21 103.6 74 67.6
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 2.2e-20 102.4 99 57.6
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 6.4e-20 100.9 99 57.6
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 8.4e-20 100.5 58 82.8
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 1.4e-19 99.8 53 92.5
SHI04225 Sapria himalayana HOM05D003290 ORTHO05D003866 2.4e-19 99.0 54 87.0
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 1.2e-18 96.7 58 77.6
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 1.6e-18 96.3 55 83.6
DCAR_030316 Daucus carota HOM05D003290 ORTHO05D003866 2.7e-18 95.5 87 58.6
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 3.5e-18 95.1 89 58.4
Haze_10797 Corylus avellana HOM05D003290 ORTHO05D003866 3.3e-16 88.6 58 74.1
PRCOL_00005089 Prasinoderma coloniale HOM05D003290 ORTHO05D003866 9.9e-13 77.0 77 51.9


User provided reference genes

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