Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 2.2e-200 702.2 388 100.0
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.4e-154 550.1 389 81.2
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.0e-152 543.9 392 82.7
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.4e-122 443.0 398 69.1
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.6e-121 440.3 390 68.2
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.1e-114 417.5 313 75.4
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.3e-104 384.0 397 65.2
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.5e-103 380.6 396 64.1
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.2e-100 370.9 388 61.1
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.5e-100 370.5 392 61.2
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 4.4e-100 369.0 387 61.5
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.4e-93 346.7 387 58.7
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.8e-88 330.5 392 57.7
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 6.7e-88 328.6 402 57.5
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 1.5e-87 327.4 401 56.9
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.6e-86 323.9 393 55.7
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 6.2e-86 322.0 403 56.1
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 8.1e-86 321.6 396 54.3
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.8e-85 320.5 396 55.1
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 5.3e-85 318.9 390 55.9
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 9.0e-85 318.2 399 53.9
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.0e-83 314.7 402 54.7
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.7e-83 313.9 391 55.2
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.2e-83 313.5 400 55.2
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 4.6e-81 305.8 400 55.2
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 7.9e-81 305.1 399 52.6
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 7.9e-81 305.1 400 55.5
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.8e-80 303.9 404 52.7
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 3.9e-80 302.8 397 53.9
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 6.7e-80 302.0 399 53.9
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 4.3e-79 299.3 330 60.0
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.3e-78 297.7 394 54.1
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.6e-78 297.4 399 52.9
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.1e-77 294.7 399 51.4
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-77 294.3 391 53.7
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 9.0e-77 291.6 344 57.6
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.5e-76 290.8 395 52.4
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.0e-75 288.1 395 53.4
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.7e-75 287.3 407 49.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 6.5e-75 285.4 403 50.4
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.1e-74 284.6 398 52.5
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.1e-74 284.6 407 50.6
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.5e-74 283.5 404 49.8
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.2e-74 283.1 366 53.6
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 3.2e-74 283.1 330 55.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 7.1e-74 282.0 410 49.5
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.5e-73 279.6 410 50.2
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 6.1e-73 278.9 400 54.0
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-72 278.1 379 52.8
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 2.3e-72 276.9 392 50.0
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.7e-72 275.4 343 53.6
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.7e-72 275.4 393 50.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 3.3e-71 273.1 418 50.0
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 4.3e-71 272.7 387 51.2
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 9.7e-71 271.6 351 52.1
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.6e-70 270.8 348 52.3
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.1e-69 268.1 393 50.4
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.5e-68 264.2 405 51.1
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.5e-68 264.2 370 49.2
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 2.6e-68 263.5 405 48.4
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 7.7e-68 261.9 428 48.6
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.0e-67 261.5 390 49.7
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 2.2e-67 260.4 411 50.4
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 2.9e-67 260.0 383 50.7
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 3.8e-67 259.6 336 55.7
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 3.8e-67 259.6 326 54.0
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.1e-66 258.1 324 53.1
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.4e-66 257.7 392 49.5
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 2.5e-66 256.9 430 47.9
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.2e-66 256.1 326 53.7
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.7e-65 253.4 389 46.5
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 4.6e-65 252.7 294 60.9
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.8e-62 243.4 308 56.5
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.8e-62 243.4 393 47.1
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 2.8e-62 243.4 402 45.3
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 6.3e-62 242.3 399 48.6
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.1e-61 241.5 368 51.4
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 9.1e-61 238.4 385 46.8
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 3.4e-60 236.5 399 46.4
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.5e-58 230.3 392 47.7
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 3.2e-58 229.9 370 47.6
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 4.2e-58 229.6 397 47.1
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 5.5e-58 229.2 394 46.2
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 5.5e-58 229.2 370 47.0
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.0e-56 224.9 335 47.8
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.4e-56 224.6 399 45.1
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.4e-56 224.6 369 47.4
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 1.4e-56 224.6 393 43.8
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.8e-56 224.2 320 50.3
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.3e-56 223.8 260 58.8
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 3.3e-55 219.9 415 44.1
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 9.7e-55 218.4 367 45.5
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 9.7e-55 218.4 399 47.4
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 3.1e-53 213.4 331 48.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 4.1e-53 213.0 364 44.8
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 4.1e-53 213.0 397 47.1
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.5e-52 211.1 390 41.5
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.6e-52 210.3 328 48.2
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.6e-52 210.3 328 48.2
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 4.5e-52 209.5 328 47.9
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 7.7e-52 208.8 316 48.4
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 2.2e-51 207.2 370 47.8
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 5.0e-51 206.1 400 45.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 6.5e-51 205.7 331 47.1
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 6.5e-51 205.7 334 47.6
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 8.5e-51 205.3 331 47.1
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.5e-50 204.5 281 50.5
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.9e-50 204.1 328 47.3
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.9e-50 204.1 328 47.3
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.5e-50 203.8 407 45.2
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 3.2e-50 203.4 260 55.0
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.2e-50 203.4 272 54.4
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.2e-50 203.4 272 54.4
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 5.5e-50 202.6 374 42.2
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 3.6e-49 199.9 332 47.3
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 6.7e-48 195.7 348 45.4
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 6.7e-48 195.7 413 39.0
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.3e-43 181.4 391 40.9
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 2.5e-42 177.2 208 51.9
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 3.6e-41 173.3 361 43.5
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 4.8e-38 162.9 348 39.9
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 9.4e-34 148.7 385 36.6
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.2e-33 148.3 236 47.5
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 2.7e-33 147.1 183 50.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-27 128.3 201 51.7
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-27 128.3 201 51.7
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 3.8e-27 126.7 290 36.9
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 5.0e-27 126.3 260 39.2
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 3.6e-25 120.2 386 33.2
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.0e-24 118.6 95 66.3
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-24 118.2 217 47.9
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 8.9e-24 115.5 181 44.2
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 8.9e-24 115.5 195 48.7
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 3.4e-23 113.6 119 57.1
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-21 108.2 377 34.5
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.9e-19 100.1 261 36.4
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.9e-19 100.1 140 50.7
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 4.0e-16 90.1 102 61.8
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.4e-15 87.0 203 41.4
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.4e-15 86.7 203 41.4
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.8e-15 85.5 203 40.9
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-14 85.1 203 40.9
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.7e-14 83.6 203 40.4
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.9e-14 83.2 203 40.9
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.9e-13 81.3 63 71.4
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.7e-12 77.4 118 45.8
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 5.0e-11 73.2 206 31.6
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 1.1e-08 65.5 74 60.8
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-08 63.5 166 40.4
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 6.4e-06 56.2 131 42.0
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 8.3e-06 55.8 110 43.6


User provided reference genes

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