Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 0.0e+00 1435.6 1071 100.0
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 5.6e-302 1041.2 1075 82.0
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 7.1e-281 971.1 1069 72.5
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.4e-260 903.7 1073 76.4
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.2e-232 810.8 1070 72.7
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 6.7e-231 805.1 1068 72.0
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 3.1e-228 796.2 1070 70.8
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 4.1e-212 742.7 1061 70.9
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.6e-208 730.7 1061 64.7
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 3.6e-208 729.6 1060 64.8
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 3.1e-204 716.5 686 82.8
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 6.6e-170 602.4 1027 64.8
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 9.5e-169 598.6 1066 62.1
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 3.4e-166 590.1 1027 64.0
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 7.5e-166 589.0 1061 61.2
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 1.3e-165 588.2 978 62.9
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.9e-165 587.0 1073 61.8
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 3.7e-165 586.6 1073 61.8
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 2.0e-158 564.3 1071 59.3
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 3.2e-156 557.0 1069 59.7
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.7e-155 553.9 741 60.1
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 1.0e-154 552.0 1082 61.7
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 2.4e-151 540.8 1061 59.9
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 1.2e-150 538.5 1077 61.3
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 2.6e-150 537.3 1088 58.9
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.4e-148 531.6 1079 59.1
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 3.2e-148 530.4 1079 59.4
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 5.3e-143 513.1 1064 59.8
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 6.9e-143 512.7 1000 60.9
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.0e-142 511.1 1080 59.0
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 8.4e-141 505.8 1047 60.4
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.1e-140 505.4 1057 53.5
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 7.1e-140 502.7 972 64.0
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 3.3e-137 493.8 1074 48.2
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 4.3e-137 493.4 980 63.4
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 9.6e-137 492.3 1061 58.6
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 2.4e-135 487.6 915 64.4
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 5.1e-130 469.9 1063 56.3
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 8.7e-130 469.2 1062 57.4
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 2.8e-128 464.2 1062 54.4
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 1.8e-127 461.5 1061 55.9
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 3.7e-120 437.2 1073 56.3
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 3.4e-118 430.6 1062 55.6
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 5.5e-116 423.3 1063 54.9
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 9.7e-113 412.5 1068 54.6
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 8.2e-112 409.5 1062 55.3
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 2.9e-109 401.0 1075 54.5
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 5.0e-109 400.2 632 57.4
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 5.5e-108 396.7 725 53.2
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 1.6e-107 395.2 1063 46.4
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 3.0e-106 391.0 759 50.2
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 1.5e-105 388.7 751 51.7
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.2e-104 384.8 759 50.5
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 2.4e-103 381.3 739 51.6
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 4.1e-103 380.6 1065 53.6
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 9.1e-103 379.4 763 50.6
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 2.6e-102 377.9 751 50.3
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 2.6e-102 377.9 759 49.8
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 2.2e-101 374.8 750 49.7
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 3.2e-100 370.9 1077 53.1
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 7.2e-100 369.8 585 56.4
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 6.7e-98 363.2 1063 51.6
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 2.6e-97 361.3 913 56.0
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 3.7e-96 357.5 682 58.5
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 4.1e-95 354.0 1055 53.5
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.2e-94 352.4 1058 52.0
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 1.7e-93 348.6 1061 54.3
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 1.5e-92 345.5 666 45.8
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 3.2e-92 344.4 926 56.2
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 7.5e-89 333.2 1056 52.2
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 9.1e-87 326.2 1090 52.4
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 2.7e-86 324.7 737 47.2
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 3.2e-84 317.8 745 46.0
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 3.2e-84 317.8 745 46.0
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 7.2e-84 316.6 749 45.8
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 1.6e-83 315.5 976 54.5
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 1.5e-76 292.4 972 53.1
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 1.9e-76 292.0 757 47.3
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 1.2e-73 282.7 754 46.4
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 1.7e-72 278.9 1007 38.1
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 6.3e-72 276.9 757 46.8
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 3.5e-70 271.2 361 42.1
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 1.2e-67 262.7 679 50.5
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 2.1e-67 261.9 746 40.8
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 6.1e-67 260.4 926 54.1
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 2.8e-59 235.0 605 50.4
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.2e-54 219.5 344 35.5
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 2.1e-54 218.8 383 54.0
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 2.3e-45 188.7 735 42.9
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 1.2e-43 183.0 166 60.8
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 2.1e-43 182.2 566 48.4
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 6.6e-37 160.6 176 44.9
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 1.5e-33 149.4 103 69.9
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 2.6e-33 148.7 492 58.3
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 2.4e-31 142.1 230 39.1
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 1.3e-29 136.3 239 33.5
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 3.1e-26 125.2 449 59.7
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 4.0e-26 124.8 453 57.8
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.7e-24 119.4 211 34.1
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 4.9e-24 117.9 453 58.1
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 1.9e-23 115.9 650 40.6
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 2.4e-23 115.5 1078 46.3
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.8e-21 109.4 414 61.4
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 8.1e-19 100.5 412 60.7
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 2.5e-15 89.0 148 37.2
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 8.7e-13 80.5 100 43.0
Nitab4.5_0002941g0070 Nicotiana tabacum HOM05D008483 ORTHO05D010726 2.6e-09 68.9 97 34.0
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 3.4e-09 68.6 150 30.0
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 3.4e-09 68.6 150 30.0
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 1.3e-08 66.6 180 23.3
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 2.2e-08 65.9 239 25.1
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 6.5e-08 64.3 280 22.5
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.1e-07 63.5 106 33.0
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 1.9e-07 62.8 237 23.6
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 2.5e-07 62.4 352 21.6
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 2.5e-07 62.4 103 31.1
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 2.5e-07 62.4 103 31.1
Nitab4.5_0000030g0110 Nicotiana tabacum HOM05D008483 ORTHO05D010726 2.5e-07 62.4 95 31.6
EL10Ac4g09538 Beta vulgaris HOM05D000001 ORTHO05D000003 4.2e-07 61.6 209 21.5
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 4.2e-07 61.6 107 35.5
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 5.5e-07 61.2 100 34.0
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.5e-07 61.2 154 29.2
Sabra07G0114700 Salix brachista HOM05D000001 ORTHO05D000003 5.5e-07 61.2 202 19.8
PSO017G1665 Papaver somniferum HOM05D015807 ORTHO05D011376 9.3e-07 60.5 255 22.0
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 1.2e-06 60.1 123 30.1
AagrBONN_evm.TU.Sc2ySwM_362.2053 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-06 59.3 129 29.5
TPR.G25962 Trifolium pratense HOM05D002986 ORTHO05D007611 3.5e-06 58.5 102 33.3
Cpa.g.sc209.25 Carica papaya HOM05D000001 ORTHO05D009704 4.6e-06 58.2 173 28.9
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 4.6e-06 58.2 123 29.3
AagrBONN_evm.TU.Sc2ySwM_228.4458 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.1e-06 57.8 253 23.7
AagrBONN_evm.TU.Sc2ySwM_362.2765 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.1e-06 57.8 224 21.4
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 6.1e-06 57.8 86 33.7
RcHm_v2.0_Chr5g0074231 Rosa chinensis HOM05D009519 ORTHO05D010307 6.1e-06 57.8 55 43.6
AagrBONN_evm.TU.Sc2ySwM_368.2310 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.9e-06 57.4 382 23.6
PSO832G1987 Papaver somniferum HOM05D000001 ORTHO05D000003 7.9e-06 57.4 149 22.8
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 7.9e-06 57.4 107 29.0
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 7.9e-06 57.4 105 31.4


User provided reference genes

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