Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g033055 Medicago truncatula HOM05D000747 ORTHO05D004807 1.1e-284 982.6 502 100.0
Psat1g162680 Pisum sativum HOM05D000747 ORTHO05D004807 2.8e-179 632.5 390 83.8
Medtr2g033040 Medicago truncatula HOM05D000747 ORTHO05D004807 2.4e-178 629.4 390 83.8
Ca_00947_v3 Cicer arietinum L. HOM05D000747 ORTHO05D004807 1.1e-175 620.5 390 82.3
TPR.G10108 Trifolium pratense HOM05D000747 ORTHO05D004807 1.3e-171 607.1 390 81.0
Lj6g0013861 Lotus japonicus HOM05D000747 ORTHO05D004807 8.2e-163 577.8 394 76.9
Lalb_Chr15g0089041 Lupinus albus HOM05D000747 ORTHO05D004807 8.4e-160 567.8 393 75.1
Glyma.15G137000 Glycine max HOM05D000747 ORTHO05D004807 1.1e-159 567.4 394 74.9
Phvul.006G120900 Phaseolus vulgaris HOM05D000747 ORTHO05D004807 3.0e-157 559.3 394 74.1
arahy.Tifrunner.gnm1.ann1.NSV5VW Arachis hypogaea HOM05D000747 ORTHO05D004807 4.8e-155 552.0 394 73.1
arahy.Tifrunner.gnm1.ann1.CPQB8S Arachis hypogaea HOM05D000747 ORTHO05D004807 6.1e-150 535.0 412 68.9
arahy.Tifrunner.gnm1.ann1.YUC3W2 Arachis hypogaea HOM05D000747 ORTHO05D004807 2.6e-145 519.6 394 68.8
arahy.Tifrunner.gnm1.ann1.R130QB Arachis hypogaea HOM05D000747 ORTHO05D004807 7.7e-145 518.1 394 68.8
Glyma.17G037600 Glycine max HOM05D000747 ORTHO05D004807 1.1e-138 497.7 394 66.5
Glyma.07G235800 Glycine max HOM05D000747 ORTHO05D004807 1.8e-138 496.9 394 66.8
QL06p013303 Quercus lobata HOM05D000747 ORTHO05D004807 1.2e-134 484.2 393 65.6
VMungo1215G1053 Vigna mungo HOM05D000747 ORTHO05D004807 2.7e-134 483.0 394 65.5
CiPaw.01G133500 Carya illinoinensis HOM05D000747 ORTHO05D004807 4.7e-134 482.3 395 64.6
RcHm_v2.0_Chr4g0426201 Rosa chinensis HOM05D000747 ORTHO05D004807 1.1e-130 471.1 396 63.6
FvH4_4g20760 Fragaria vesca HOM05D000747 ORTHO05D004807 3.5e-129 466.1 396 62.6
Phvul.003G118500 Phaseolus vulgaris HOM05D000747 ORTHO05D004807 2.2e-128 463.4 394 63.7
FAN17G1353 Fragaria x ananassa HOM05D000747 ORTHO05D004807 3.8e-128 462.6 415 60.0
Thecc.04G307300 Theobroma cacao HOM05D000747 ORTHO05D004807 6.5e-128 461.8 396 62.4
CANSAT78G0170 Cannabis sativa HOM05D000747 ORTHO05D004807 1.1e-127 461.1 395 61.5
FAN07G0175 Fragaria x ananassa HOM05D000747 ORTHO05D004807 1.9e-127 460.3 396 61.9
Prupe.1G111600 Prunus persica HOM05D000747 ORTHO05D004807 2.7e-126 456.4 400 62.8
Gorai.011G204200 Gossypium raimondii HOM05D000747 ORTHO05D004807 8.0e-126 454.9 395 61.5
MD16G1148200 Malus domestica HOM05D000747 ORTHO05D004807 8.0e-126 454.9 397 63.0
Gohir.A10G175700 Gossypium hirsutum HOM05D000747 ORTHO05D004807 1.4e-125 454.1 395 61.3
Gorai.006G265700 Gossypium raimondii HOM05D000747 ORTHO05D004807 4.0e-125 452.6 394 61.7
Gohir.D10G182300 Gossypium hirsutum HOM05D000747 ORTHO05D004807 6.7e-125 451.8 395 61.3
COL.COLO4_34559 Corchorus olitorius HOM05D000747 ORTHO05D004807 8.8e-125 451.4 394 61.2
Gohir.D09G242100 Gossypium hirsutum HOM05D000747 ORTHO05D004807 5.7e-124 448.7 395 61.5
MD13G1148100 Malus domestica HOM05D000747 ORTHO05D004807 7.5e-124 448.4 396 61.1
Atru.chr4.3105 Acer truncatum HOM05D000747 ORTHO05D004807 1.7e-123 447.2 395 61.3
Gohir.A09G241400 Gossypium hirsutum HOM05D000747 ORTHO05D004807 1.7e-123 447.2 394 61.9
Haze_00834 Corylus avellana HOM05D000747 ORTHO05D004807 5.3e-122 442.2 393 60.8
Duzib151G0433 Durio zibethinus HOM05D000747 ORTHO05D004807 1.6e-121 440.7 394 59.6
Dinv15128 Davidia involucrata HOM05D000747 ORTHO05D004807 4.5e-121 439.1 396 59.6
GSVIVG01034942001 Vitis vinifera HOM05D000747 ORTHO05D004807 1.0e-120 438.0 396 60.4
CSS0023043 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D004807 2.9e-120 436.4 394 60.4
TWI53G1735 Tripterygium wilfordii HOM05D000747 ORTHO05D004807 2.9e-120 436.4 394 59.4
Duzib052G0753 Durio zibethinus HOM05D000747 ORTHO05D004807 4.2e-119 432.6 394 58.9
Actinidia18481 Actinidia chinensis HOM05D000747 ORTHO05D004807 7.2e-119 431.8 401 58.9
Ciclev10004231m.g Citrus clementina HOM05D000747 ORTHO05D004807 7.2e-119 431.8 397 59.9
Manes.03G208600 Manihot esculenta HOM05D000747 ORTHO05D004807 7.2e-119 431.8 394 59.9
Sed0005984 Sechium edule HOM05D000747 ORTHO05D004807 2.7e-118 429.9 395 57.2
TAR633G1529 Trochodendron aralioides HOM05D000747 ORTHO05D004807 4.7e-118 429.1 396 58.1
Duzib212G0904 Durio zibethinus HOM05D000747 ORTHO05D004807 6.1e-118 428.7 402 59.2
Sed0003045 Sechium edule HOM05D000747 ORTHO05D004807 1.4e-117 427.6 396 57.8
MELO3C021252.2 Cucumis melo HOM05D000747 ORTHO05D004807 1.8e-117 427.2 400 56.2
TAR362G0993 Trochodendron aralioides HOM05D000747 ORTHO05D004807 6.8e-117 425.2 394 58.6
Eucgr.B03986 Eucalyptus grandis HOM05D000747 ORTHO05D004807 5.7e-116 422.2 395 57.0
Hma1.2p1_1096F.1_g256630 Hydrangea macrophylla HOM05D000747 ORTHO05D004807 7.5e-116 421.8 394 58.6
Potri.010G150000 Populus trichocarpa HOM05D000747 ORTHO05D004807 2.2e-115 420.2 384 58.6
Cpa.g.sc146.73 Carica papaya HOM05D000747 ORTHO05D004807 2.4e-114 416.8 401 56.9
Sabra10G0115600 Salix brachista HOM05D000747 ORTHO05D004807 2.0e-113 413.7 395 57.7
Nn3g21805 Nelumbo nucifera HOM05D000747 ORTHO05D004807 1.3e-112 411.0 398 59.0
MBI18_g27389_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D004807 3.8e-112 409.5 379 58.3
THA.LOC104820321 Tarenaya hassleriana HOM05D000747 ORTHO05D004807 6.6e-112 408.7 393 58.5
Potri.008G101300 Populus trichocarpa HOM05D000747 ORTHO05D004807 1.5e-111 407.5 395 56.7
Oeu052157.1 Olea europaea HOM05D000747 ORTHO05D004807 1.9e-111 407.1 388 55.9
Sabra08G0076600 Salix brachista HOM05D000747 ORTHO05D004807 4.2e-111 406.0 395 56.7
Peaxi162Scf00126g01514 Petunia axillaris HOM05D000747 ORTHO05D004807 9.5e-111 404.8 391 57.0
CSS0019056 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D004807 1.2e-110 404.4 393 55.7
CAN.G170.17 Capsicum annuum HOM05D000747 ORTHO05D004807 5.2e-109 399.1 383 56.7
CAN.G170.20 Capsicum annuum HOM05D000747 ORTHO05D004807 5.2e-109 399.1 383 56.7
CAN.G3221.1 Capsicum annuum HOM05D000747 ORTHO05D004807 5.2e-109 399.1 383 56.7
AL3G30230 Arabidopsis lyrata HOM05D000747 ORTHO05D004807 6.8e-109 398.7 391 55.0
Sc25g0001570 Simmondsia chinensis HOM05D000747 ORTHO05D004807 6.8e-109 398.7 400 54.0
Solyc01g057900.3 Solanum lycopersicum HOM05D000747 ORTHO05D004807 8.9e-109 398.3 383 56.7
Nitab4.5_0001334g0040 Nicotiana tabacum HOM05D000747 ORTHO05D004807 1.2e-108 397.9 391 56.3
Rhsim04G0243000 Rhododendron simsii HOM05D000747 ORTHO05D004807 1.2e-108 397.9 474 49.4
AT3G17205 Arabidopsis thaliana HOM05D000747 ORTHO05D004807 2.0e-108 397.1 393 56.5
Sopen01g023220 Solanum pennellii HOM05D000747 ORTHO05D004807 2.0e-108 397.1 383 56.4
AUR62030014 Chenopodium quinoa HOM05D000747 ORTHO05D004807 1.3e-107 394.4 395 54.2
Cc03_g00480 Coffea canephora HOM05D000747 ORTHO05D004807 2.2e-107 393.7 393 55.5
Carub.0003s1696 Capsella rubella HOM05D000747 ORTHO05D004807 3.7e-107 392.9 382 56.5
AUR62002590 Chenopodium quinoa HOM05D000747 ORTHO05D004807 8.3e-107 391.7 395 53.9
Sp3g15400 Schrenkiella parvula HOM05D000747 ORTHO05D004807 8.3e-107 391.7 383 57.2
vmacro07974 Vaccinium macrocarpon HOM05D000747 ORTHO05D004807 8.3e-107 391.7 348 61.2
BcaC05g28820 Brassica carinata HOM05D000747 ORTHO05D004807 2.4e-106 390.2 387 55.3
C05p49250 Brassica napus HOM05D000747 ORTHO05D004807 2.4e-106 390.2 387 55.3
BcaB06g25812 Brassica carinata HOM05D000747 ORTHO05D004807 9.2e-106 388.3 387 55.0
BolC5t33666H Brassica oleracea HOM05D000747 ORTHO05D004807 5.9e-105 385.6 387 54.8
A05p32580 Brassica napus HOM05D000747 ORTHO05D004807 2.3e-104 383.6 387 54.5
BraA05t22082Z Brassica rapa HOM05D000747 ORTHO05D004807 2.3e-104 383.6 387 54.5
DCAR_002525 Daucus carota HOM05D000747 ORTHO05D004807 2.3e-104 383.6 399 51.6
MSTRG.10174 Avicennia marina HOM05D000747 ORTHO05D004807 2.9e-104 383.3 390 53.6
EL10Ac3g06290 Beta vulgaris HOM05D000747 ORTHO05D004807 3.3e-103 379.8 395 53.4
Migut.G00024 Erythranthe guttata HOM05D000747 ORTHO05D004807 3.3e-103 379.8 396 51.8
ClCG06G004370 Citrullus lanatus HOM05D000747 ORTHO05D004807 6.1e-102 375.6 396 52.5
ECA233G3437 Erigeron canadensis HOM05D000747 ORTHO05D004807 2.3e-101 373.6 406 52.7
HanXRQChr06g0182841 Helianthus annuus HOM05D000747 ORTHO05D004807 4.0e-101 372.9 397 53.1
PGR031G1986 Punica granatum HOM05D000747 ORTHO05D004807 6.8e-101 372.1 395 51.1
SGA_v2.0_scaffold157G37358 Striga asiatica HOM05D000747 ORTHO05D004807 1.2e-100 371.3 390 51.0
Lsat_1_v5_gn_6_70541 Lactuca sativa HOM05D000747 ORTHO05D004807 2.6e-100 370.2 424 50.0
Aqoxy2G02629 Aquilegia oxysepala HOM05D000747 ORTHO05D004807 7.5e-100 368.6 407 50.9
Aa31LG8G4180 Aethionema arabicum HOM05D000747 ORTHO05D004807 9.8e-100 368.2 391 51.7
BcaC09g48678 Brassica carinata HOM05D000747 ORTHO05D004807 2.9e-99 366.7 394 52.5
C01p47020 Brassica napus HOM05D000747 ORTHO05D004807 2.9e-99 366.7 394 52.5
PSO761G0701 Papaver somniferum HOM05D000747 ORTHO05D004807 2.9e-99 366.7 388 52.3
PSO210G6954 Papaver somniferum HOM05D000747 ORTHO05D004807 3.7e-99 366.3 387 51.7
Nitab4.5_0005403g0020 Nicotiana tabacum HOM05D000747 ORTHO05D004807 1.1e-98 364.8 394 52.8
BolC1t04670H Brassica oleracea HOM05D000747 ORTHO05D004807 1.9e-98 364.0 394 52.5
BraA01t03772Z Brassica rapa HOM05D000747 ORTHO05D004807 2.4e-98 363.6 394 52.8
A01p37100 Brassica napus HOM05D000747 ORTHO05D004807 2.0e-97 360.5 394 52.8
ATR0693G276 Amborella trichopoda HOM05D000747 ORTHO05D004807 2.5e-95 353.6 392 48.7
Thhalv10019984m.g Eutrema salsugineum HOM05D000747 ORTHO05D004807 2.5e-95 353.6 383 53.0
BcaB04g20855 Brassica carinata HOM05D000747 ORTHO05D004807 5.6e-95 352.4 378 52.4
CDE11G0596 Ceratophyllum demersum HOM05D000747 ORTHO05D004807 1.1e-93 348.2 391 48.8
CDE05G1257 Ceratophyllum demersum HOM05D000747 ORTHO05D004807 4.1e-90 336.3 391 48.6
SalBow8G3583 Salvia bowleyana HOM05D000747 ORTHO05D004807 2.8e-86 323.6 348 51.7
Zm00001eb412620 Zea mays HOM05D000747 ORTHO05D004807 2.8e-86 323.6 394 45.9
Aqoxy5G03355 Aquilegia oxysepala HOM05D000747 ORTHO05D004807 8.1e-86 322.0 390 47.2
Ah.07g203890 Amaranthus hybridus HOM05D000747 ORTHO05D004807 4.4e-84 316.2 380 47.4
Os05g0159000 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D004807 2.2e-83 313.9 395 45.3
MD16G1155700 Malus domestica HOM05D000747 ORTHO05D004807 6.8e-77 292.4 394 46.2
unitig_88.g27699 Utricularia gibba HOM05D000747 ORTHO05D004807 1.9e-74 284.3 347 46.7
MD17G1270000 Malus domestica HOM05D000747 ORTHO05D004807 3.5e-73 280.0 265 58.1
HPP92_015995 Vanilla planifolia HOM05D000747 ORTHO05D004807 5.1e-72 276.2 394 43.1
Pp3c17_16520 Physcomitrium patens HOM05D000747 ORTHO05D004807 9.0e-69 265.4 399 41.1
Lj3A836G20 Lonicera japonica HOM05D000747 ORTHO05D004807 3.0e-64 250.4 214 60.7
Mapoly0140s0005 Marchantia polymorpha HOM05D000747 ORTHO05D004807 4.8e-62 243.0 409 38.1
AagrBONN_evm.TU.Sc2ySwM_340.498 Anthoceros agrestis HOM05D000747 ORTHO05D004807 1.7e-59 234.6 405 36.8
SEGI_11859 Sequoiadendron giganteum HOM05D000747 ORTHO05D004807 6.7e-56 222.6 229 49.3
Hund12236 Selenicereus undatus HOM05D000747 ORTHO05D004807 3.4e-52 210.3 210 54.8
SMO165G0153 Selaginella moellendorffii HOM05D000747 ORTHO05D004807 3.8e-51 206.8 388 34.5
Zm00001eb282520 Zea mays HOM05D000747 ORTHO05D004807 2.5e-50 204.1 310 39.7
Hund28791 Selenicereus undatus HOM05D000747 ORTHO05D004807 1.4e-42 178.3 182 54.9
Hund28792 Selenicereus undatus HOM05D000747 ORTHO05D004807 1.4e-42 178.3 182 54.9
SHI00092 Sapria himalayana HOM05D000747 ORTHO05D004807 3.7e-38 163.7 215 46.0
HPP92_015992 Vanilla planifolia HOM05D000747 ORTHO05D004807 3.1e-37 160.6 335 35.5
arahy.Tifrunner.gnm1.ann1.G3UT94 Arachis hypogaea HOM05D000747 ORTHO05D031555 8.2e-30 136.0 114 62.3
Lj3A836G21 Lonicera japonica HOM05D000747 ORTHO05D004807 1.8e-29 134.8 151 52.3
SEGI_11758 Sequoiadendron giganteum HOM05D000747 ORTHO05D004807 1.0e-27 129.0 172 44.8
Phvul.004G009400 Phaseolus vulgaris HOM05D000747 ORTHO05D031555 1.7e-27 128.3 101 66.3
SHI00091 Sapria himalayana HOM05D000747 ORTHO05D004807 2.5e-26 124.4 134 53.0
Actinidia31572 Actinidia chinensis HOM05D000747 ORTHO05D004807 4.7e-25 120.2 178 44.9
Lsat_1_v5_gn_6_107301 Lactuca sativa HOM05D000747 ORTHO05D004807 7.0e-21 106.3 166 43.4
CARHR092470 Cardamine hirsuta HOM05D000747 ORTHO05D004807 1.0e-19 102.4 101 50.5
Actinidia31580 Actinidia chinensis HOM05D000747 ORTHO05D004807 3.8e-19 100.5 176 39.2
VMungo1383G3016 Vigna mungo HOM05D000747 ORTHO05D009363 3.7e-14 84.0 68 60.3
VMungo1309G1015 Vigna mungo HOM05D000747 ORTHO05D009363 4.1e-13 80.5 175 33.1
Phvul.004G005500 Phaseolus vulgaris HOM05D000747 ORTHO05D031555 2.6e-12 77.8 73 61.6
CsaV3_5G020800 Cucumis sativus L. HOM05D000747 ORTHO05D004807 2.6e-07 61.2 80 46.2
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 2.2e-06 58.2 75 48.0


User provided reference genes

Program Settings