Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 8.6e-129 463.8 252 100.0
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 1.7e-116 422.9 248 91.1
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 3.8e-116 421.8 250 91.2
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 6.0e-98 361.3 252 75.8
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 3.7e-95 352.1 250 74.8
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 8.4e-92 340.9 251 70.9
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 1.2e-90 337.0 252 72.2
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 2.1e-90 336.3 252 72.6
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 1.4e-83 313.5 252 65.9
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 2.7e-82 309.3 252 65.5
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 6.9e-70 268.1 243 59.7
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 6.9e-70 268.1 243 59.7
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 9.1e-70 267.7 250 58.0
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 1.2e-69 267.3 249 57.8
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 5.9e-69 265.0 250 56.8
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 1.3e-68 263.8 250 57.2
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 1.7e-68 263.5 250 56.8
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 2.5e-67 259.6 250 57.6
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 5.5e-67 258.5 249 57.4
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 7.2e-67 258.1 243 58.4
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 7.2e-67 258.1 250 56.0
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 4.7e-66 255.4 250 57.2
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 6.1e-66 255.0 248 55.6
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 1.4e-65 253.8 249 55.8
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 3.0e-65 252.7 252 56.0
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 3.9e-65 252.3 251 58.2
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 3.7e-63 245.7 252 54.8
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 8.2e-63 244.6 257 54.1
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 1.1e-62 244.2 250 54.0
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 1.8e-62 243.4 252 54.0
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 1.8e-62 243.4 250 54.4
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 2.0e-61 240.0 247 55.1
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 5.9e-61 238.4 250 53.2
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 1.7e-60 236.9 245 54.3
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 2.2e-60 236.5 255 53.3
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 3.8e-60 235.7 249 54.6
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 8.5e-60 234.6 245 54.3
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 2.1e-58 229.9 250 52.0
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 2.7e-58 229.6 230 53.0
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 8.0e-58 228.0 274 49.6
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 1.0e-57 227.6 245 52.7
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 1.4e-57 227.3 245 53.1
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 3.0e-57 226.1 253 53.4
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 3.0e-57 226.1 245 52.7
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 8.8e-57 224.6 244 52.0
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 2.6e-56 223.0 245 51.8
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 3.3e-56 222.6 245 53.1
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 4.4e-56 222.2 245 51.4
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 4.8e-55 218.8 243 49.4
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 1.1e-54 217.6 237 51.1
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 3.1e-54 216.1 245 50.6
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 3.1e-54 216.1 294 44.9
CANSAT56G2223 Cannabis sativa HOM05D007474 ORTHO05D009367 2.0e-53 213.4 248 48.4
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 2.0e-53 213.4 245 51.0
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 5.9e-53 211.8 240 48.8
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 1.0e-52 211.1 263 47.9
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 1.3e-52 210.7 248 50.8
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 3.8e-52 209.1 214 54.2
Sabra18G0115300 Salix brachista HOM05D007474 ORTHO05D009367 5.5e-51 205.3 194 56.7
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 7.2e-51 204.9 249 46.6
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 1.6e-50 203.8 253 49.4
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 2.1e-50 203.4 248 49.6
QL04p010614 Quercus lobata HOM05D007474 ORTHO05D009367 8.0e-50 201.4 250 50.0
Ca_02115_v3 Cicer arietinum L. HOM05D007474 ORTHO05D009367 3.0e-49 199.5 126 85.7
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 4.0e-49 199.1 239 46.4
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 4.1e-46 189.1 257 44.0
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 9.1e-46 188.0 251 46.2
BcaC06g32774 Brassica carinata HOM05D007474 ORTHO05D009367 2.0e-45 186.8 245 46.5
COL.COLO4_06926 Corchorus olitorius HOM05D007474 ORTHO05D009367 1.5e-43 180.6 200 50.5
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.5e-43 180.6 231 46.3
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 7.2e-43 178.3 246 41.5
EL10Ac2g04755 Beta vulgaris HOM05D007474 ORTHO05D009367 3.6e-42 176.0 249 44.2
MBI16_g28190_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 1.8e-41 173.7 202 48.5
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 6.8e-41 171.8 243 44.0
PGR142G0563 Punica granatum HOM05D007474 ORTHO05D009367 8.8e-41 171.4 263 42.2
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 5.7e-40 168.7 200 48.0
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 2.2e-39 166.8 243 43.6
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 2.2e-39 166.8 243 41.6
BraA03t14710Z Brassica rapa HOM05D007474 ORTHO05D009367 3.7e-39 166.0 267 40.8
Nitab4.5_0000056g0090 Nicotiana tabacum HOM05D007474 ORTHO05D009367 5.9e-37 158.7 276 38.4
Ah.09g225720 Amaranthus hybridus HOM05D007474 ORTHO05D009367 1.3e-36 157.5 243 42.4
Potri.018G141166 Populus trichocarpa HOM05D007474 ORTHO05D009367 1.5e-35 154.1 144 60.4
CSS0031812 Camellia sinensis var. sinensis HOM05D007474 ORTHO05D009367 9.5e-35 151.4 164 52.4
AUR62039384 Chenopodium quinoa HOM05D007474 ORTHO05D009367 9.5e-35 151.4 235 41.3
Eucgr.C00103 Eucalyptus grandis HOM05D007474 ORTHO05D009367 4.0e-33 146.0 145 52.4
vmacro20808 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 6.8e-33 145.2 146 54.8
Hma1.2p1_0140F.1_g063730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 3.5e-29 132.9 121 57.0
PGR142G3816 Punica granatum HOM05D007474 ORTHO05D009367 4.7e-26 122.5 120 54.2
Potri.018G141232 Populus trichocarpa HOM05D007474 ORTHO05D009367 8.9e-25 118.2 126 48.4
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 1.5e-19 100.9 243 30.0
Hund13756 Selenicereus undatus HOM05D007474 ORTHO05D009367 3.6e-18 96.3 126 45.2
AUR62004543 Chenopodium quinoa HOM05D007474 ORTHO05D009367 1.8e-17 94.0 168 38.7
Actinidia07550 Actinidia chinensis HOM05D007474 ORTHO05D009367 5.2e-17 92.4 78 59.0
arahy.Tifrunner.gnm1.ann1.245C1J Arachis hypogaea HOM05D007474 ORTHO05D009367 2.6e-16 90.1 65 64.6
Lj4A313T24 Lonicera japonica HOM05D007474 ORTHO05D009367 2.6e-16 90.1 85 57.6
arahy.Tifrunner.gnm1.ann1.TVY351 Arachis hypogaea HOM05D007474 ORTHO05D009367 2.4e-14 83.6 61 63.9
Lju170C0T1 Lonicera japonica HOM05D007424 ORTHO05D009367 3.3e-11 73.2 67 56.7
TWI63G1298 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 9.5e-11 71.6 105 39.0
vmacro20809 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 2.1e-10 70.5 55 65.5
arahy.Tifrunner.gnm1.ann1.J5XFRX Arachis hypogaea HOM05D011742 ORTHO05D014450 6.8e-09 65.5 55 60.0
Mapoly0011s0196 Marchantia polymorpha HOM05D007474 ORTHO05D009367 8.9e-09 65.1 258 22.5
QL04p011351 Quercus lobata HOM05D000009 ORTHO05D000008 1.2e-08 64.7 97 42.3
Actinidia07549 Actinidia chinensis HOM05D007474 ORTHO05D009367 6.4e-07 58.9 47 66.0


User provided reference genes

Program Settings