Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 1.3e-169 599.7 331 100.0
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 3.2e-139 498.8 329 85.4
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 6.2e-135 484.6 329 84.2
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 1.2e-125 453.8 324 72.5
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 5.8e-125 451.4 327 72.8
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 3.9e-121 438.7 327 75.5
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 7.4e-120 434.5 320 73.4
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 2.8e-119 432.6 323 74.9
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 7.1e-115 417.9 327 72.8
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.2e-114 417.2 318 67.3
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 2.1e-114 416.4 333 73.0
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 4.3e-112 408.7 333 73.3
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 7.4e-112 407.9 321 71.0
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 1.3e-111 407.1 318 64.2
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.6e-111 406.8 321 72.3
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 1.4e-110 403.7 324 69.4
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 4.0e-110 402.1 324 69.4
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 7.4e-104 381.3 325 65.8
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 4.8e-103 378.6 216 86.1
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 1.0e-100 370.9 318 67.0
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 7.2e-99 364.8 322 64.0
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 2.4e-94 349.7 329 56.2
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 1.0e-92 344.4 331 55.9
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 1.0e-92 344.4 321 59.8
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 5.0e-92 342.0 319 63.0
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 4.2e-91 339.0 315 58.4
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 3.0e-89 332.8 329 52.9
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.1e-88 330.9 326 53.4
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 2.2e-87 326.6 320 60.3
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 6.3e-87 325.1 326 50.6
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.1e-86 324.3 322 52.5
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 1.4e-86 323.9 319 58.0
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 2.4e-86 323.2 324 54.3
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 1.2e-85 320.9 325 59.4
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 7.7e-85 318.2 323 54.8
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 7.7e-85 318.2 325 52.3
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 7.7e-85 318.2 311 52.4
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 1.3e-84 317.4 312 53.5
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 2.2e-84 316.6 331 49.8
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 2.2e-84 316.6 319 54.5
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 5.0e-84 315.5 329 51.1
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 8.5e-84 314.7 330 50.0
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 8.5e-84 314.7 329 51.1
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 1.4e-83 313.9 317 53.9
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 4.2e-83 312.4 319 54.2
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 5.5e-83 312.0 313 61.7
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 2.1e-82 310.1 327 51.1
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 2.7e-82 309.7 324 50.9
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 2.7e-82 309.7 319 52.0
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 3.6e-82 309.3 324 53.1
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 4.7e-82 308.9 330 49.7
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 7.9e-82 308.1 311 52.7
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.4e-81 307.4 313 50.8
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 1.4e-81 307.4 330 48.8
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 6.7e-81 305.1 313 50.8
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 6.7e-81 305.1 337 49.0
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 6.7e-81 305.1 327 52.3
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 6.7e-81 305.1 326 47.9
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 8.8e-81 304.7 319 49.8
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 3.3e-80 302.8 319 50.2
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 4.4e-80 302.4 315 51.1
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 5.7e-80 302.0 327 49.8
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 5.7e-80 302.0 321 51.4
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 5.7e-80 302.0 327 52.3
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 1.3e-79 300.8 298 51.7
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.7e-79 300.4 373 46.9
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.7e-79 300.4 316 50.6
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 4.8e-79 298.9 324 49.1
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 1.1e-78 297.7 330 49.1
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 1.8e-78 297.0 318 49.4
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 2.4e-78 296.6 319 48.9
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 2.4e-78 296.6 331 52.0
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.4e-78 296.6 322 54.0
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 3.1e-78 296.2 330 51.5
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 3.1e-78 296.2 321 50.5
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 4.1e-78 295.8 323 49.5
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 5.3e-78 295.4 314 51.0
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 7.0e-78 295.0 318 49.1
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 2.6e-77 293.1 325 47.7
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 5.9e-77 292.0 229 60.3
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.0e-76 291.2 325 47.1
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 1.7e-76 290.4 327 46.8
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 2.2e-76 290.0 348 46.6
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.8e-76 289.3 329 57.4
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 6.5e-76 288.5 313 45.7
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 6.5e-76 288.5 330 50.9
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 1.1e-75 287.7 322 46.3
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 3.2e-75 286.2 314 51.6
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 5.5e-75 285.4 313 46.3
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 5.5e-75 285.4 313 50.2
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 5.5e-75 285.4 255 54.5
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 2.1e-74 283.5 313 44.7
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 4.7e-74 282.3 313 45.4
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.0e-73 281.2 313 46.0
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 1.0e-73 281.2 313 46.6
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 1.4e-73 280.8 313 45.4
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 2.3e-73 280.0 313 45.4
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 2.3e-73 280.0 326 48.8
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.0e-73 279.6 327 46.8
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 4.0e-73 279.3 314 44.6
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 1.1e-72 277.7 313 47.9
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 4.4e-72 275.8 244 55.3
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 5.7e-72 275.4 353 52.7
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 7.5e-72 275.0 313 44.1
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 9.7e-72 274.6 313 44.4
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.3e-71 274.2 259 55.2
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 1.3e-71 274.2 328 47.0
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 2.8e-71 273.1 324 48.5
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 2.8e-71 273.1 324 48.5
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 1.1e-70 271.2 313 46.0
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 2.4e-70 270.0 313 49.5
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 2.4e-70 270.0 313 49.5
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 1.2e-69 267.7 368 42.7
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 2.0e-69 266.9 317 45.7
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 4.5e-69 265.8 313 45.0
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 8.5e-68 261.5 314 46.2
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 3.2e-67 259.6 268 52.6
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 4.2e-67 259.2 276 50.7
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 8.0e-66 255.0 321 50.8
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 6.8e-65 251.9 228 75.4
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 6.8e-65 251.9 322 48.1
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 1.6e-58 230.7 191 57.6
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 2.7e-58 229.9 322 45.3
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 2.3e-57 226.9 321 41.1
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 3.8e-52 209.5 322 40.1
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 5.6e-51 205.7 224 50.0
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 6.4e-47 192.2 182 51.6
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 1.6e-45 187.6 331 38.4
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 5.0e-44 182.6 225 48.0
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 6.6e-44 182.2 324 37.3
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 1.1e-43 181.4 285 40.7
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 7.3e-43 178.7 307 34.2
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 4.7e-42 176.0 335 37.9
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 1.8e-41 174.1 298 39.9
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.5e-40 171.0 247 41.3
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 3.4e-40 169.9 312 31.7
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.0e-36 158.3 337 38.3
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 1.7e-36 157.5 142 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 8.6e-36 155.2 324 33.6
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 2.7e-29 133.7 267 36.7
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.6e-28 129.0 114 58.8
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 4.7e-26 122.9 115 50.4
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 8.6e-20 102.1 252 35.3
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-19 101.7 186 32.8
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 8.1e-18 95.5 161 36.6
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.6e-16 90.5 78 55.1
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.4e-15 85.9 171 49.1
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 2.1e-10 70.9 126 37.3
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.8e-09 67.8 221 26.7
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 2.0e-08 64.3 170 29.4
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 4.5e-08 63.2 118 51.7
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 7.6e-08 62.4 197 28.9


User provided reference genes

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