Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g031780 Medicago truncatula HOM05D000653 ORTHO05D003117 2.5e-30 134.8 70 100.0
Medtr2g031810 Medicago truncatula HOM05D000653 ORTHO05D003117 2.5e-30 134.8 70 100.0
Medtr2g031790 Medicago truncatula HOM05D000653 ORTHO05D003117 2.2e-29 131.7 70 98.6
TPR.G8037 Trifolium pratense HOM05D000653 ORTHO05D003117 9.1e-28 126.3 70 91.4
Lj6g0006989 Lotus japonicus HOM05D000653 ORTHO05D003117 2.6e-27 124.8 70 91.4
Ca_00921_v3 Cicer arietinum L. HOM05D000653 ORTHO05D003117 4.5e-27 124.0 70 91.4
Psat1g164600 Pisum sativum HOM05D000653 ORTHO05D003117 1.7e-26 122.1 70 87.1
Lalb_Chr18g0058271 Lupinus albus HOM05D000653 ORTHO05D003117 2.3e-23 111.7 70 80.0
Cfa016105 Carpinus fangiana HOM05D000653 ORTHO05D003117 3.3e-22 107.8 68 76.5
Haze_00353 Corylus avellana HOM05D000653 ORTHO05D003117 7.4e-22 106.7 68 75.0
Glyma.15G134900 Glycine max HOM05D000653 ORTHO05D003117 9.7e-22 106.3 70 80.0
Glyma.09G029100 Glycine max HOM05D000653 ORTHO05D003117 1.7e-21 105.5 70 77.1
Phvul.006G124000 Phaseolus vulgaris HOM05D000653 ORTHO05D003117 1.7e-21 105.5 70 77.1
VMungo0540G2287 Vigna mungo HOM05D000653 ORTHO05D003117 1.7e-21 105.5 69 78.3
arahy.Tifrunner.gnm1.ann1.5P912R Arachis hypogaea HOM05D000653 ORTHO05D003117 2.8e-21 104.8 70 77.1
arahy.Tifrunner.gnm1.ann1.8VMK61 Arachis hypogaea HOM05D000653 ORTHO05D003117 2.8e-21 104.8 70 77.1
CSS0018171 Camellia sinensis var. sinensis HOM05D000653 ORTHO05D003117 6.3e-21 103.6 66 75.8
Rhsim09G0214200 Rhododendron simsii HOM05D000653 ORTHO05D003117 8.2e-21 103.2 68 73.5
CSS0001916 Camellia sinensis var. sinensis HOM05D000653 ORTHO05D003117 1.1e-20 102.8 66 75.8
vmacro22189 Vaccinium macrocarpon HOM05D000653 ORTHO05D003117 3.1e-20 101.3 68 72.1
Oeu026683.2 Olea europaea HOM05D000653 ORTHO05D003117 6.9e-20 100.1 69 73.9
CSS0001707 Camellia sinensis var. sinensis HOM05D000653 ORTHO05D003117 1.2e-19 99.4 66 72.7
Duzib177G0045 Durio zibethinus HOM05D000653 ORTHO05D003117 2.6e-19 98.2 66 74.2
Thecc.05G226700 Theobroma cacao HOM05D000653 ORTHO05D003117 2.6e-19 98.2 66 74.2
Duzib128G1609 Durio zibethinus HOM05D000653 ORTHO05D003117 3.4e-19 97.8 66 75.8
GSVIVG01024264001 Vitis vinifera HOM05D000653 ORTHO05D003117 4.5e-19 97.4 70 71.4
SalBow5G1483 Salvia bowleyana HOM05D000653 ORTHO05D003117 7.7e-19 96.7 68 69.1
Actinidia33803 Actinidia chinensis HOM05D000653 ORTHO05D003117 1.0e-18 96.3 68 72.1
TAR629G3269 Trochodendron aralioides HOM05D000653 ORTHO05D003117 1.0e-18 96.3 70 70.0
Dinv29370 Davidia involucrata HOM05D000653 ORTHO05D003117 2.2e-18 95.1 69 69.6
Nitab4.5_0000021g0880 Nicotiana tabacum HOM05D000653 ORTHO05D003117 2.2e-18 95.1 69 65.2
Peaxi162Scf00516g00429 Petunia axillaris HOM05D000653 ORTHO05D003117 2.2e-18 95.1 69 66.7
Nitab4.5_0005545g0010 Nicotiana tabacum HOM05D000653 ORTHO05D003117 2.9e-18 94.7 69 65.2
MD07G1311100 Malus domestica HOM05D000653 ORTHO05D003117 5.0e-18 94.0 69 65.2
Prupe.2G330100 Prunus persica HOM05D000653 ORTHO05D003117 6.5e-18 93.6 68 67.6
Sc19g0006500 Simmondsia chinensis HOM05D000653 ORTHO05D003117 6.5e-18 93.6 69 72.5
MELO3C024748.2 Cucumis melo HOM05D000653 ORTHO05D003117 8.5e-18 93.2 69 68.1
CsaV3_2G035940 Cucumis sativus L. HOM05D000653 ORTHO05D003117 8.5e-18 93.2 69 68.1
TWI60G1259 Tripterygium wilfordii HOM05D000653 ORTHO05D003117 1.1e-17 92.8 66 69.7
MSTRG.16995 Avicennia marina HOM05D000653 ORTHO05D003117 1.9e-17 92.0 66 69.7
Ciclev10031558m.g Citrus clementina HOM05D000653 ORTHO05D003117 2.5e-17 91.7 68 69.1
CAN.G732.32 Capsicum annuum HOM05D000653 ORTHO05D003117 5.5e-17 90.5 69 65.2
COL.COLO4_12969 Corchorus olitorius HOM05D000653 ORTHO05D003117 5.5e-17 90.5 66 71.2
ECA232G4106 Erigeron canadensis HOM05D000653 ORTHO05D003117 9.4e-17 89.7 71 66.2
Sopen03g028080 Solanum pennellii HOM05D000653 ORTHO05D003117 9.4e-17 89.7 69 63.8
PGSC0003DMG400026476 Solanum tuberosum HOM05D000653 ORTHO05D003117 1.2e-16 89.4 69 63.8
CiPaw.06G036800 Carya illinoinensis HOM05D000653 ORTHO05D003117 1.6e-16 89.0 68 63.2
EL10Ac3g06809 Beta vulgaris HOM05D000653 ORTHO05D003117 2.1e-16 88.6 70 61.4
Cc09_g04210 Coffea canephora HOM05D000653 ORTHO05D003117 2.1e-16 88.6 69 62.3
Solyc03g097310.3 Solanum lycopersicum HOM05D000653 ORTHO05D003117 2.1e-16 88.6 69 63.8
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 2.7e-16 88.2 70 62.9
AUR62032676 Chenopodium quinoa HOM05D000653 ORTHO05D003117 2.7e-16 88.2 62 72.6
ClCG02G007810 Citrullus lanatus HOM05D000653 ORTHO05D003117 3.6e-16 87.8 69 65.2
Lsat_1_v5_gn_9_46060 Lactuca sativa HOM05D000653 ORTHO05D003117 3.6e-16 87.8 69 62.3
RcHm_v2.0_Chr1g0384681 Rosa chinensis HOM05D000653 ORTHO05D003117 3.6e-16 87.8 74 62.2
Migut.B01202 Erythranthe guttata HOM05D000653 ORTHO05D003117 4.7e-16 87.4 69 59.4
Gohir.A13G087100 Gossypium hirsutum HOM05D000653 ORTHO05D003117 4.7e-16 87.4 59 78.0
Gorai.001G250700 Gossypium raimondii HOM05D000653 ORTHO05D003117 4.7e-16 87.4 59 78.0
Potri.019G043000 Populus trichocarpa HOM05D000653 ORTHO05D003117 4.7e-16 87.4 69 62.3
AUR62032071 Chenopodium quinoa HOM05D000653 ORTHO05D003117 8.0e-16 86.7 62 69.4
SGA_v2.0_scaffold119G32798 Striga asiatica HOM05D000653 ORTHO05D003117 8.0e-16 86.7 69 60.9
DCAR_009030 Daucus carota HOM05D000653 ORTHO05D003117 1.4e-15 85.9 69 63.8
Gohir.D13G098800 Gossypium hirsutum HOM05D000653 ORTHO05D003117 2.3e-15 85.1 59 76.3
unitig_26.g8822 Utricularia gibba HOM05D000653 ORTHO05D003117 2.3e-15 85.1 70 61.4
CiPaw.05G211200 Carya illinoinensis HOM05D000653 ORTHO05D003117 3.0e-15 84.7 68 64.7
Manes.08G159600 Manihot esculenta HOM05D000653 ORTHO05D003117 3.9e-15 84.3 69 60.9
Potri.013G076300 Populus trichocarpa HOM05D000653 ORTHO05D003117 5.2e-15 84.0 68 63.2
Nn3g19178 Nelumbo nucifera HOM05D000653 ORTHO05D003117 6.7e-15 83.6 66 63.6
FAN01G1439 Fragaria x ananassa HOM05D000653 ORTHO05D003117 8.8e-15 83.2 58 69.0
Sabra19G0053600 Salix brachista HOM05D000653 ORTHO05D003117 8.8e-15 83.2 70 60.0
Sed0001441 Sechium edule HOM05D000653 ORTHO05D003117 8.8e-15 83.2 64 68.8
Atru.chr12.1819 Acer truncatum HOM05D000653 ORTHO05D003117 1.1e-14 82.8 69 59.4
Eucgr.K01338 Eucalyptus grandis HOM05D000653 ORTHO05D003117 1.1e-14 82.8 68 63.2
FvH4_7g34292 Fragaria vesca HOM05D000653 ORTHO05D003117 1.5e-14 82.4 58 69.0
FAN10G3376 Fragaria x ananassa HOM05D000653 ORTHO05D003117 1.5e-14 82.4 58 69.0
PGR119G2231 Punica granatum HOM05D000653 ORTHO05D003117 1.5e-14 82.4 72 62.5
Sed0008290 Sechium edule HOM05D000653 ORTHO05D003117 2.0e-14 82.0 68 66.2
Aa31LG2G2130 Aethionema arabicum HOM05D000653 ORTHO05D003117 2.6e-14 81.6 68 60.3
Aqoxy3G02003 Aquilegia oxysepala HOM05D000653 ORTHO05D003117 5.7e-14 80.5 64 65.6
Lj3A883G44 Lonicera japonica HOM05D000653 ORTHO05D003117 5.7e-14 80.5 58 70.7
Nn1g09259 Nelumbo nucifera HOM05D000653 ORTHO05D003117 5.7e-14 80.5 66 60.6
Hund24841 Selenicereus undatus HOM05D000653 ORTHO05D003117 5.7e-14 80.5 69 60.9
PSO541G4933 Papaver somniferum HOM05D000653 ORTHO05D003117 7.4e-14 80.1 68 61.8
PSO675G2725 Papaver somniferum HOM05D000653 ORTHO05D003117 7.4e-14 80.1 76 60.5
CSS0025003 Camellia sinensis var. sinensis HOM05D000653 ORTHO05D003117 3.7e-13 77.8 57 70.2
Sabra13G0065500 Salix brachista HOM05D000653 ORTHO05D003117 3.7e-13 77.8 69 58.0
THA.LOC104805721 Tarenaya hassleriana HOM05D000653 ORTHO05D003117 6.3e-13 77.0 68 60.3
AT1G64890 Arabidopsis thaliana HOM05D000653 ORTHO05D003117 9.1e-12 73.2 68 54.4
Carub.0002s0997 Capsella rubella HOM05D000653 ORTHO05D003117 9.1e-12 73.2 68 54.4
THA.LOC104805723 Tarenaya hassleriana HOM05D000653 ORTHO05D003117 9.1e-12 73.2 64 59.4
Cpa.g.sc43.151 Carica papaya HOM05D000653 ORTHO05D003117 1.2e-11 72.8 55 67.3
CDE06G2363 Ceratophyllum demersum HOM05D000653 ORTHO05D003117 1.6e-11 72.4 70 54.3
AL2G19380 Arabidopsis lyrata HOM05D000653 ORTHO05D003117 2.0e-11 72.0 68 54.4
CANSAT21G1548 Cannabis sativa HOM05D000653 ORTHO05D003117 2.0e-11 72.0 59 61.0
Os05g0389400 Oryza sativa ssp. japonica HOM05D000653 ORTHO05D003117 2.0e-11 72.0 70 55.7
CDE06G1692 Ceratophyllum demersum HOM05D000653 ORTHO05D003117 4.5e-11 70.9 70 52.9
Thhalv10018559m.g Eutrema salsugineum HOM05D000653 ORTHO05D003117 4.5e-11 70.9 68 54.4
ATR0568G121 Amborella trichopoda HOM05D000653 ORTHO05D003117 5.9e-11 70.5 65 53.8
CARHR034490 Cardamine hirsuta HOM05D000653 ORTHO05D003117 5.9e-11 70.5 66 54.5
HanXRQChr15g0492751 Helianthus annuus HOM05D000653 ORTHO05D003117 5.9e-11 70.5 59 62.7
Sp5g31250 Schrenkiella parvula HOM05D000653 ORTHO05D003117 1.0e-10 69.7 68 51.5
Zm00001eb287130 Zea mays HOM05D000653 ORTHO05D003117 2.2e-10 68.6 70 55.7
A07p41690 Brassica napus HOM05D000653 ORTHO05D003117 8.5e-10 66.6 73 49.3
Pp3c18_11000 Physcomitrium patens HOM05D000653 ORTHO05D003117 8.5e-10 66.6 57 57.9
CDE02G4397 Ceratophyllum demersum HOM05D000653 ORTHO05D003117 1.5e-09 65.9 70 47.1
CDE11G1043 Ceratophyllum demersum HOM05D000653 ORTHO05D003117 1.5e-09 65.9 70 45.7
BcaC08g47106 Brassica carinata HOM05D000653 ORTHO05D003117 2.5e-09 65.1 69 49.3
Pp3c1_14900 Physcomitrium patens HOM05D000653 ORTHO05D003117 2.5e-09 65.1 62 54.8
BcaC08g47289 Brassica carinata HOM05D000653 ORTHO05D003117 5.5e-09 63.9 57 54.4
BcaNung05113 Brassica carinata HOM05D000653 ORTHO05D003117 5.5e-09 63.9 57 54.4
BcaNung05114 Brassica carinata HOM05D000983 ORTHO05D015467 5.5e-09 63.9 57 54.4
C06p50070 Brassica napus HOM05D000653 ORTHO05D003117 5.5e-09 63.9 57 54.4
BolC6t40046H Brassica oleracea HOM05D000653 ORTHO05D003117 5.5e-09 63.9 57 54.4
BraA07t31698Z Brassica rapa HOM05D000653 ORTHO05D003117 5.5e-09 63.9 57 54.4
unitig_750.g28445 Utricularia gibba HOM05D000321 ORTHO05D000204 7.2e-09 63.5 56 67.9
Nitab4.5_0003474g0020 Nicotiana tabacum HOM05D000653 ORTHO05D003117 2.1e-08 62.0 68 45.6
Pp3c21_8500 Physcomitrium patens HOM05D000653 ORTHO05D003117 4.7e-08 60.8 62 50.0
arahy.Tifrunner.gnm1.ann1.027AMB Arachis hypogaea HOM05D000653 ORTHO05D003117 2.3e-07 58.5 57 50.9
arahy.Tifrunner.gnm1.ann1.QG1AXF Arachis hypogaea HOM05D000653 ORTHO05D003117 2.3e-07 58.5 57 50.9
unitig_32.g11690 Utricularia gibba HOM05D000653 ORTHO05D003117 2.3e-07 58.5 58 50.0
Aqoxy2G03757 Aquilegia oxysepala HOM05D000653 ORTHO05D003117 3.0e-07 58.2 65 44.6
Eucgr.H02894 Eucalyptus grandis HOM05D000653 ORTHO05D003117 3.0e-07 58.2 67 44.8
SalBow2G2637 Salvia bowleyana HOM05D000653 ORTHO05D003117 3.0e-07 58.2 57 49.1
Nitab4.5_0002937g0020 Nicotiana tabacum HOM05D000653 ORTHO05D003117 4.0e-07 57.8 68 44.1
SMO351G0282 Selaginella moellendorffii HOM05D000653 ORTHO05D003117 6.7e-07 57.0 58 51.7
MSTRG.9845 Avicennia marina HOM05D000653 ORTHO05D003117 8.8e-07 56.6 58 48.3
Lsat_1_v5_gn_1_76041 Lactuca sativa HOM05D000653 ORTHO05D003117 8.8e-07 56.6 68 42.6
Cpa.g.sc59.25 Carica papaya HOM05D000653 ORTHO05D003117 1.2e-06 56.2 67 41.8
CiPaw.01G176000 Carya illinoinensis HOM05D000653 ORTHO05D003117 1.2e-06 56.2 69 42.0
Psat5g227560 Pisum sativum HOM05D000653 ORTHO05D003117 1.2e-06 56.2 57 50.9
SHI15011 Sapria himalayana HOM05D000653 ORTHO05D003117 1.5e-06 55.8 58 51.7
Haze_11489 Corylus avellana HOM05D000653 ORTHO05D003117 2.0e-06 55.5 67 41.8
Nn3g19815 Nelumbo nucifera HOM05D000653 ORTHO05D003117 2.0e-06 55.5 67 44.8
Peaxi162Scf00125g01319 Petunia axillaris HOM05D000653 ORTHO05D003117 2.0e-06 55.5 58 50.0
Cfa014808 Carpinus fangiana HOM05D000653 ORTHO05D003117 2.6e-06 55.1 67 41.8
Ca_27071_v3 Cicer arietinum L. HOM05D000653 ORTHO05D003117 2.6e-06 55.1 67 41.8
HanXRQChr01g0022491 Helianthus annuus HOM05D000653 ORTHO05D003117 2.6e-06 55.1 68 42.6
Medtr3g008470 Medicago truncatula HOM05D000653 ORTHO05D003117 2.6e-06 55.1 67 43.3
Pp3c1_36490 Physcomitrium patens HOM05D000653 ORTHO05D008581 2.6e-06 55.1 59 49.2
Lalb_Chr18g0048881 Lupinus albus HOM05D000653 ORTHO05D003117 3.3e-06 54.7 57 50.9
PGR031G3908 Punica granatum HOM05D000653 ORTHO05D003117 4.4e-06 54.3 68 44.1
PGR118G0001 Punica granatum HOM05D000653 ORTHO05D003117 4.4e-06 54.3 68 44.1
SEGI_16384 Sequoiadendron giganteum HOM05D000653 ORTHO05D003117 4.4e-06 54.3 68 39.7
AUR62035365 Chenopodium quinoa HOM05D000653 ORTHO05D003117 7.5e-06 53.5 67 40.3
FvH4_4g05110 Fragaria vesca HOM05D000653 ORTHO05D003117 7.5e-06 53.5 69 43.5
FAN12G2590 Fragaria x ananassa HOM05D000653 ORTHO05D003117 7.5e-06 53.5 69 43.5
FAN22G1694 Fragaria x ananassa HOM05D000653 ORTHO05D003117 7.5e-06 53.5 69 43.5
Oeu048717.1 Olea europaea HOM05D000653 ORTHO05D003117 7.5e-06 53.5 66 42.4
TPR.G27671 Trifolium pratense HOM05D000653 ORTHO05D003117 7.5e-06 53.5 59 45.8
TWI09G0029 Tripterygium wilfordii HOM05D000653 ORTHO05D003117 7.5e-06 53.5 69 42.0
VMungo1080G1408 Vigna mungo HOM05D000653 ORTHO05D003117 7.5e-06 53.5 57 45.6
HPP92_008469 Vanilla planifolia HOM05D000653 ORTHO05D003117 9.7e-06 53.1 57 49.1
HPP92_027288 Vanilla planifolia HOM05D000653 ORTHO05D003117 9.7e-06 53.1 57 49.1


User provided reference genes

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