Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 9.5e-237 823.2 429 100.0
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 3.4e-210 734.9 429 91.6
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 5.6e-205 717.6 430 87.0
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 9.4e-152 540.8 419 68.0
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.2e-138 497.3 427 63.2
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.3e-136 489.2 387 65.4
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.3e-121 440.7 434 55.8
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 2.5e-120 436.4 413 58.1
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 5.2e-118 428.7 386 58.5
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 9.2e-107 391.3 392 53.8
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 5.6e-104 382.1 396 52.3
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 2.8e-103 379.8 397 52.4
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 3.4e-101 372.9 395 50.4
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.9e-100 369.8 418 47.8
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 6.4e-100 368.6 395 49.1
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 6.4e-100 368.6 390 51.5
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 2.4e-99 366.7 392 51.5
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.6e-98 364.0 403 49.1
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.1e-98 363.6 398 48.0
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.7e-98 363.2 401 48.6
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 1.0e-97 361.3 429 48.7
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 2.3e-97 360.1 398 48.5
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 8.1e-95 351.7 443 45.8
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 9.0e-94 348.2 400 46.5
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.2e-93 347.8 400 48.8
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 3.4e-93 346.3 394 49.0
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 8.4e-92 341.7 392 45.4
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 4.2e-91 339.3 409 46.9
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 5.4e-91 339.0 400 47.2
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 2.1e-90 337.0 405 45.4
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 2.1e-90 337.0 394 45.4
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 2.7e-90 336.7 426 45.1
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 7.9e-90 335.1 456 44.1
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.0e-89 334.7 393 46.3
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 3.0e-89 333.2 390 44.9
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 3.0e-89 333.2 400 47.2
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 5.1e-89 332.4 390 44.9
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 6.7e-89 332.0 402 47.3
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 6.7e-89 332.0 393 45.5
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 8.7e-89 331.6 423 45.2
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 8.7e-89 331.6 397 45.6
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.1e-88 331.3 389 46.5
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.9e-88 330.5 421 43.5
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.5e-88 330.1 391 46.3
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 7.4e-88 328.6 360 48.3
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 1.3e-87 327.8 423 43.5
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.1e-87 327.0 439 41.2
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.8e-87 326.6 282 63.5
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 8.1e-87 325.1 396 46.2
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.1e-86 324.7 408 44.9
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 3.1e-86 323.2 391 45.0
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 2.6e-85 320.1 217 72.4
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 3.4e-85 319.7 398 45.5
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 1.0e-84 318.2 391 44.0
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-84 317.8 412 44.4
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.7e-84 317.4 435 45.3
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 2.9e-84 316.6 399 44.6
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 3.8e-84 316.2 419 43.4
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 4.9e-84 315.8 415 43.6
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-83 314.7 410 43.9
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 2.5e-83 313.5 410 44.1
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 3.2e-83 313.2 393 43.0
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 5.5e-83 312.4 386 46.1
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.5e-83 312.4 410 43.4
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 7.1e-83 312.0 442 43.2
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.2e-82 311.2 431 42.9
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.1e-82 310.5 391 45.3
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 2.1e-82 310.5 395 46.1
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 3.5e-82 309.7 431 42.9
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 4.6e-82 309.3 418 44.7
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.3e-81 307.8 429 43.1
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.3e-81 307.8 386 44.0
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 3.9e-81 306.2 391 44.2
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 5.1e-81 305.8 401 43.9
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 5.1e-81 305.8 391 43.7
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 6.7e-81 305.4 391 44.2
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 5.7e-80 302.4 391 43.7
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 5.7e-80 302.4 391 43.7
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 5.7e-80 302.4 391 43.7
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 5.7e-80 302.4 341 49.0
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.6e-79 300.8 423 43.7
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.4e-78 297.0 398 43.0
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.4e-78 297.0 493 40.8
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 4.0e-78 296.2 413 44.3
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.0e-78 296.2 446 40.6
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 4.0e-78 296.2 428 41.1
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 5.3e-78 295.8 428 39.3
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 6.9e-78 295.4 421 41.6
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.5e-77 294.3 426 40.6
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.0e-77 293.9 389 40.9
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 3.4e-77 293.1 395 43.3
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 7.6e-77 292.0 405 43.5
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 1.7e-76 290.8 438 40.9
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 3.8e-76 289.7 421 40.6
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 5.0e-76 289.3 414 40.1
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 2.5e-75 287.0 395 43.0
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 4.2e-75 286.2 391 41.2
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 5.5e-75 285.8 422 41.2
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 1.2e-74 284.6 398 39.9
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.5e-74 283.1 398 40.7
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 3.5e-74 283.1 404 41.8
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 3.5e-74 283.1 400 42.2
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.3e-73 281.2 417 40.0
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 8.7e-73 278.5 312 47.1
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.4e-70 271.2 606 30.7
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.0e-68 265.0 425 36.9
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 7.2e-67 258.8 395 40.8
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 9.4e-67 258.5 221 57.9
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 9.4e-67 258.5 316 43.7
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 3.6e-66 256.5 401 40.4
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 7.4e-64 248.8 448 35.3
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 5.9e-61 239.2 401 36.9
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 1.0e-60 238.4 394 37.1
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.0e-60 236.1 385 39.7
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 5.5e-59 232.6 433 35.8
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 7.2e-59 232.3 386 39.1
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.7e-55 219.9 389 35.5
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 9.1e-54 215.3 296 41.9
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 5.7e-48 196.1 345 37.4
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 2.2e-44 184.1 437 32.3
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 2.5e-43 180.6 393 34.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 7.2e-43 179.1 438 32.6
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.6e-42 177.9 237 41.8
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.0e-41 175.3 307 34.5
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 6.8e-41 172.6 179 56.4
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.5e-37 159.8 239 39.7
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.9e-37 159.5 312 35.9
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 5.0e-36 156.4 418 32.5
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.4e-35 152.1 369 31.2
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 4.7e-34 149.8 235 36.6
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.2e-33 146.4 208 38.5
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 3.7e-31 140.2 112 68.8
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 3.7e-31 140.2 112 68.8
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.7e-28 131.3 322 32.6
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 2.9e-28 130.6 336 31.5
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 4.0e-25 120.2 128 47.7
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.2e-23 114.4 106 50.9
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.3e-23 112.5 229 33.6
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 4.1e-22 110.2 159 42.1
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 4.6e-21 106.7 161 38.5
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 6.6e-20 102.8 110 47.3
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 1.9e-19 101.3 106 48.1
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 3.3e-19 100.5 196 39.3
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.3e-19 100.1 407 29.5
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.2e-18 98.6 388 26.5
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 6.2e-18 96.3 132 40.2
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.0e-17 95.5 160 36.2
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.4e-16 90.1 408 28.2
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.9e-15 86.7 113 40.7
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 1.1e-14 85.5 448 24.8
Ca_02098_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 7.8e-13 79.3 105 48.6
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 8.6e-12 75.9 124 41.1
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.1e-09 68.9 88 42.0
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 2.3e-09 67.8 104 36.5
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 3.7e-07 60.5 90 35.6
Cre01.g070567 Chlamydomonas reinhardtii HOM05D004436 ORTHO05D005179 7.1e-06 56.2 185 27.6


User provided reference genes

Program Settings