Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 2.4e-48 195.3 104 100.0
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 2.7e-28 128.6 104 60.6
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 6.7e-27 124.0 104 53.8
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 4.3e-26 121.3 106 54.7
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 4.8e-25 117.9 104 52.9
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 2.9e-22 108.6 108 57.4
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 3.2e-21 105.1 106 49.1
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 8.2e-17 90.5 98 41.8
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 8.2e-17 90.5 102 44.1
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 1.8e-16 89.4 94 40.4
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 2.0e-15 85.9 107 40.2
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 3.4e-15 85.1 71 49.3
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 3.4e-15 85.1 107 40.2
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 4.5e-15 84.7 104 38.5
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 1.0e-14 83.6 101 41.6
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 1.0e-14 83.6 63 49.2
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 1.0e-14 83.6 90 43.3
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 1.3e-14 83.2 113 36.3
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 1.7e-14 82.8 88 38.6
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 5.0e-14 81.3 101 43.6
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 6.5e-14 80.9 97 40.2
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.1e-13 80.1 102 40.2
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 1.1e-13 80.1 100 35.0
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 1.4e-13 79.7 101 36.6
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 2.5e-13 79.0 103 36.9
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 3.2e-13 78.6 72 43.1
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 4.2e-13 78.2 103 33.0
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 9.4e-13 77.0 102 38.2
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 1.6e-12 76.3 102 33.3
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 1.6e-12 76.3 103 32.0
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 1.6e-12 76.3 103 32.0
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 2.1e-12 75.9 94 36.2
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 2.7e-12 75.5 107 36.4
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 3.6e-12 75.1 100 37.0
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 6.1e-12 74.3 102 33.3
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 1.4e-11 73.2 98 32.7
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 1.4e-11 73.2 63 46.0
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.8e-11 72.8 100 35.0
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 1.8e-11 72.8 104 35.6
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 3.0e-11 72.0 82 41.5
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 5.1e-11 71.2 103 34.0
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 6.7e-11 70.9 89 33.7
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 8.8e-11 70.5 95 33.7
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 8.8e-11 70.5 85 37.6
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 1.1e-10 70.1 91 37.4
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 2.0e-10 69.3 112 38.4
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 2.5e-10 68.9 90 33.3
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.5e-10 68.9 100 33.0
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.5e-10 68.9 101 35.6
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 7.4e-10 67.4 66 42.4
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 2.2e-09 65.9 105 33.3
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 4.8e-09 64.7 68 38.2
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 1.4e-08 63.2 82 34.1
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 1.4e-08 63.2 68 41.2
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 1.4e-08 63.2 106 34.9
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 1.8e-08 62.8 64 43.8
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 3.1e-08 62.0 76 38.2
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 3.1e-08 62.0 76 38.2
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 4.1e-08 61.6 67 40.3
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 5.3e-08 61.2 109 33.9
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 5.3e-08 61.2 109 33.9
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 5.3e-08 61.2 109 33.9
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 6.9e-08 60.8 64 40.6
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 9.1e-08 60.5 109 33.9
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 9.1e-08 60.5 109 33.9
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 1.2e-07 60.1 66 37.9
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 1.5e-07 59.7 64 40.6
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 1.5e-07 59.7 52 42.3
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 2.0e-07 59.3 104 32.7
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 2.0e-07 59.3 109 33.0
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 2.0e-07 59.3 67 41.8
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 2.0e-07 59.3 67 41.8
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 2.0e-07 59.3 67 41.8
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 3.4e-07 58.5 65 40.0
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 5.9e-07 57.8 78 37.2
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 5.9e-07 57.8 63 34.9
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 2.9e-06 55.5 40 52.5
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 2.9e-06 55.5 40 52.5
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 5.0e-06 54.7 80 38.8
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 5.0e-06 54.7 40 52.5
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 5.0e-06 54.7 40 52.5


User provided reference genes

Program Settings