Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g029020 Medicago truncatula HOM05D003075 ORTHO05D003430 6.1e-38 160.2 76 100.0
Ca_17564_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 5.4e-10 67.4 39 82.1
Lj3g0026412 Lotus japonicus HOM05D003075 ORTHO05D003430 7.1e-10 67.0 39 82.1
Lalb_Chr12g0208211 Lupinus albus HOM05D003075 ORTHO05D003430 7.1e-10 67.0 39 79.5
Medtr4g084670 Medicago truncatula HOM05D003075 ORTHO05D003430 7.1e-10 67.0 34 91.2
Ca_19902_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 9.2e-10 66.6 39 79.5
Dinv43697 Davidia involucrata HOM05D003075 ORTHO05D003430 1.2e-09 66.2 40 77.5
Medtr4g023500 Medicago truncatula HOM05D003075 ORTHO05D003430 1.2e-09 66.2 34 88.2
Psat7g231560 Pisum sativum HOM05D003075 ORTHO05D003430 2.7e-09 65.1 34 85.3
arahy.Tifrunner.gnm1.ann1.1FZS4Y Arachis hypogaea HOM05D003075 ORTHO05D003430 3.5e-09 64.7 39 76.9
arahy.Tifrunner.gnm1.ann1.7U8F1S Arachis hypogaea HOM05D003075 ORTHO05D003430 3.5e-09 64.7 39 76.9
arahy.Tifrunner.gnm1.ann1.TA4JIU Arachis hypogaea HOM05D003075 ORTHO05D003430 3.5e-09 64.7 39 76.9
CsaV3_3G009750 Cucumis sativus L. HOM05D003075 ORTHO05D003430 3.5e-09 64.7 39 79.5
GSVIVG01027678001 Vitis vinifera HOM05D003075 ORTHO05D003430 3.5e-09 64.7 39 79.5
arahy.Tifrunner.gnm1.ann1.G5NZ7A Arachis hypogaea HOM05D003075 ORTHO05D003430 4.6e-09 64.3 39 74.4
Cpa.g.sc11.49 Carica papaya HOM05D003075 ORTHO05D003430 4.6e-09 64.3 39 76.9
Glyma.17G199600 Glycine max HOM05D003075 ORTHO05D003430 4.6e-09 64.3 39 79.5
QL08p052672 Quercus lobata HOM05D003075 ORTHO05D003430 4.6e-09 64.3 39 76.9
GSVIVG01027679001 Vitis vinifera HOM05D003075 ORTHO05D003430 4.6e-09 64.3 39 76.9
Haze_16798 Corylus avellana HOM05D003075 ORTHO05D003430 6.0e-09 63.9 39 74.4
TPR.G9841 Trifolium pratense HOM05D003075 ORTHO05D003430 6.0e-09 63.9 34 85.3
MELO3C006196.2 Cucumis melo HOM05D003075 ORTHO05D003430 7.8e-09 63.5 39 76.9
Glyma.17G254400 Glycine max HOM05D003075 ORTHO05D003430 7.8e-09 63.5 39 76.9
PSO135G0225 Papaver somniferum HOM05D003075 ORTHO05D003430 7.8e-09 63.5 34 82.4
CSS0007073 Camellia sinensis var. sinensis HOM05D003075 ORTHO05D003430 1.0e-08 63.2 39 74.4
Duzib138G0067 Durio zibethinus HOM05D003075 ORTHO05D003430 1.0e-08 63.2 39 74.4
Duzib138G1594 Durio zibethinus HOM05D003075 ORTHO05D003430 1.0e-08 63.2 39 74.4
Gohir.A08G135300 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.0e-08 63.2 39 74.4
Gohir.D08G156200 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.0e-08 63.2 39 74.4
Gorai.004G162500 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.0e-08 63.2 39 74.4
Nn4g26370 Nelumbo nucifera HOM05D003075 ORTHO05D003430 1.0e-08 63.2 41 68.3
CANSAT35G1223 Cannabis sativa HOM05D003075 ORTHO05D003430 1.3e-08 62.8 39 69.2
Ca_19890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 1.3e-08 62.8 34 85.3
Ca_29890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 1.3e-08 62.8 34 85.3
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.3e-08 62.8 39 74.4
MD00G1100000 Malus domestica HOM05D003075 ORTHO05D003430 1.3e-08 62.8 34 82.4
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.3e-08 62.8 34 76.5
VMungo0331G0754 Vigna mungo HOM05D003075 ORTHO05D003430 1.3e-08 62.8 39 71.8
arahy.Tifrunner.gnm1.ann1.2E18SB Arachis hypogaea HOM05D003075 ORTHO05D003430 1.7e-08 62.4 39 71.8
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.7e-08 62.4 39 76.9
Nitab4.5_0004552g0030 Nicotiana tabacum HOM05D003075 ORTHO05D003430 1.7e-08 62.4 39 69.2
Sed0011315 Sechium edule HOM05D003075 ORTHO05D003430 1.7e-08 62.4 39 74.4
SGA_v2.0_scaffold43G16486 Striga asiatica HOM05D003075 ORTHO05D003430 1.7e-08 62.4 39 71.8
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 2.3e-08 62.0 39 71.8
Lj9A568T64 Lonicera japonica HOM05D003075 ORTHO05D003430 2.3e-08 62.0 39 71.8
Cfa001744 Carpinus fangiana HOM05D003075 ORTHO05D003430 3.0e-08 61.6 39 69.2
Manes.01G266500 Manihot esculenta HOM05D003075 ORTHO05D003430 3.0e-08 61.6 39 71.8
Nn1g01143 Nelumbo nucifera HOM05D003075 ORTHO05D003430 3.0e-08 61.6 39 66.7
Sc23g0003640 Simmondsia chinensis HOM05D003075 ORTHO05D003430 3.0e-08 61.6 39 74.4
arahy.Tifrunner.gnm1.ann1.LQNG80 Arachis hypogaea HOM05D003075 ORTHO05D003430 3.9e-08 61.2 39 74.4
CAN.G388.29 Capsicum annuum HOM05D003075 ORTHO05D003430 3.9e-08 61.2 39 66.7
Nitab4.5_0000457g0150 Nicotiana tabacum HOM05D003075 ORTHO05D003430 3.9e-08 61.2 39 66.7
Solyc01g091210.3 Solanum lycopersicum HOM05D003075 ORTHO05D003430 3.9e-08 61.2 39 66.7
Sopen01g036960 Solanum pennellii HOM05D003075 ORTHO05D003430 3.9e-08 61.2 39 66.7
PGSC0003DMG402025960 Solanum tuberosum HOM05D003075 ORTHO05D003430 3.9e-08 61.2 39 66.7
Thecc.01G378100 Theobroma cacao HOM05D003075 ORTHO05D003430 3.9e-08 61.2 39 71.8
TAR375G0194 Trochodendron aralioides HOM05D003075 ORTHO05D003430 3.9e-08 61.2 39 69.2
vmacro13410 Vaccinium macrocarpon HOM05D003075 ORTHO05D003430 3.9e-08 61.2 44 65.9
Migut.N01626 Erythranthe guttata HOM05D003075 ORTHO05D003430 6.6e-08 60.5 34 73.5
Peaxi162Scf00013g03226 Petunia axillaris HOM05D003075 ORTHO05D003430 6.6e-08 60.5 39 69.2
Phvul.010G084500 Phaseolus vulgaris HOM05D003075 ORTHO05D003430 6.6e-08 60.5 39 69.2
Rhsim07G0028400 Rhododendron simsii HOM05D003075 ORTHO05D003430 6.6e-08 60.5 43 65.1
Atru.chr5.294 Acer truncatum HOM05D003075 ORTHO05D003430 8.7e-08 60.1 39 69.2
Aqoxy5G02670 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 8.7e-08 60.1 34 76.5
HanXRQChr04g0122761 Helianthus annuus HOM05D003075 ORTHO05D003430 1.1e-07 59.7 39 66.7
PSO478G3315 Papaver somniferum HOM05D003075 ORTHO05D003430 1.1e-07 59.7 34 76.5
Sabra02G0114300 Salix brachista HOM05D003075 ORTHO05D003430 1.1e-07 59.7 39 64.1
MD07G1120400 Malus domestica HOM05D003075 ORTHO05D003430 1.5e-07 59.3 34 76.5
Prupe.2G143900 Prunus persica HOM05D003075 ORTHO05D003430 1.5e-07 59.3 39 69.2
Gohir.D05G389001 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.9e-07 58.9 39 69.2
Gorai.009G455600 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.9e-07 58.9 39 69.2
Lj7C530G5 Lonicera japonica HOM05D003075 ORTHO05D003430 1.9e-07 58.9 38 68.4
ECA236G1357 Erigeron canadensis HOM05D003075 ORTHO05D003430 2.5e-07 58.5 39 66.7
Lsat_1_v5_gn_7_9801 Lactuca sativa HOM05D003075 ORTHO05D003430 2.5e-07 58.5 34 73.5
Potri.002G117000 Populus trichocarpa HOM05D003075 ORTHO05D003430 2.5e-07 58.5 39 66.7
Potri.013G094500 Populus trichocarpa HOM05D003075 ORTHO05D003430 2.5e-07 58.5 39 66.7
PGR042G3567 Punica granatum HOM05D003075 ORTHO05D003430 2.5e-07 58.5 39 64.1
TWI23G0023 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 2.5e-07 58.5 39 64.1
CiPaw.09G176300 Carya illinoinensis HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 71.8
FvH4_7g11590 Fragaria vesca HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 66.7
FAN03G3200 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 66.7
FAN06G2161 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 66.7
FAN06G4578 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 66.7
FAN10G0718 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 66.7
FAN10G3608 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 66.7
Gohir.D01G222050 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 69.2
Gorai.002G268800 Gossypium raimondii HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 69.2
Hma1.2p1_0446F.1_g154650 Hydrangea macrophylla HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 64.1
SalBow7G2967 Salvia bowleyana HOM05D003075 ORTHO05D003430 3.3e-07 58.2 39 66.7
SalBow5G2038 Salvia bowleyana HOM05D003075 ORTHO05D003430 4.3e-07 57.8 39 66.7
Ciclev10009039m.g Citrus clementina HOM05D003075 ORTHO05D003430 5.6e-07 57.4 39 69.2
RcHm_v2.0_Chr1g0350011 Rosa chinensis HOM05D003075 ORTHO05D003430 5.6e-07 57.4 39 64.1
Gorai.007G000400 Gossypium raimondii HOM05D003075 ORTHO05D003430 7.3e-07 57.0 39 66.7
Gorai.008G298600 Gossypium raimondii HOM05D003075 ORTHO05D003430 7.3e-07 57.0 39 66.7
THA.LOC104819580 Tarenaya hassleriana HOM05D003075 ORTHO05D003430 7.3e-07 57.0 34 70.6
Aqoxy7G00659 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 9.6e-07 56.6 34 70.6
FAN01G2913 Fragaria x ananassa HOM05D003075 ORTHO05D003430 9.6e-07 56.6 39 64.1
Hund17026 Selenicereus undatus HOM05D003075 ORTHO05D003430 9.6e-07 56.6 39 64.1
SGA_v2.0_scaffold11G05572 Striga asiatica HOM05D003075 ORTHO05D003430 9.6e-07 56.6 34 70.6
Cc02_g24000 Coffea canephora HOM05D003075 ORTHO05D003430 1.2e-06 56.2 39 59.0
MBI12_g31643_MAGBIO Magnolia biondii HOM05D003075 ORTHO05D003430 1.2e-06 56.2 39 66.7
Oeu003479.1 Olea europaea HOM05D003075 ORTHO05D003430 1.2e-06 56.2 34 70.6
MSTRG.4898 Avicennia marina HOM05D003075 ORTHO05D003430 1.6e-06 55.8 32 78.1
ATR0733G147 Amborella trichopoda HOM05D003075 ORTHO05D003430 2.1e-06 55.5 39 61.5
Os06g0134050 Oryza sativa ssp. japonica HOM05D003075 ORTHO05D003430 2.8e-06 55.1 39 61.5
Eucgr.D02463 Eucalyptus grandis HOM05D003075 ORTHO05D003430 3.6e-06 54.7 39 61.5
PSO384G4045 Papaver somniferum HOM05D003075 ORTHO05D003430 3.6e-06 54.7 34 70.6
Zm00001eb377990 Zea mays HOM05D003075 ORTHO05D003430 3.6e-06 54.7 34 64.7
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.7e-06 54.3 39 61.5
Oeu064471.1 Olea europaea HOM05D003075 ORTHO05D003430 4.7e-06 54.3 34 67.6
Lsat_1_v5_gn_8_86100 Lactuca sativa HOM05D003075 ORTHO05D003430 6.2e-06 53.9 39 64.1
RcHm_v2.0_Chr7g0199321 Rosa chinensis HOM05D003075 ORTHO05D003430 6.2e-06 53.9 39 61.5
TWI14G0663 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 6.2e-06 53.9 39 61.5
Aqoxy5G02557 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 8.1e-06 53.5 34 70.6
AT2G45330 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 8.1e-06 53.5 34 70.6
AUR62004205 Chenopodium quinoa HOM05D003075 ORTHO05D003430 8.1e-06 53.5 39 64.1
AUR62013643 Chenopodium quinoa HOM05D003075 ORTHO05D003430 8.1e-06 53.5 39 64.1
AUR62018381 Chenopodium quinoa HOM05D003075 ORTHO05D003430 8.1e-06 53.5 39 64.1


User provided reference genes

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