Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g035950 Medicago truncatula HOM05D002917 ORTHO05D002431 3.9e-44 181.0 87 100.0
Medtr2g036020 Medicago truncatula HOM05D002917 ORTHO05D002431 1.7e-39 165.6 87 89.7
Medtr2g035990 Medicago truncatula HOM05D002917 ORTHO05D002431 6.4e-39 163.7 87 88.5
Lalb_Chr08g0238811 Lupinus albus HOM05D002917 ORTHO05D002431 8.4e-15 83.6 101 47.5
Medtr3g094970 Medicago truncatula HOM05D002917 ORTHO05D002431 1.1e-14 83.2 99 47.5
Glyma.04G219000 Glycine max HOM05D002917 ORTHO05D002431 2.4e-14 82.0 100 45.0
Migut.L00070 Erythranthe guttata HOM05D002917 ORTHO05D002431 3.2e-14 81.6 98 44.9
Oeu056493.1 Olea europaea HOM05D002917 ORTHO05D002431 3.2e-14 81.6 98 48.0
Glyma.06G146800 Glycine max HOM05D002917 ORTHO05D002431 5.4e-14 80.9 101 45.5
Oeu028368.1 Olea europaea HOM05D002917 ORTHO05D002431 1.2e-13 79.7 98 44.9
VMungo1309G1910 Vigna mungo HOM05D002917 ORTHO05D002431 1.2e-13 79.7 103 44.7
Lalb_Chr13g0296221 Lupinus albus HOM05D002917 ORTHO05D002431 1.6e-13 79.3 101 44.6
Lalb_Chr12g0203511 Lupinus albus HOM05D002917 ORTHO05D002431 2.7e-13 78.6 101 42.6
MD15G1332200 Malus domestica HOM05D002917 ORTHO05D002431 2.7e-13 78.6 97 45.4
SalBow5G5446 Salvia bowleyana HOM05D002917 ORTHO05D002431 2.7e-13 78.6 99 45.5
Dinv19484 Davidia involucrata HOM05D002917 ORTHO05D002431 3.5e-13 78.2 97 44.3
HanXRQChr09g0259721 Helianthus annuus HOM05D002917 ORTHO05D002431 3.5e-13 78.2 103 40.8
MD01G1020100 Malus domestica HOM05D002917 ORTHO05D002431 3.5e-13 78.2 97 45.4
Glyma.08G142000 Glycine max HOM05D002917 ORTHO05D002431 7.8e-13 77.0 101 42.6
Hma1.2p1_0375F.1_g138750 Hydrangea macrophylla HOM05D002917 ORTHO05D002431 7.8e-13 77.0 98 42.9
TPR.G23761 Trifolium pratense HOM05D002917 ORTHO05D002431 7.8e-13 77.0 96 47.9
Nitab4.5_0004378g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 1.0e-12 76.6 100 43.0
TWI53G0786 Tripterygium wilfordii HOM05D002917 ORTHO05D002431 1.3e-12 76.3 100 43.0
TAR625G0139 Trochodendron aralioides HOM05D002917 ORTHO05D002431 1.3e-12 76.3 103 44.7
DCAR_014262 Daucus carota HOM05D002917 ORTHO05D002431 1.7e-12 75.9 97 44.3
TWI74G1161 Tripterygium wilfordii HOM05D002917 ORTHO05D002431 1.7e-12 75.9 100 43.0
ECA238G1147 Erigeron canadensis HOM05D002917 ORTHO05D002431 2.3e-12 75.5 100 43.0
Lj4g0006175 Lotus japonicus HOM05D002917 ORTHO05D002431 2.3e-12 75.5 100 41.0
GSVIVG01022234001 Vitis vinifera HOM05D002917 ORTHO05D002431 3.9e-12 74.7 97 44.3
EL10Ac6g14757 Beta vulgaris HOM05D002917 ORTHO05D002431 6.6e-12 73.9 97 43.3
Phvul.002G265100 Phaseolus vulgaris HOM05D002917 ORTHO05D002431 6.6e-12 73.9 100 43.0
Prupe.6G172200 Prunus persica HOM05D002917 ORTHO05D002431 6.6e-12 73.9 99 42.4
Cpa.g.sc191.8 Carica papaya HOM05D002917 ORTHO05D002431 1.1e-11 73.2 99 42.4
CsaV3_2G017680 Cucumis sativus L. HOM05D002917 ORTHO05D002431 1.5e-11 72.8 103 40.8
Cc07_g16300 Coffea canephora HOM05D002917 ORTHO05D002431 1.9e-11 72.4 98 41.8
MELO3C020960.2 Cucumis melo HOM05D002917 ORTHO05D002431 1.9e-11 72.4 103 42.7
Migut.H02440 Erythranthe guttata HOM05D002917 ORTHO05D002431 1.9e-11 72.4 97 43.3
Eucgr.I00320 Eucalyptus grandis HOM05D002917 ORTHO05D002431 1.9e-11 72.4 97 42.3
MSTRG.2528 Avicennia marina HOM05D002917 ORTHO05D002431 2.5e-11 72.0 99 43.4
Manes.12G143000 Manihot esculenta HOM05D002917 ORTHO05D002431 3.3e-11 71.6 102 39.2
Nitab4.5_0004840g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 3.3e-11 71.6 102 41.2
Nitab4.5_0007284g0050 Nicotiana tabacum HOM05D002917 ORTHO05D002431 4.3e-11 71.2 102 41.2
ClCG02G001020 Citrullus lanatus HOM05D002917 ORTHO05D002431 5.6e-11 70.9 103 40.8
Gohir.A02G135500 Gossypium hirsutum HOM05D002917 ORTHO05D002431 5.6e-11 70.9 100 41.0
Gohir.D03G046500 Gossypium hirsutum HOM05D002917 ORTHO05D002431 5.6e-11 70.9 100 41.0
Sed0016172 Sechium edule HOM05D002917 ORTHO05D002431 5.6e-11 70.9 103 40.8
vmacro12899 Vaccinium macrocarpon HOM05D002917 ORTHO05D002431 5.6e-11 70.9 92 43.5
MBI02_g18928_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 7.3e-11 70.5 90 45.6
CiPaw.04G091400 Carya illinoinensis HOM05D002917 ORTHO05D002431 9.6e-11 70.1 101 40.6
Peaxi162Scf00359g00124 Petunia axillaris HOM05D002917 ORTHO05D002431 9.6e-11 70.1 101 40.6
SGA_v2.0_scaffold47G17704 Striga asiatica HOM05D002917 ORTHO05D002431 1.3e-10 69.7 93 40.9
TPR.G2220 Trifolium pratense HOM05D002917 ORTHO05D002431 1.3e-10 69.7 104 39.4
Duzib187G0794 Durio zibethinus HOM05D002917 ORTHO05D002431 1.6e-10 69.3 99 40.4
FAN23G2482 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.6e-10 69.3 99 44.4
FAN28G1462 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.6e-10 69.3 99 44.4
Psat5g066200 Pisum sativum HOM05D002917 ORTHO05D002431 1.6e-10 69.3 92 43.5
RcHm_v2.0_Chr2g0116611 Rosa chinensis HOM05D002917 ORTHO05D002431 1.6e-10 69.3 103 43.7
AL8G42330 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 2.1e-10 68.9 111 40.5
FvH4_1g22590 Fragaria vesca HOM05D002917 ORTHO05D002431 2.1e-10 68.9 103 42.7
HanXRQChr14g0446091 Helianthus annuus HOM05D002917 ORTHO05D002431 2.1e-10 68.9 100 42.0
TAR628G1039 Trochodendron aralioides HOM05D002917 ORTHO05D002431 2.1e-10 68.9 91 44.0
CSS0046773 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 2.8e-10 68.6 99 39.4
CiPaw.03G134100 Carya illinoinensis HOM05D002917 ORTHO05D002431 2.8e-10 68.6 110 38.2
DCAR_001372 Daucus carota HOM05D002917 ORTHO05D002431 3.6e-10 68.2 98 40.8
Sed0016541 Sechium edule HOM05D002917 ORTHO05D002431 3.6e-10 68.2 101 41.6
AT5G64850 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 4.8e-10 67.8 111 39.6
Lj1g0001228 Lotus japonicus HOM05D002917 ORTHO05D002431 4.8e-10 67.8 61 57.4
Medtr8g091930 Medicago truncatula HOM05D002917 ORTHO05D002431 4.8e-10 67.8 108 38.0
PGR004G1449 Punica granatum HOM05D002917 ORTHO05D002431 4.8e-10 67.8 99 41.4
arahy.Tifrunner.gnm1.ann1.CBHP4D Arachis hypogaea HOM05D002917 ORTHO05D002431 6.2e-10 67.4 107 36.4
BcaB05g21518 Brassica carinata HOM05D002917 ORTHO05D002431 6.2e-10 67.4 111 38.7
CANSAT01G0734 Cannabis sativa HOM05D002917 ORTHO05D002431 6.2e-10 67.4 102 41.2
Nn1g05176 Nelumbo nucifera HOM05D002917 ORTHO05D002431 6.2e-10 67.4 97 41.2
Sopen04g023160 Solanum pennellii HOM05D002917 ORTHO05D002431 6.2e-10 67.4 97 40.2
PSO170G5757 Papaver somniferum HOM05D002917 ORTHO05D002431 8.1e-10 67.0 97 42.3
CAN.G1619.3 Capsicum annuum HOM05D002917 ORTHO05D002431 1.8e-09 65.9 88 45.5
PSO541G0125 Papaver somniferum HOM05D002917 ORTHO05D002431 2.4e-09 65.5 88 40.9
PSO675G5205 Papaver somniferum HOM05D002917 ORTHO05D002431 2.4e-09 65.5 88 40.9
Peaxi162Scf00133g01414 Petunia axillaris HOM05D002917 ORTHO05D002431 2.4e-09 65.5 95 40.0
SGA_v2.0_scaffold51G18757 Striga asiatica HOM05D002917 ORTHO05D000111 2.4e-09 65.5 61 57.4
Phvul.009G139200 Phaseolus vulgaris HOM05D002917 ORTHO05D002431 3.1e-09 65.1 61 55.7
Potri.007G080800 Populus trichocarpa HOM05D002917 ORTHO05D002431 3.1e-09 65.1 102 38.2
THA.LOC104819311 Tarenaya hassleriana HOM05D002917 ORTHO05D002431 3.1e-09 65.1 109 39.4
BcaNung06988 Brassica carinata HOM05D002917 ORTHO05D002431 4.0e-09 64.7 112 40.2
CARHR203370 Cardamine hirsuta HOM05D002917 ORTHO05D002431 4.0e-09 64.7 114 40.4
Thhalv10015061m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 4.0e-09 64.7 111 40.5
Lsat_1_v5_gn_1_14961 Lactuca sativa HOM05D002917 ORTHO05D002431 4.0e-09 64.7 97 41.2
THA.LOC104799275 Tarenaya hassleriana HOM05D002917 ORTHO05D002431 4.0e-09 64.7 101 38.6
Thecc.01G113600 Theobroma cacao HOM05D002917 ORTHO05D002431 4.0e-09 64.7 99 38.4
arahy.Tifrunner.gnm1.ann1.9R5XSH Arachis hypogaea HOM05D002917 ORTHO05D002431 5.3e-09 64.3 61 55.7
A02p00260 Brassica napus HOM05D002917 ORTHO05D002431 5.3e-09 64.3 112 39.3
BraA02t05010Z Brassica rapa HOM05D002917 ORTHO05D002431 5.3e-09 64.3 112 39.3
Sp6g33460 Schrenkiella parvula HOM05D002917 ORTHO05D002431 5.3e-09 64.3 111 40.5
C02p04170 Brassica napus HOM05D002917 ORTHO05D002431 9.0e-09 63.5 112 39.3
CARHR278860 Cardamine hirsuta HOM05D002917 ORTHO05D002431 9.0e-09 63.5 112 39.3
CsaV3_6G042410 Cucumis sativus L. HOM05D002917 ORTHO05D002431 9.0e-09 63.5 101 38.6
Potri.005G084700 Populus trichocarpa HOM05D002917 ORTHO05D002431 9.0e-09 63.5 100 38.0
Solyc04g011910.3 Solanum lycopersicum HOM05D002917 ORTHO05D002431 9.0e-09 63.5 95 42.1
Sopen04g006050 Solanum pennellii HOM05D002917 ORTHO05D002431 9.0e-09 63.5 95 42.1
BcaC03g13286 Brassica carinata HOM05D002917 ORTHO05D002431 1.2e-08 63.2 112 39.3
A10p27540 Brassica napus HOM05D002917 ORTHO05D002431 1.2e-08 63.2 111 39.6
BraA10t44806Z Brassica rapa HOM05D002917 ORTHO05D002431 1.2e-08 63.2 111 39.6
Dinv42690 Davidia involucrata HOM05D002917 ORTHO05D002431 1.2e-08 63.2 61 55.7
BcaB04g19997 Brassica carinata HOM05D002917 ORTHO05D002431 1.5e-08 62.8 108 40.7
C09p67610 Brassica napus HOM05D002917 ORTHO05D002431 1.5e-08 62.8 112 39.3
Medtr3g094890 Medicago truncatula HOM05D002917 ORTHO05D002431 1.5e-08 62.8 84 40.5
Sc03g0004380 Simmondsia chinensis HOM05D002917 ORTHO05D002431 1.5e-08 62.8 96 38.5
BolC2t06380H Brassica oleracea HOM05D002917 ORTHO05D002431 2.0e-08 62.4 106 37.7
ECA232G3996 Erigeron canadensis HOM05D002917 ORTHO05D002431 2.0e-08 62.4 62 53.2
Glyma.05G184200 Glycine max HOM05D002917 ORTHO05D002431 2.6e-08 62.0 61 52.5
SGA_v2.0_scaffold2G01294 Striga asiatica HOM05D002917 ORTHO05D002431 2.6e-08 62.0 95 42.1
AT5G09960 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 3.4e-08 61.6 111 40.5
Lsat_1_v5_gn_4_137421 Lactuca sativa HOM05D002917 ORTHO05D002431 3.4e-08 61.6 55 56.4
AL6G20380 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 4.4e-08 61.2 113 39.8
CSS0004580 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 4.4e-08 61.2 60 55.0
Carub.0008s2568 Capsella rubella HOM05D002917 ORTHO05D002431 4.4e-08 61.2 115 36.5
CAN.G1056.1 Capsicum annuum HOM05D002917 ORTHO05D002431 4.4e-08 61.2 90 42.2
Ciclev10026820m.g Citrus clementina HOM05D002917 ORTHO05D002431 4.4e-08 61.2 104 35.6
HanXRQChr15g0493491 Helianthus annuus HOM05D002917 ORTHO05D002431 4.4e-08 61.2 104 31.7
Sopen05g030180 Solanum pennellii HOM05D002917 ORTHO05D002431 4.4e-08 61.2 103 37.9
unitig_60.g25532 Utricularia gibba HOM05D000135 ORTHO05D002431 4.4e-08 61.2 89 43.8
Actinidia33358 Actinidia chinensis HOM05D002917 ORTHO05D002431 5.8e-08 60.8 56 55.4
Aa31LG3G17190 Aethionema arabicum HOM05D002917 ORTHO05D002431 5.8e-08 60.8 113 38.9
unitig_0.g480 Utricularia gibba HOM05D002917 ORTHO05D002431 5.8e-08 60.8 97 39.2
arahy.Tifrunner.gnm1.ann1.A4AUQP Arachis hypogaea HOM05D002917 ORTHO05D002431 7.6e-08 60.5 55 58.2
BcaC04g23276 Brassica carinata HOM05D002917 ORTHO05D002431 7.6e-08 60.5 108 38.9
CSS0021781 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 7.6e-08 60.5 98 38.8
CDE05G1218 Ceratophyllum demersum HOM05D002917 ORTHO05D002431 7.6e-08 60.5 88 40.9
COL.COLO4_11006 Corchorus olitorius HOM05D002917 ORTHO05D002431 7.6e-08 60.5 57 54.4
Gorai.003G047500 Gossypium raimondii HOM05D002917 ORTHO05D002431 7.6e-08 60.5 57 54.4
Os03g0169900 Oryza sativa ssp. japonica HOM05D002917 ORTHO05D002431 7.6e-08 60.5 100 39.0
Psat7g051000 Pisum sativum HOM05D002917 ORTHO05D002431 7.6e-08 60.5 103 35.0
CDE05G1734 Ceratophyllum demersum HOM05D002917 ORTHO05D002431 9.9e-08 60.1 88 39.8
Solyc05g051710.4 Solanum lycopersicum HOM05D002917 ORTHO05D002431 1.3e-07 59.7 103 36.9
Carub.0006s0840 Capsella rubella HOM05D002917 ORTHO05D002431 1.7e-07 59.3 111 39.6
QL06p032044 Quercus lobata HOM05D002917 ORTHO05D002431 1.7e-07 59.3 128 33.6
PGSC0003DMG400016551 Solanum tuberosum HOM05D002917 ORTHO05D002431 1.7e-07 59.3 55 56.4
TAR381G1174 Trochodendron aralioides HOM05D002917 ORTHO05D002431 1.7e-07 59.3 107 36.4
Actinidia28896 Actinidia chinensis HOM05D002917 ORTHO05D002431 2.2e-07 58.9 97 37.1
BcaC01g02719 Brassica carinata HOM05D002917 ORTHO05D002431 2.2e-07 58.9 108 38.0
C03p61320 Brassica napus HOM05D002917 ORTHO05D002431 2.2e-07 58.9 108 38.0
BolC3t18392H Brassica oleracea HOM05D002917 ORTHO05D002431 2.2e-07 58.9 108 38.0
BraA06t26100Z Brassica rapa HOM05D002917 ORTHO05D002431 2.2e-07 58.9 108 38.0
Sabra07G0067800 Salix brachista HOM05D002917 ORTHO05D002431 2.2e-07 58.9 91 41.8
BolC2t12428H Brassica oleracea HOM05D002917 ORTHO05D002431 2.9e-07 58.5 114 36.0
MELO3C007484.2 Cucumis melo HOM05D002917 ORTHO05D002431 2.9e-07 58.5 102 36.3
Zm00001eb402300 Zea mays HOM05D002917 ORTHO05D002431 3.8e-07 58.2 100 39.0
FAN19G2300 Fragaria x ananassa HOM05D002917 ORTHO05D002431 4.9e-07 57.8 62 53.2
FAN26G2985 Fragaria x ananassa HOM05D002917 ORTHO05D002431 4.9e-07 57.8 62 53.2
FAN28G1232 Fragaria x ananassa HOM05D002917 ORTHO05D002431 4.9e-07 57.8 62 53.2
ClCG01G016140 Citrullus lanatus HOM05D002917 ORTHO05D002431 6.4e-07 57.4 101 35.6
Sp2g27930 Schrenkiella parvula HOM05D002917 ORTHO05D002431 6.4e-07 57.4 109 37.6
BcaB07g29762 Brassica carinata HOM05D002917 ORTHO05D002431 8.4e-07 57.0 107 35.5
BcaC03g18283 Brassica carinata HOM05D002917 ORTHO05D002431 8.4e-07 57.0 113 33.6
A02p43530 Brassica napus HOM05D002917 ORTHO05D002431 8.4e-07 57.0 113 33.6
MBI05_g00334_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 8.4e-07 57.0 58 56.9
Nitab4.5_0000818g0190 Nicotiana tabacum HOM05D002917 ORTHO05D002431 8.4e-07 57.0 86 41.9
Rhsim10G0149900 Rhododendron simsii HOM05D002917 ORTHO05D002431 8.4e-07 57.0 56 53.6
PGSC0003DMG400030107 Solanum tuberosum HOM05D002917 ORTHO05D002431 8.4e-07 57.0 56 51.8
A09p08870 Brassica napus HOM05D002917 ORTHO05D002431 1.1e-06 56.6 59 57.6
C02p63620 Brassica napus HOM05D002917 ORTHO05D002431 1.1e-06 56.6 114 33.3
C09p10290 Brassica napus HOM05D002917 ORTHO05D002431 1.1e-06 56.6 59 57.6
BolC9t53929H Brassica oleracea HOM05D002917 ORTHO05D002431 1.1e-06 56.6 59 57.6
BraA09t36538Z Brassica rapa HOM05D002917 ORTHO05D002431 1.1e-06 56.6 59 57.6
vmacro18635 Vaccinium macrocarpon HOM05D002917 ORTHO05D002431 1.1e-06 56.6 58 48.3
Haze_25049 Corylus avellana HOM05D002917 ORTHO05D002431 1.4e-06 56.2 56 55.4
Nn5g28892 Nelumbo nucifera HOM05D002917 ORTHO05D002431 1.9e-06 55.8 53 54.7
VMungo0251G0645 Vigna mungo HOM05D002917 ORTHO05D002431 1.9e-06 55.8 52 55.8
Aqoxy6G00467 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 2.4e-06 55.5 49 59.2
BraA02t09281Z Brassica rapa HOM05D002917 ORTHO05D002431 2.4e-06 55.5 59 52.5
Os10g0405300 Oryza sativa ssp. japonica HOM05D002917 ORTHO05D002431 2.4e-06 55.5 97 38.1
Gohir.A12G092400 Gossypium hirsutum HOM05D002917 ORTHO05D002431 3.2e-06 55.1 102 36.3
HPP92_027833 Vanilla planifolia HOM05D002917 ORTHO05D002431 3.2e-06 55.1 88 39.8
A06p31640 Brassica napus HOM05D002917 ORTHO05D002431 5.4e-06 54.3 59 54.2
Thhalv10005264m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 5.4e-06 54.3 59 54.2
Aa31LG1G17080 Aethionema arabicum HOM05D002917 ORTHO05D002431 9.3e-06 53.5 64 51.6


User provided reference genes

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