Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 9.2e-273 943.0 479 100.0
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.0e-247 859.8 484 91.9
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 6.2e-237 823.9 482 88.6
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 3.0e-231 805.1 480 86.0
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 2.5e-230 802.0 480 86.5
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.7e-226 789.3 480 84.8
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 2.2e-226 788.9 480 85.6
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 2.9e-226 788.5 473 85.4
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.1e-224 782.3 459 86.7
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 2.6e-219 765.4 511 78.9
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 8.5e-218 760.4 489 82.0
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 8.2e-213 743.8 436 84.9
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.1e-212 743.4 445 83.1
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 2.4e-212 742.3 435 85.5
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 3.1e-212 741.9 435 85.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 4.1e-212 741.5 436 84.6
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.2e-211 740.0 446 83.9
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 3.4e-211 738.4 434 85.0
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 4.5e-211 738.0 434 85.5
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 5.9e-211 737.6 457 80.5
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 5.9e-211 737.6 487 78.6
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.7e-211 737.3 442 83.5
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 7.7e-211 737.3 435 84.4
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 7.7e-211 737.3 475 79.2
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.0e-210 736.9 434 85.0
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.3e-210 736.5 455 81.3
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 5.0e-210 734.6 433 84.5
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.1e-209 733.4 434 84.8
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 1.9e-209 732.6 435 83.4
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.9e-209 732.6 435 83.7
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 2.5e-209 732.3 435 83.0
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 4.2e-209 731.5 446 82.3
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 7.2e-209 730.7 433 84.1
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 9.4e-209 730.3 460 81.5
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 9.4e-209 730.3 435 85.1
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.2e-208 729.9 459 80.4
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.6e-208 729.6 435 83.9
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.6e-208 729.6 434 84.1
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 2.1e-208 729.2 436 82.8
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.1e-208 729.2 477 78.8
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.7e-208 728.8 435 83.9
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 4.7e-208 728.0 434 83.4
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 6.1e-208 727.6 456 81.1
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 6.1e-208 727.6 456 80.9
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 6.1e-208 727.6 449 81.1
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.0e-207 726.9 457 78.6
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.8e-207 726.1 456 80.9
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 3.0e-207 725.3 473 77.4
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 5.1e-207 724.5 442 82.1
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.1e-206 723.4 471 77.3
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.1e-206 723.4 435 82.3
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.5e-206 723.0 435 83.7
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 1.5e-206 723.0 488 76.2
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 2.0e-206 722.6 487 76.4
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 2.6e-206 722.2 463 80.3
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 2.6e-206 722.2 456 80.9
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.6e-206 722.2 477 78.0
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 3.3e-206 721.8 456 79.8
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 4.4e-206 721.5 435 81.8
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 4.4e-206 721.5 486 75.9
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 7.4e-206 720.7 435 82.3
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 9.7e-206 720.3 450 80.7
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.7e-205 719.5 435 83.0
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 1.7e-205 719.5 436 82.8
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 8.2e-205 717.2 436 81.2
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.1e-204 716.8 436 81.2
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 1.8e-204 716.1 447 81.0
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.4e-204 715.7 443 81.5
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.4e-204 715.7 434 83.6
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 4.1e-204 714.9 475 75.6
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 4.1e-204 714.9 475 75.4
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 5.3e-204 714.5 435 82.1
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 9.1e-204 713.8 485 75.7
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 9.1e-204 713.8 486 75.1
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 1.5e-203 713.0 472 76.3
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 1.5e-203 713.0 464 78.0
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 1.5e-203 713.0 458 78.2
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 2.0e-203 712.6 436 80.3
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 2.0e-203 712.6 432 81.7
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 2.0e-203 712.6 459 78.4
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 4.5e-203 711.4 460 78.5
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 4.5e-203 711.4 459 78.0
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 4.5e-203 711.4 435 82.1
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.0e-202 710.3 436 80.7
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 2.2e-202 709.1 433 80.8
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 2.2e-202 709.1 433 80.8
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 2.2e-202 709.1 436 80.0
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 2.9e-202 708.8 431 82.4
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 3.8e-202 708.4 435 80.2
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 3.8e-202 708.4 437 80.1
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 5.0e-202 708.0 442 79.6
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 5.0e-202 708.0 442 79.6
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 5.0e-202 708.0 435 82.3
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 6.5e-202 707.6 436 80.3
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 6.5e-202 707.6 436 80.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.5e-202 707.6 435 82.5
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 1.1e-201 706.8 431 79.6
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 2.5e-201 705.7 431 81.9
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 2.5e-201 705.7 442 79.4
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 3.2e-201 705.3 442 79.4
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 4.2e-201 704.9 435 79.5
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.2e-201 704.9 464 78.0
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.6e-200 703.0 436 79.8
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 2.7e-200 702.2 441 79.4
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 3.6e-200 701.8 461 76.8
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.4e-199 699.9 446 80.0
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.8e-196 689.5 437 77.8
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.3e-196 688.0 434 80.9
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.2e-195 686.8 462 76.6
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 3.8e-194 681.8 462 76.4
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 3.8e-194 681.8 445 79.3
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.1e-193 680.2 424 80.2
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 3.2e-193 678.7 458 74.7
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.5e-193 677.9 434 80.0
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 8.8e-191 670.6 409 81.7
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 9.8e-190 667.2 386 86.8
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.6e-184 649.8 435 73.6
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 1.8e-180 636.3 436 74.5
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 3.5e-179 632.1 465 69.5
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.3e-178 629.4 432 73.1
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 2.8e-176 622.5 434 71.9
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 3.5e-171 605.5 427 72.1
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 4.0e-167 592.0 426 70.2
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 4.4e-166 588.6 430 69.8
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 8.3e-165 584.3 426 69.2
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.2e-158 563.9 346 80.1
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.6e-158 562.8 427 68.4
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 3.9e-154 548.9 471 64.5
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.3e-146 523.1 318 82.4
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.7e-141 506.9 315 80.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 8.4e-141 504.6 301 86.7
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 2.9e-117 426.4 289 74.7
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 2.7e-115 419.9 331 68.3
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.1e-114 415.6 417 53.2
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 5.1e-114 415.6 280 76.8
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.1e-113 414.5 257 80.9
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 1.6e-112 410.6 233 88.0
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.4e-92 344.4 401 53.1
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 2.0e-86 323.9 180 87.8
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 2.2e-85 320.5 178 88.8
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 2.9e-85 320.1 201 79.1
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 4.0e-82 309.7 227 70.5
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.2e-70 271.6 181 74.6
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 1.9e-68 264.2 229 62.9
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 2.0e-65 254.2 217 63.6
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 2.0e-65 254.2 422 41.0
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 9.8e-65 251.9 220 63.2
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 6.3e-64 249.2 217 63.1
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.8e-63 247.7 295 46.1
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 1.2e-62 245.0 126 96.8
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 1.6e-62 244.6 242 57.9
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 8.0e-59 232.3 215 60.0
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.4e-49 200.3 116 83.6
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 8.9e-42 175.6 188 55.3
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.1e-39 166.8 92 88.0
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 2.1e-38 164.5 87 92.0
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.5e-28 131.0 133 48.9
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 2.1e-27 127.9 154 47.4
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 6.0e-22 109.8 125 51.2
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.0e-21 109.0 135 49.6
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.3e-21 108.6 209 38.8
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 6.6e-21 106.3 67 79.1
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.1e-19 101.3 59 86.4
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 3.6e-19 100.5 72 65.3
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 1.3e-16 92.0 74 62.2
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.4e-15 88.6 57 78.9
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.4e-15 87.8 66 66.7
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 6.0e-14 83.2 48 89.6
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 5.1e-13 80.1 69 68.1
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 5.1e-13 80.1 45 86.7
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 8.1e-11 72.8 37 97.3
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 8.1e-11 72.8 68 61.8
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 6.9e-10 69.7 46 76.1
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 5.8e-09 66.6 49 65.3
arahy.Tifrunner.gnm1.ann1.G95B1D Arachis hypogaea HOM05D004109 ORTHO05D084004 1.3e-08 65.5 38 76.3
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 2.4e-07 61.2 34 82.4
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 2.7e-06 57.8 51 62.7
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 6.0e-06 56.6 31 77.4


User provided reference genes

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