Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 0.0e+00 1479.9 747 100.0
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 0.0e+00 1160.6 689 86.1
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 0.0e+00 1078.5 690 81.0
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 9.9e-282 973.4 677 74.3
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 7.4e-277 957.2 693 71.7
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 1.2e-271 939.9 677 72.1
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 1.2e-271 939.9 684 71.5
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 1.8e-270 936.0 674 71.1
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.9e-240 836.3 694 64.7
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.8e-214 750.0 621 62.2
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 4.4e-213 745.3 614 64.5
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 1.7e-212 743.4 689 57.2
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 7.0e-211 738.0 631 60.9
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 5.6e-208 728.4 671 57.5
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.6e-207 726.9 705 56.0
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 2.1e-207 726.5 646 57.6
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 4.7e-207 725.3 602 61.5
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 2.6e-205 719.5 611 59.2
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 7.5e-205 718.0 679 57.3
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 2.2e-204 716.5 647 58.6
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 2.2e-204 716.5 636 58.3
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.9e-204 715.3 758 52.5
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 4.9e-204 715.3 609 60.6
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 8.3e-204 714.5 702 53.4
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 3.5e-202 709.1 609 58.6
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 6.6e-201 704.9 641 58.7
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 6.6e-201 704.9 677 55.1
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.1e-200 704.1 676 56.8
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 2.5e-200 703.0 641 57.4
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 2.8e-199 699.5 687 53.4
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 8.0e-199 698.0 617 56.6
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.4e-198 697.2 641 57.7
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.2e-197 694.1 699 54.4
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 1.2e-197 694.1 591 57.9
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 1.5e-197 693.7 584 60.6
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 5.8e-197 691.8 680 54.1
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 3.7e-196 689.1 588 58.7
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.9e-195 686.8 578 58.8
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 2.4e-195 686.4 648 54.9
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 4.6e-194 682.2 549 61.4
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 1.0e-193 681.0 588 58.0
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.0e-193 681.0 648 56.8
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 2.3e-193 679.9 613 57.1
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 3.9e-193 679.1 646 55.6
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 5.1e-193 678.7 611 57.4
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 2.1e-191 673.3 623 57.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 4.7e-191 672.2 645 55.5
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.5e-189 667.2 682 52.3
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 2.0e-189 666.8 686 53.4
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 2.6e-189 666.4 645 54.6
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 3.4e-189 666.0 643 54.1
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 9.9e-189 664.5 673 52.9
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.3e-188 664.1 611 55.6
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 1.7e-188 663.7 594 56.4
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 3.7e-188 662.5 632 54.6
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 8.3e-188 661.4 701 51.6
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 3.2e-187 659.4 599 55.9
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 4.1e-187 659.1 595 56.3
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 5.4e-187 658.7 673 52.6
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 5.4e-187 658.7 641 54.3
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 6.0e-186 655.2 574 57.3
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.0e-185 654.4 660 54.5
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 3.0e-185 652.9 644 53.1
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 3.9e-185 652.5 698 51.1
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 5.1e-185 652.1 648 53.1
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.5e-181 640.6 611 54.7
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 9.9e-181 637.9 704 50.3
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 1.1e-179 634.4 589 55.5
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 1.3e-177 627.5 654 51.7
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 9.6e-176 621.3 609 53.7
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 1.2e-175 620.9 761 46.5
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 6.9e-174 615.1 634 51.4
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 6.9e-174 615.1 391 78.0
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 2.6e-173 613.2 605 54.2
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 1.6e-170 604.0 553 55.9
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.1e-170 603.6 613 52.0
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.3e-169 600.1 599 52.9
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.3e-169 600.1 627 51.5
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 6.2e-167 592.0 602 52.3
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.4e-163 580.9 978 39.2
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.4e-163 580.1 587 52.0
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 9.6e-160 568.2 696 45.4
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.3e-159 567.8 646 47.5
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 4.0e-158 562.8 644 48.3
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 3.3e-152 543.1 649 46.8
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 9.6e-152 541.6 640 49.1
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 2.6e-149 533.5 706 45.5
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.7e-148 530.8 655 46.1
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 3.2e-147 526.6 687 44.1
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.6e-146 524.2 718 43.9
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 5.1e-145 519.2 597 46.7
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 6.7e-145 518.8 584 47.1
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 2.6e-141 506.9 309 82.8
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.1e-139 501.5 584 47.4
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.9e-139 500.7 561 45.1
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 1.1e-134 485.0 586 47.1
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.7e-132 477.6 374 61.8
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 3.8e-132 476.5 471 52.7
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 1.4e-131 474.6 304 83.2
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.8e-129 467.6 661 40.5
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 4.1e-126 456.4 372 59.7
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 6.5e-116 422.5 294 75.5
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.0e-113 413.3 503 45.1
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.7e-108 397.9 527 46.5
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.5e-104 384.8 322 60.6
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.0e-101 374.4 297 60.3
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 2.7e-101 374.0 342 56.1
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 3.5e-101 373.6 584 41.6
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 2.8e-98 364.0 309 58.9
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.0e-96 357.8 328 55.8
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.3e-92 344.4 482 41.5
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 7.5e-88 329.3 434 39.6
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 3.2e-86 323.9 526 38.2
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.2e-85 322.0 345 51.0
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 3.5e-85 320.5 502 37.1
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.5e-83 315.1 444 43.9
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 9.5e-83 312.4 328 54.3
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 5.8e-80 303.1 193 81.9
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.5e-77 293.9 645 32.6
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.2e-69 268.9 405 42.0
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 4.6e-69 266.9 596 29.5
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 4.4e-64 250.4 287 50.2
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 2.7e-61 241.1 284 47.9
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 5.4e-54 216.9 159 65.4
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 9.3e-54 216.1 154 70.8
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.3e-54 216.1 214 52.8
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 6.6e-52 209.9 154 66.9
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 1.1e-51 209.1 240 50.0
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.1e-50 204.9 151 62.9
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.4e-47 193.0 131 67.9
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 1.4e-46 192.2 271 43.9
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.5e-43 182.2 233 44.2
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 8.1e-42 176.4 271 42.8
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 8.1e-42 176.4 332 39.8
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.8e-40 170.2 194 47.9
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 8.4e-31 139.8 90 80.0
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 5.5e-30 137.1 126 58.7
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.8e-28 132.1 110 60.0
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 5.7e-27 127.1 297 31.3
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.3e-26 125.9 88 68.2
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 2.4e-25 121.7 211 36.0
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.2e-22 110.9 85 62.4
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 9.4e-22 109.8 133 48.9
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.9e-20 104.4 211 37.0
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 7.4e-19 100.1 86 61.6
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 6.3e-18 97.1 156 37.8
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.6e-16 91.7 74 62.2
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 3.4e-16 91.3 75 62.7
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.1e-14 86.3 109 46.8
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.5e-14 85.1 100 48.0
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.1e-09 69.7 78 48.7
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.1e-09 67.8 91 46.2
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.5e-08 65.9 101 39.6


User provided reference genes

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