Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g026860 Medicago truncatula HOM05D004239 ORTHO05D016646 9.8e-64 246.5 114 100.0
Manes.18G001200 Manihot esculenta HOM05D000084 ORTHO05D000639 8.7e-12 73.9 53 69.8
Psat6g124080 Pisum sativum HOM05D000084 ORTHO05D000639 3.3e-11 72.0 53 69.8
Lsat_1_v5_gn_8_26000 Lactuca sativa HOM05D000084 ORTHO05D000639 5.6e-11 71.2 53 67.9
MSTRG.24901 Avicennia marina HOM05D000084 ORTHO05D000639 9.6e-11 70.5 70 55.7
Cfa014148 Carpinus fangiana HOM05D000084 ORTHO05D000639 9.6e-11 70.5 53 64.2
CANSAT54G1044 Cannabis sativa HOM05D000084 ORTHO05D000639 1.3e-10 70.1 53 62.3
CiPaw.07G132000 Carya illinoinensis HOM05D000084 ORTHO05D000639 1.3e-10 70.1 53 64.2
ECA233G4563 Erigeron canadensis HOM05D000084 ORTHO05D000639 1.3e-10 70.1 53 66.0
Dinv23335 Davidia involucrata HOM05D000084 ORTHO05D000639 1.6e-10 69.7 53 66.0
Gohir.A01G101600 Gossypium hirsutum HOM05D000084 ORTHO05D000639 1.6e-10 69.7 53 64.2
Gohir.D01G086700 Gossypium hirsutum HOM05D000084 ORTHO05D000639 1.6e-10 69.7 53 64.2
Gorai.002G112300 Gossypium raimondii HOM05D000084 ORTHO05D000639 1.6e-10 69.7 53 64.2
Hma1.2p1_0489F.1_g164170 Hydrangea macrophylla HOM05D000084 ORTHO05D000639 1.6e-10 69.7 53 66.0
Manes.05G129300 Manihot esculenta HOM05D000084 ORTHO05D000639 2.1e-10 69.3 53 64.2
Potri.005G257500 Populus trichocarpa HOM05D000084 ORTHO05D000639 2.1e-10 69.3 53 66.0
SalBow7G1645 Salvia bowleyana HOM05D000084 ORTHO05D000639 2.1e-10 69.3 53 62.3
Dinv05505 Davidia involucrata HOM05D000084 ORTHO05D000639 2.8e-10 68.9 53 64.2
SGA_v2.0_scaffold26G11250 Striga asiatica HOM05D000084 ORTHO05D000639 2.8e-10 68.9 53 62.3
CSS0012344 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D000639 3.6e-10 68.6 53 64.2
ClCG11G019050 Citrullus lanatus HOM05D000084 ORTHO05D000639 3.6e-10 68.6 53 64.2
Oeu032528.1 Olea europaea HOM05D000084 ORTHO05D000639 3.6e-10 68.6 53 62.3
BcaC08g47233 Brassica carinata HOM05D000084 ORTHO05D000639 4.8e-10 68.2 57 59.6
C06p50800 Brassica napus HOM05D000084 ORTHO05D000639 4.8e-10 68.2 57 59.6
DCAR_009858 Daucus carota HOM05D000084 ORTHO05D000639 4.8e-10 68.2 53 66.0
Phvul.001G000500 Phaseolus vulgaris HOM05D000084 ORTHO05D000639 4.8e-10 68.2 53 66.0
Potri.002G003400 Populus trichocarpa HOM05D000084 ORTHO05D000639 4.8e-10 68.2 53 66.0
Sc26g0004770 Simmondsia chinensis HOM05D000084 ORTHO05D000639 4.8e-10 68.2 53 64.2
SGA_v2.0_scaffold161G37863 Striga asiatica HOM05D000084 ORTHO05D000639 4.8e-10 68.2 53 64.2
TPR.G10069 Trifolium pratense HOM05D000084 ORTHO05D000639 4.8e-10 68.2 53 66.0
TWI56G1020 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 4.8e-10 68.2 53 64.2
Actinidia17085 Actinidia chinensis HOM05D000084 ORTHO05D000639 6.2e-10 67.8 53 62.3
Ca_13495_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000639 6.2e-10 67.8 53 62.3
MD00G1064000 Malus domestica HOM05D000084 ORTHO05D000639 6.2e-10 67.8 53 62.3
Medtr1g075610 Medicago truncatula HOM05D000084 ORTHO05D000639 6.2e-10 67.8 53 66.0
Ciclev10002132m.g Citrus clementina HOM05D000084 ORTHO05D000639 8.1e-10 67.4 53 62.3
Sabra02G0002200 Salix brachista HOM05D000084 ORTHO05D000639 8.1e-10 67.4 53 66.0
THA.LOC104813283 Tarenaya hassleriana HOM05D000084 ORTHO05D000639 8.1e-10 67.4 53 64.2
vmacro21746 Vaccinium macrocarpon HOM05D000084 ORTHO05D000639 8.1e-10 67.4 53 60.4
GSVIVG01013440001 Vitis vinifera HOM05D000084 ORTHO05D000639 8.1e-10 67.4 53 64.2
BcaC03g18300 Brassica carinata HOM05D000084 ORTHO05D018640 1.1e-09 67.0 53 60.4
C02p17100 Brassica napus HOM05D000084 ORTHO05D018640 1.1e-09 67.0 53 60.4
BolC2t12445H Brassica oleracea HOM05D000084 ORTHO05D018640 1.1e-09 67.0 53 60.4
BraA07t31749Z Brassica rapa HOM05D000084 ORTHO05D000639 1.1e-09 67.0 53 60.4
CANSAT25G2227 Cannabis sativa HOM05D000084 ORTHO05D000639 1.1e-09 67.0 53 62.3
Haze_22873 Corylus avellana HOM05D000084 ORTHO05D000639 1.1e-09 67.0 44 70.5
Glyma.09G071300 Glycine max HOM05D000084 ORTHO05D000639 1.1e-09 67.0 53 64.2
Lalb_Chr01g0008261 Lupinus albus HOM05D000084 ORTHO05D000639 1.1e-09 67.0 53 62.3
Lalb_Chr01g0008271 Lupinus albus HOM05D000084 ORTHO05D000639 1.1e-09 67.0 53 62.3
MD06G1002500 Malus domestica HOM05D000084 ORTHO05D000639 1.1e-09 67.0 53 62.3
VMungo0647G1324 Vigna mungo HOM05D000084 ORTHO05D000639 1.1e-09 67.0 53 64.2
Atru.chr13.38 Acer truncatum HOM05D000084 ORTHO05D000639 1.4e-09 66.6 53 60.4
EL10Ac1g01853 Beta vulgaris HOM05D000084 ORTHO05D000639 1.4e-09 66.6 53 58.5
BolC6t40102H Brassica oleracea HOM05D000084 ORTHO05D000639 1.4e-09 66.6 57 59.6
CANSAT25G2385 Cannabis sativa HOM05D000084 ORTHO05D000639 1.4e-09 66.6 53 60.4
Cpa.g.c24967.3 Carica papaya HOM05D000084 ORTHO05D000639 1.4e-09 66.6 53 60.4
MELO3C017059.2 Cucumis melo HOM05D000084 ORTHO05D000639 1.4e-09 66.6 53 62.3
CsaV3_4G037650 Cucumis sativus L. HOM05D000084 ORTHO05D000639 1.4e-09 66.6 53 62.3
Glyma.07G070200 Glycine max HOM05D000084 ORTHO05D000639 1.4e-09 66.6 53 64.2
QL02p015981 Quercus lobata HOM05D000084 ORTHO05D000639 1.4e-09 66.6 53 62.3
Sabra05G0199400 Salix brachista HOM05D000084 ORTHO05D000639 1.4e-09 66.6 53 64.2
A06p22260 Brassica napus HOM05D000084 ORTHO05D018640 1.8e-09 66.2 53 62.3
DCAR_017620 Daucus carota HOM05D000084 ORTHO05D000639 1.8e-09 66.2 53 60.4
Glyma.17G262300 Glycine max HOM05D000084 ORTHO05D000639 1.8e-09 66.2 53 62.3
Rhsim06G0002200 Rhododendron simsii HOM05D000084 ORTHO05D000639 1.8e-09 66.2 53 60.4
BcaC06g34849 Brassica carinata HOM05D000084 ORTHO05D000639 2.4e-09 65.9 53 60.4
A07p15380 Brassica napus HOM05D000084 ORTHO05D000639 2.4e-09 65.9 53 60.4
C07p22690 Brassica napus HOM05D000084 ORTHO05D000639 2.4e-09 65.9 53 60.4
BolC7t42801H Brassica oleracea HOM05D000084 ORTHO05D000639 2.4e-09 65.9 53 60.4
BraA07t29277Z Brassica rapa HOM05D000084 ORTHO05D000639 2.4e-09 65.9 53 60.4
HanXRQChr07g0204231 Helianthus annuus HOM05D000084 ORTHO05D000639 2.4e-09 65.9 67 56.7
Prupe.5G003700 Prunus persica HOM05D000084 ORTHO05D000639 2.4e-09 65.9 53 60.4
Aa31LG4G6650 Aethionema arabicum HOM05D000084 ORTHO05D000639 3.1e-09 65.5 53 60.4
BcaC08g47162 Brassica carinata HOM05D000084 ORTHO05D000639 3.1e-09 65.5 53 60.4
Lsat_1_v5_gn_8_26701 Lactuca sativa HOM05D000084 ORTHO05D000639 3.1e-09 65.5 53 62.3
Ah.11g051150 Amaranthus hybridus HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 58.5
AL1G33960 Arabidopsis lyrata HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 60.4
AT1G20930 Arabidopsis thaliana HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 60.4
arahy.Tifrunner.gnm1.ann1.Q1AFG0 Arachis hypogaea HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 62.3
CARHR021400 Cardamine hirsuta HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 60.4
Duzib041G0235 Durio zibethinus HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 60.4
Thhalv10008253m.g Eutrema salsugineum HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 60.4
Thhalv10018908m.g Eutrema salsugineum HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 62.3
Lj5g0022096 Lotus japonicus HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 58.5
Lalb_Chr03g0033701 Lupinus albus HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 60.4
PGR083G0146 Punica granatum HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 58.5
Sp1g18640 Schrenkiella parvula HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 60.4
TAR376G0415 Trochodendron aralioides HOM05D000084 ORTHO05D000639 4.0e-09 65.1 53 58.5
Carub.0001s2041 Capsella rubella HOM05D000084 ORTHO05D000639 5.3e-09 64.7 53 60.4
Glyma.14G224000 Glycine max HOM05D000084 ORTHO05D000639 5.3e-09 64.7 46 67.4
HanXRQChr08g0216781 Helianthus annuus HOM05D000084 ORTHO05D000639 5.3e-09 64.7 53 58.5
RcHm_v2.0_Chr7g0217191 Rosa chinensis HOM05D000084 ORTHO05D000639 5.3e-09 64.7 53 60.4
AL2G36670 Arabidopsis lyrata HOM05D000084 ORTHO05D000639 6.9e-09 64.3 53 60.4
AT1G76540 Arabidopsis thaliana HOM05D000084 ORTHO05D000639 6.9e-09 64.3 53 60.4
CAN.G1330.20 Capsicum annuum HOM05D000084 ORTHO05D000639 6.9e-09 64.3 53 58.5
AUR62035182 Chenopodium quinoa HOM05D000084 ORTHO05D000639 6.9e-09 64.3 53 58.5
AUR62043316 Chenopodium quinoa HOM05D000084 ORTHO05D000639 6.9e-09 64.3 53 58.5
Duzib093G0878 Durio zibethinus HOM05D000084 ORTHO05D000639 6.9e-09 64.3 53 60.4
HanXRQChr07g0204241 Helianthus annuus HOM05D000084 ORTHO05D000639 6.9e-09 64.3 53 56.6
Nitab4.5_0000464g0050 Nicotiana tabacum HOM05D000084 ORTHO05D000639 6.9e-09 64.3 53 60.4
CiPaw.08G077700 Carya illinoinensis HOM05D000084 ORTHO05D000639 9.0e-09 63.9 53 58.5
Nn5g31064 Nelumbo nucifera HOM05D000084 ORTHO05D000639 9.0e-09 63.9 53 56.6
Nitab4.5_0008114g0020 Nicotiana tabacum HOM05D000084 ORTHO05D000639 9.0e-09 63.9 70 51.4
Sp5g31700 Schrenkiella parvula HOM05D000084 ORTHO05D000639 9.0e-09 63.9 53 58.5
Sc06g0008840 Simmondsia chinensis HOM05D000084 ORTHO05D000639 9.0e-09 63.9 54 61.1
Carub.0002s2345 Capsella rubella HOM05D000084 ORTHO05D000639 1.2e-08 63.5 53 60.4
Migut.C00348 Erythranthe guttata HOM05D000084 ORTHO05D000639 1.2e-08 63.5 53 58.5
BcaB03g14291 Brassica carinata HOM05D000084 ORTHO05D000639 1.5e-08 63.2 53 58.5
Hund05068 Selenicereus undatus HOM05D000084 ORTHO05D000639 1.5e-08 63.2 53 58.5
Thecc.08G098500 Theobroma cacao HOM05D000084 ORTHO05D000639 1.5e-08 63.2 53 58.5
Sed0009546 Sechium edule HOM05D000084 ORTHO05D000639 2.0e-08 62.8 53 56.6
Aa31LG7G5120 Aethionema arabicum HOM05D000084 ORTHO05D000639 2.6e-08 62.4 53 56.6
MBI01_g22965_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D000639 2.6e-08 62.4 53 54.7
Cc05_g04100 Coffea canephora HOM05D000084 ORTHO05D000639 3.4e-08 62.0 53 60.4
Oeu030366.1 Olea europaea HOM05D000084 ORTHO05D000639 3.4e-08 62.0 53 56.6
TWI36G1611 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 3.4e-08 62.0 53 58.5
FvH4_5g26360 Fragaria vesca HOM05D000084 ORTHO05D000639 4.5e-08 61.6 53 52.8
FAN04G0258 Fragaria x ananassa HOM05D000084 ORTHO05D000639 4.5e-08 61.6 53 52.8
FAN08G0216 Fragaria x ananassa HOM05D000084 ORTHO05D000639 4.5e-08 61.6 53 52.8
FAN13G0297 Fragaria x ananassa HOM05D000084 ORTHO05D000639 4.5e-08 61.6 53 52.8
FAN18G2300 Fragaria x ananassa HOM05D000084 ORTHO05D000639 4.5e-08 61.6 53 52.8
Eucgr.F01814 Eucalyptus grandis HOM05D000084 ORTHO05D000639 5.8e-08 61.2 53 54.7
Lj4A3G59 Lonicera japonica HOM05D000084 ORTHO05D000639 5.8e-08 61.2 52 55.8
Peaxi162Scf00385g00520 Petunia axillaris HOM05D000084 ORTHO05D000639 5.8e-08 61.2 46 63.0
C05p19570 Brassica napus HOM05D000084 ORTHO05D016646 7.6e-08 60.8 53 56.6
ECA233G2797 Erigeron canadensis HOM05D000084 ORTHO05D000639 7.6e-08 60.8 53 54.7
unitig_26.g9847 Utricularia gibba HOM05D000924 ORTHO05D001209 7.6e-08 60.8 44 63.6
CARHR070090 Cardamine hirsuta HOM05D000084 ORTHO05D000639 9.9e-08 60.5 53 56.6
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.3e-07 60.1 47 59.6
Solyc04g082840.4 Solanum lycopersicum HOM05D000084 ORTHO05D000639 1.3e-07 60.1 53 54.7
Sopen04g036480 Solanum pennellii HOM05D000084 ORTHO05D000639 1.3e-07 60.1 53 54.7
PGSC0003DMG400010003 Solanum tuberosum HOM05D000084 ORTHO05D000639 1.3e-07 60.1 53 54.7
PSO541G0099 Papaver somniferum HOM05D000084 ORTHO05D000639 2.2e-07 59.3 53 50.9
PSO675G4169 Papaver somniferum HOM05D000084 ORTHO05D000639 2.2e-07 59.3 53 50.9
Aqoxy5G00955 Aquilegia oxysepala HOM05D000084 ORTHO05D000639 2.9e-07 58.9 53 52.8
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 3.8e-07 58.5 40 65.0
HPP92_017808 Vanilla planifolia HOM05D000084 ORTHO05D000639 3.8e-07 58.5 53 52.8
BcaC05g26000 Brassica carinata HOM05D000084 ORTHO05D016646 4.9e-07 58.2 46 58.7
BolC5t30659H Brassica oleracea HOM05D000084 ORTHO05D016646 6.4e-07 57.8 44 61.4
Zm00001eb318980 Zea mays HOM05D000084 ORTHO05D000639 6.4e-07 57.8 53 52.8
Zm00001eb017510 Zea mays HOM05D000084 ORTHO05D000639 8.4e-07 57.4 53 52.8
Zm00001eb035350 Zea mays HOM05D000084 ORTHO05D000639 1.1e-06 57.0 53 50.9
Zm00001eb389390 Zea mays HOM05D000084 ORTHO05D000639 1.1e-06 57.0 53 50.9
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.4e-06 56.6 28 85.7
ATR1046G001 Amborella trichopoda HOM05D000084 ORTHO05D000639 2.4e-06 55.8 53 47.2
Os08g0512600 Oryza sativa ssp. japonica HOM05D000084 ORTHO05D000639 3.2e-06 55.5 53 50.9
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 3.2e-06 55.5 39 64.1
AUR62038700 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-06 55.1 59 47.5
DCAR_025314 Daucus carota HOM05D000084 ORTHO05D016646 4.2e-06 55.1 44 63.6
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 4.2e-06 55.1 28 78.6
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 7.1e-06 54.3 28 82.1
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 7.1e-06 54.3 28 82.1
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 7.1e-06 54.3 28 82.1
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 7.1e-06 54.3 39 61.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 9.3e-06 53.9 47 55.3
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 9.3e-06 53.9 28 82.1
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.3e-06 53.9 39 61.5
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.3e-06 53.9 39 61.5
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 9.3e-06 53.9 50 50.0
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 9.3e-06 53.9 39 61.5


User provided reference genes

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