Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 8.7e-119 431.0 354 100.0
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 1.4e-84 317.4 358 84.9
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 3.2e-81 306.2 359 83.8
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 5.3e-68 262.3 357 77.6
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.9e-65 253.8 355 71.5
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 8.0e-64 248.4 357 73.7
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 1.3e-61 241.1 361 72.3
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 8.3e-61 238.4 342 76.9
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.8e-60 237.3 320 76.6
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 4.5e-59 232.6 346 75.1
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 6.1e-56 222.2 330 72.1
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 2.3e-55 220.3 334 75.4
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 8.9e-55 218.4 319 70.2
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 3.4e-54 216.5 362 66.6
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 4.4e-54 216.1 322 69.9
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 9.8e-54 214.9 320 60.9
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 9.8e-54 214.9 343 67.9
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 2.8e-53 213.4 337 68.8
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.8e-52 210.7 320 60.3
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 3.1e-52 209.9 359 66.0
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 5.4e-52 209.1 349 66.5
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 2.0e-51 207.2 318 69.5
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 2.7e-51 206.8 296 75.7
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 2.7e-51 206.8 296 76.0
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 2.7e-51 206.8 322 75.2
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 2.7e-51 206.8 348 66.7
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 5.9e-51 205.7 347 65.7
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 7.8e-51 205.3 335 71.6
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.3e-50 204.5 318 73.0
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 1.3e-50 204.5 323 67.5
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 3.8e-50 203.0 356 62.1
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.1e-49 201.4 317 73.2
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 3.3e-49 199.9 318 63.5
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 9.5e-49 198.4 317 65.3
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 9.5e-49 198.4 359 68.8
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 2.1e-48 197.2 320 61.9
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 2.1e-48 197.2 331 69.2
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.7e-48 196.1 320 61.2
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 4.7e-48 196.1 320 60.6
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 8.0e-48 195.3 328 71.0
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 8.0e-48 195.3 335 72.8
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 1.4e-47 194.5 350 64.3
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 1.8e-47 194.1 351 67.5
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.3e-47 193.7 351 57.5
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 4.0e-47 193.0 335 61.8
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 5.2e-47 192.6 320 64.4
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 6.8e-47 192.2 316 74.1
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.5e-46 191.0 322 69.3
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.5e-46 191.0 351 63.0
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 1.5e-46 191.0 320 60.9
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.6e-46 190.3 373 63.0
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.6e-46 190.3 350 62.9
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.4e-46 189.9 304 69.1
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 4.4e-46 189.5 342 67.8
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 4.4e-46 189.5 307 74.3
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 7.5e-46 188.7 364 63.2
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 9.8e-46 188.3 324 63.6
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 9.8e-46 188.3 322 68.0
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 1.3e-45 188.0 321 69.5
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 1.7e-45 187.6 334 71.6
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 1.7e-45 187.6 336 69.3
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.9e-45 186.8 312 64.7
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 3.7e-45 186.4 336 51.2
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 6.4e-45 185.7 341 60.1
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.9e-44 184.1 305 72.8
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 1.9e-44 184.1 313 73.5
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 3.2e-44 183.3 299 69.6
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 4.1e-44 183.0 322 67.1
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 4.1e-44 183.0 322 67.1
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 4.1e-44 183.0 322 67.1
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 4.1e-44 183.0 322 67.1
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 4.1e-44 183.0 318 63.5
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 4.1e-44 183.0 326 58.3
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 7.0e-44 182.2 322 67.1
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 1.2e-43 181.4 322 67.7
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 1.6e-43 181.0 349 57.3
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.0e-43 180.6 313 73.5
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 6.0e-43 179.1 334 64.4
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.0e-42 178.3 376 59.8
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 1.0e-42 178.3 356 46.9
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 2.3e-42 177.2 321 68.2
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.0e-42 176.8 321 70.1
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 5.0e-42 176.0 334 55.4
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 8.6e-42 175.3 328 64.3
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 8.6e-42 175.3 321 61.7
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 8.6e-42 175.3 321 61.7
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 8.6e-42 175.3 342 57.6
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.5e-41 174.5 320 66.9
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 1.2e-40 171.4 324 63.3
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.2e-40 171.4 318 68.6
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 2.1e-40 170.6 306 59.5
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 4.7e-40 169.5 332 58.4
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 1.5e-38 164.5 342 55.3
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.0e-38 164.1 354 62.4
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 2.6e-38 163.7 359 59.6
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 3.4e-38 163.3 359 59.6
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.7e-37 161.0 301 68.1
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.7e-37 159.8 263 81.7
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 4.9e-37 159.5 337 47.8
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.4e-36 157.9 285 68.1
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 1.9e-36 157.5 313 69.0
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 3.2e-36 156.8 320 66.2
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 7.0e-36 155.6 335 66.9
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 9.2e-36 155.2 324 67.3
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 1.6e-35 154.5 362 55.0
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 2.1e-35 154.1 352 63.6
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 2.7e-35 153.7 335 66.9
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.7e-35 153.7 347 59.4
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 1.7e-34 151.0 323 56.3
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 1.7e-34 151.0 323 56.3
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.3e-34 150.6 377 60.7
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 5.1e-34 149.4 365 58.1
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 6.6e-34 149.1 337 56.4
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 1.9e-33 147.5 323 64.4
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 2.5e-33 147.1 324 61.4
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.5e-33 147.1 359 60.4
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 4.3e-33 146.4 349 62.2
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.2e-32 144.8 352 57.1
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.8e-32 143.7 365 56.2
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 3.6e-32 143.3 327 52.0
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.6e-32 143.3 316 67.7
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 4.7e-32 142.9 371 56.6
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 2.3e-31 140.6 323 65.9
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 2.3e-31 140.6 323 65.9
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 4.0e-31 139.8 337 58.8
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 5.2e-31 139.4 302 68.9
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 5.2e-31 139.4 323 66.3
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 6.8e-31 139.0 362 60.2
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 8.9e-31 138.7 252 73.8
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.2e-30 138.3 315 67.0
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 4.4e-30 136.3 342 55.6
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 7.5e-30 135.6 390 39.5
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 9.9e-30 135.2 361 52.9
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.2e-29 134.0 312 66.3
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 2.2e-29 134.0 338 66.0
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.9e-28 131.0 279 62.4
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.9e-28 131.0 315 56.2
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 7.1e-28 129.0 347 47.8
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 6.0e-27 125.9 320 60.9
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.0e-26 125.2 361 60.7
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 1.7e-26 124.4 312 58.7
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 5.1e-26 122.9 320 58.4
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 5.6e-25 119.4 313 63.6
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 7.3e-25 119.0 315 58.1
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 1.6e-24 117.9 357 51.3
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 1.6e-24 117.9 358 50.3
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 3.6e-24 116.7 345 58.3
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 3.6e-24 116.7 339 61.1
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 8.1e-24 115.5 340 57.6
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 8.1e-24 115.5 318 53.8
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.1e-23 115.2 310 63.9
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 1.2e-22 111.7 313 58.8
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.5e-22 111.3 155 50.3
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 1.5e-22 111.3 312 58.7
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 2.0e-22 110.9 307 36.2
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 4.4e-22 109.8 318 59.7
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 5.8e-22 109.4 314 57.3
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.7e-21 107.8 158 59.5
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 1.1e-20 105.1 359 53.2
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 2.4e-20 104.0 359 52.9
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 2.4e-20 104.0 321 39.6
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.1e-19 100.9 162 52.5
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.7e-19 100.5 334 45.2
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 3.5e-19 100.1 268 49.3
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 4.6e-19 99.8 97 51.5
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 4.6e-19 99.8 97 51.5
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 7.8e-19 99.0 322 56.5
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.7e-18 97.8 364 52.7
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 5.1e-18 96.3 97 50.5
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 1.1e-17 95.1 94 48.9
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 5.6e-17 92.8 89 59.6
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.1e-16 90.9 153 60.1
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 1.8e-15 87.8 156 55.1
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 2.4e-15 87.4 357 50.1
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 2.4e-15 87.4 357 50.1
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 2.4e-15 87.4 357 50.1
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 4.0e-15 86.7 362 37.3
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 9.9e-14 82.0 167 52.1
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 4.9e-13 79.7 259 62.9
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 7.1e-12 75.9 267 56.2
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 2.1e-11 74.3 146 62.3
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 1.4e-07 61.6 116 53.4
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 4.0e-07 60.1 78 46.2
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 4.5e-06 56.6 100 38.0


User provided reference genes

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