Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.1e-147 526.9 348 100.0
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.5e-99 367.1 347 70.0
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.7e-95 353.6 348 65.5
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 3.1e-84 316.2 348 67.5
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 8.4e-82 308.1 341 68.9
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.2e-80 304.3 338 61.2
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 3.9e-79 299.3 343 61.2
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.5e-75 287.3 338 62.7
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 2.6e-75 286.6 328 66.8
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 7.8e-72 275.0 346 60.7
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.3e-70 269.2 336 57.4
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 9.6e-70 268.1 350 56.0
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 2.1e-69 266.9 340 66.5
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 2.4e-68 263.5 340 65.9
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 5.8e-67 258.8 351 61.3
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.7e-66 257.3 336 61.0
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 6.4e-66 255.4 336 61.9
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 3.2e-65 253.1 336 57.7
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 7.1e-65 251.9 349 57.0
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 9.3e-65 251.5 349 49.0
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.1e-64 250.4 349 57.0
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 3.5e-64 249.6 314 51.6
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 3.0e-63 246.5 354 47.2
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.0e-63 246.5 345 61.7
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 8.7e-63 245.0 382 62.3
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.1e-62 244.6 342 61.4
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 3.3e-62 243.0 306 57.2
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.6e-62 242.3 357 60.2
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 9.6e-62 241.5 349 50.4
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-61 241.1 353 53.5
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.8e-61 239.2 347 47.0
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.1e-60 238.0 349 50.7
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 2.4e-60 236.9 358 46.6
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 9.0e-60 235.0 357 55.2
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.0e-59 233.8 349 55.0
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 4.5e-59 232.6 341 59.5
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 5.8e-59 232.3 348 48.0
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 9.9e-59 231.5 344 57.3
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 2.2e-58 230.3 360 49.4
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.9e-58 229.9 344 52.9
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.8e-58 229.6 352 52.3
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 4.9e-58 229.2 344 52.9
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 6.4e-58 228.8 349 49.0
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 4.2e-57 226.1 362 42.8
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.2e-57 226.1 351 45.3
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.2e-57 226.1 351 49.6
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 4.2e-57 226.1 350 48.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 5.5e-57 225.7 344 53.5
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.6e-56 224.2 342 47.1
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 4.6e-56 222.6 348 55.5
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.3e-55 221.1 350 48.0
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 2.3e-55 220.3 356 47.2
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 5.1e-55 219.2 315 46.0
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 5.1e-55 219.2 349 44.1
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.9e-54 217.2 337 61.4
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 3.3e-54 216.5 329 56.2
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.3e-54 216.5 348 54.9
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 7.4e-54 215.3 357 50.1
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 7.4e-54 215.3 359 51.3
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.6e-53 214.2 308 58.8
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 2.1e-53 213.8 346 54.3
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 6.2e-53 212.2 357 51.5
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.8e-52 210.7 346 57.8
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 3.1e-52 209.9 338 49.4
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 6.9e-52 208.8 355 49.3
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 9.0e-52 208.4 331 54.7
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.0e-52 208.4 337 54.9
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.2e-51 208.0 330 43.3
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 3.4e-51 206.5 347 50.7
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 4.5e-51 206.1 347 50.7
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 7.6e-51 205.3 356 55.9
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.0e-50 204.9 354 54.0
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.3e-50 204.5 343 54.2
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 3.8e-50 203.0 348 51.4
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 4.9e-50 202.6 350 54.3
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 6.5e-50 202.2 347 52.4
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 6.5e-50 202.2 347 52.4
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 6.5e-50 202.2 347 52.4
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.9e-49 200.7 350 49.1
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 5.5e-49 199.1 340 49.7
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 5.5e-49 199.1 342 45.0
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 7.1e-49 198.7 369 47.4
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 9.3e-49 198.4 370 49.5
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.2e-48 198.0 325 49.5
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 1.2e-48 198.0 285 52.3
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 1.6e-48 197.6 355 52.1
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 2.1e-48 197.2 346 48.0
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 3.5e-48 196.4 342 41.2
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 3.5e-48 196.4 357 45.1
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 4.6e-48 196.1 352 52.6
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 6.0e-48 195.7 353 48.4
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 6.0e-48 195.7 364 45.9
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.0e-47 194.9 235 48.9
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 1.3e-47 194.5 351 45.3
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.8e-47 194.1 328 48.5
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 3.9e-47 193.0 397 42.8
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 8.7e-47 191.8 355 42.8
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 4.3e-46 189.5 311 51.1
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 5.7e-46 189.1 338 45.0
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.3e-45 188.0 325 44.3
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.6e-45 187.6 348 44.5
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.7e-45 186.4 317 49.8
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.7e-45 186.4 344 56.4
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.8e-45 186.0 322 40.1
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 6.3e-45 185.7 349 44.7
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 6.3e-45 185.7 317 49.8
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 8.2e-45 185.3 295 53.2
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-44 184.9 351 47.0
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 5.3e-44 182.6 338 40.8
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 5.3e-44 182.6 357 48.2
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.3e-44 182.6 348 55.2
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.2e-43 181.4 348 54.9
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.4e-43 179.9 331 46.8
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.0e-42 178.3 333 37.2
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.7e-42 177.6 323 52.6
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 6.5e-42 175.6 407 41.8
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 4.6e-40 169.5 163 63.8
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 3.9e-39 166.4 306 45.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 5.1e-39 166.0 283 50.5
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 7.4e-38 162.2 231 54.1
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.3e-37 161.4 364 47.3
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.7e-37 159.8 356 43.8
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.1e-36 158.3 354 39.0
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 5.3e-36 156.0 307 41.7
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.7e-35 152.1 137 59.9
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 7.7e-35 152.1 297 41.8
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.0e-34 151.8 159 52.8
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 1.7e-34 151.0 307 42.3
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.2e-34 150.6 345 36.8
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 3.8e-34 149.8 189 49.2
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.2e-32 144.8 259 53.7
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-32 144.8 274 45.3
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.6e-32 143.3 351 39.9
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.9e-32 142.1 316 53.2
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.1e-30 138.3 337 40.1
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 2.8e-29 133.7 216 40.3
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 3.7e-29 133.3 232 53.9
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 2.4e-28 130.6 359 32.9
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.4e-28 130.6 347 34.9
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.5e-27 127.9 376 37.0
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.6e-27 127.1 116 61.2
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.4e-27 126.7 150 50.7
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 8.5e-26 122.1 274 47.8
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 8.5e-26 122.1 364 39.8
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.1e-25 121.7 246 34.6
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 9.4e-25 118.6 157 49.7
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 2.1e-24 117.5 293 37.2
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.8e-23 114.4 337 32.0
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 5.2e-23 112.8 329 34.3
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 1.6e-19 101.3 339 34.5
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.6e-19 101.3 381 34.6
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 7.2e-17 92.4 162 39.5
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 6.1e-16 89.4 356 39.0
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.2e-08 65.1 191 29.8
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.6e-08 64.7 96 49.0
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 1.8e-07 61.2 75 54.7
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 4.4e-06 56.6 61 52.5


User provided reference genes

Program Settings