Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 1.1e-75 286.6 142 100.0
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 8.7e-62 240.4 147 85.7
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 5.5e-56 221.1 147 81.0
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 1.2e-39 166.8 145 64.1
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.6e-39 165.2 142 65.5
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 6.1e-39 164.5 144 63.9
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 9.1e-35 150.6 147 64.6
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 2.9e-33 145.6 144 63.2
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 1.0e-30 137.1 143 55.9
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 1.5e-24 116.7 151 53.0
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 1.9e-24 116.3 146 55.5
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 1.2e-23 113.6 145 55.2
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 1.2e-23 113.6 146 52.7
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 2.7e-23 112.5 136 54.4
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 4.7e-23 111.7 157 54.1
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 6.1e-23 111.3 146 54.1
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 8.0e-23 110.9 136 54.4
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 1.1e-19 100.5 147 51.0
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 1.4e-19 100.1 160 49.4
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 3.5e-18 95.5 142 48.6
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.0e-17 94.0 142 47.9
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 2.3e-17 92.8 147 45.6
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 2.3e-17 92.8 143 46.2
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.8e-17 92.0 161 41.0
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.8e-17 92.0 143 44.1
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.5e-17 91.3 145 44.1
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 3.3e-16 89.0 166 46.4
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 5.5e-16 88.2 157 45.2
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 1.2e-15 87.0 157 45.2
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 1.6e-15 86.7 164 41.5
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 2.1e-15 86.3 142 48.6
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 3.6e-15 85.5 144 44.4
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.7e-15 85.1 146 41.1
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 8.0e-15 84.3 159 42.8
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.4e-14 83.6 142 43.7
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 2.3e-14 82.8 158 42.4
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 4.0e-14 82.0 160 41.2
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 5.2e-14 81.6 163 44.2
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 8.9e-14 80.9 145 40.7
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.5e-13 80.1 144 44.4
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 1.5e-13 80.1 143 46.9
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.5e-13 80.1 142 43.7
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.5e-13 77.8 163 43.6
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.3e-12 77.0 163 42.9
arahy.Tifrunner.gnm1.ann1.I085MR Arachis hypogaea HOM05D004793 ORTHO05D038859 2.2e-12 76.3 172 36.0
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 2.2e-12 76.3 148 41.9
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 2.8e-12 75.9 145 40.7
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 2.8e-12 75.9 142 40.8
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 6.3e-12 74.7 142 41.5
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 1.4e-11 73.6 150 41.3
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.8e-11 73.2 160 40.6
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 5.4e-11 71.6 162 38.9
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 7.0e-11 71.2 143 38.5
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.0e-11 71.2 149 38.3
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 9.2e-11 70.9 144 41.0
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.2e-10 70.5 143 41.3
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 1.6e-10 70.1 145 44.1
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 1.6e-10 70.1 144 38.9
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 2.0e-10 69.7 146 39.7
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.7e-10 69.3 152 38.8
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 2.7e-10 69.3 148 41.9
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.7e-10 69.3 142 39.4
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.7e-10 69.3 142 41.5
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.7e-10 69.3 142 41.5
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 2.7e-10 69.3 142 41.5
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 4.5e-10 68.6 142 39.4
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 5.9e-10 68.2 161 38.5
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 7.8e-10 67.8 150 38.0
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 1.3e-09 67.0 148 37.8
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.7e-09 66.6 147 38.8
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 1.7e-09 66.6 149 39.6
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.3e-09 66.2 148 35.8
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 2.9e-09 65.9 144 36.1
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.8e-09 65.5 142 37.3
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 3.8e-09 65.5 155 36.8
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 6.6e-09 64.7 145 40.0
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 6.6e-09 64.7 148 38.5
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 8.6e-09 64.3 143 40.6
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.1e-08 63.9 143 40.6
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.1e-08 63.9 142 37.3
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.1e-08 63.9 146 37.0
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.1e-08 63.9 143 37.1
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.5e-08 63.5 142 35.9
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 1.5e-08 63.5 146 37.7
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 1.9e-08 63.2 141 38.3
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 1.9e-08 63.2 141 38.3
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 1.9e-08 63.2 139 36.0
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.5e-08 62.8 143 39.9
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 4.3e-08 62.0 142 36.6
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 4.3e-08 62.0 148 39.9
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 5.6e-08 61.6 142 38.7
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 5.6e-08 61.6 155 34.2
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 9.5e-08 60.8 140 41.4
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 9.5e-08 60.8 142 38.0
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 1.2e-07 60.5 140 35.7
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.2e-07 60.5 140 35.7
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 1.2e-07 60.5 152 36.8
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 1.6e-07 60.1 139 34.5
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 1.6e-07 60.1 149 38.9
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.6e-07 60.1 140 35.7
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.6e-07 60.1 140 35.7
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 1.6e-07 60.1 159 37.7
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 1.6e-07 60.1 148 37.8
arahy.Tifrunner.gnm1.ann1.FQ33KH Arachis hypogaea HOM05D004793 ORTHO05D038859 2.1e-07 59.7 184 33.2
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.1e-07 59.7 140 35.0
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.8e-07 59.3 140 35.7
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.8e-07 59.3 142 36.6
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.8e-07 59.3 142 35.9
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.8e-07 59.3 142 35.9
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 2.8e-07 59.3 144 38.2
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 3.6e-07 58.9 148 37.8
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 4.7e-07 58.5 69 50.7
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 4.7e-07 58.5 142 36.6
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.7e-07 58.5 142 35.2
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.7e-07 58.5 142 35.2
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 4.7e-07 58.5 146 37.0
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 6.1e-07 58.2 142 31.0
Solyc11g012520.1 Solanum lycopersicum HOM05D018828 ORTHO05D004423 8.0e-07 57.8 144 41.0
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.0e-06 57.4 146 35.6
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.0e-06 57.4 146 35.6
Oeu063642.1 Olea europaea HOM05D004793 ORTHO05D004423 1.0e-06 57.4 89 44.9
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 1.4e-06 57.0 109 39.4
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.4e-06 57.0 142 38.7
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 1.4e-06 57.0 143 37.8
Sc17g0007950 Simmondsia chinensis HOM05D004793 ORTHO05D004423 1.4e-06 57.0 92 46.7
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 1.4e-06 57.0 140 32.9
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.3e-06 56.2 142 35.9
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 3.0e-06 55.8 52 61.5
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 3.0e-06 55.8 52 61.5
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 4.0e-06 55.5 50 62.0
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.0e-06 55.5 144 33.3
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 5.2e-06 55.1 142 34.5
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 6.8e-06 54.7 130 34.6
FvH4_3g00610 Fragaria vesca HOM05D020126 ORTHO05D004423 6.8e-06 54.7 164 32.3
MELO3C007445.2 Cucumis melo HOM05D028401 ORTHO05D034761 8.9e-06 54.3 42 66.7
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 8.9e-06 54.3 47 66.0


User provided reference genes

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