Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 2.5e-95 352.1 174 100.0
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 6.9e-85 317.4 174 90.2
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 9.0e-85 317.0 175 88.6
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 2.4e-77 292.4 175 83.4
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 3.9e-72 275.0 174 78.7
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 5.1e-72 274.6 174 78.2
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 2.2e-70 269.2 174 77.0
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 1.8e-69 266.2 174 78.2
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 5.0e-67 258.1 175 74.9
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 3.2e-66 255.4 179 76.5
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 3.2e-66 255.4 179 76.5
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 1.9e-63 246.1 174 71.8
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 1.9e-63 246.1 170 72.4
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 2.5e-63 245.7 174 71.8
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 1.5e-60 236.5 177 67.2
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 2.2e-59 232.6 172 67.4
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 2.2e-59 232.6 175 68.0
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 3.8e-59 231.9 173 67.1
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 1.1e-58 230.3 174 64.9
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 1.9e-58 229.6 175 65.7
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 2.5e-58 229.2 174 67.2
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 4.2e-58 228.4 174 65.5
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 1.2e-57 226.9 171 67.8
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 1.6e-57 226.5 175 67.4
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 3.6e-57 225.3 171 66.7
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 1.8e-56 223.0 232 53.0
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 2.3e-56 222.6 182 63.7
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 3.0e-56 222.2 168 65.5
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 3.9e-56 221.9 182 63.7
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 2.0e-55 219.5 167 65.9
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 2.0e-55 219.5 122 85.2
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 1.3e-54 216.9 177 64.4
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 1.3e-54 216.9 185 63.2
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 1.3e-54 216.9 171 64.9
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 4.8e-54 214.9 174 63.2
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 6.3e-54 214.5 186 62.9
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 6.3e-54 214.5 176 64.2
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 8.2e-54 214.2 143 73.4
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 1.4e-53 213.4 207 56.0
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 1.4e-53 213.4 183 63.4
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 3.1e-53 212.2 174 63.8
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 6.9e-53 211.1 138 73.2
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 9.1e-53 210.7 176 61.4
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 1.2e-52 210.3 178 61.2
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 2.0e-52 209.5 174 62.6
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 3.4e-52 208.8 170 62.4
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 4.5e-52 208.4 167 62.3
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 5.9e-52 208.0 177 63.3
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 2.9e-51 205.7 174 62.1
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 2.9e-51 205.7 174 62.1
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 2.9e-51 205.7 175 61.1
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 8.5e-51 204.1 174 61.5
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 8.5e-51 204.1 174 61.5
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 1.9e-50 203.0 165 62.4
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 1.9e-50 203.0 168 61.3
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 1.9e-50 203.0 167 62.3
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 2.5e-50 202.6 126 75.4
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 2.5e-50 202.6 174 60.9
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 3.2e-50 202.2 177 60.5
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 9.4e-50 200.7 174 62.1
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 2.7e-49 199.1 155 64.5
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 1.4e-48 196.8 125 74.4
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.4e-48 196.8 174 60.9
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 1.8e-48 196.4 127 73.2
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 3.0e-48 195.7 170 60.0
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 8.8e-48 194.1 146 65.8
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 2.0e-47 193.0 153 63.4
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 3.3e-47 192.2 151 64.9
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 4.4e-47 191.8 175 57.7
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 2.8e-46 189.1 168 57.1
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 3.7e-46 188.7 123 73.2
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 2.4e-45 186.0 125 72.0
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 3.1e-45 185.7 127 68.5
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 4.1e-45 185.3 153 59.5
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 1.2e-44 183.7 149 63.1
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 2.2e-43 179.5 120 71.7
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 4.2e-42 175.3 120 69.2
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 7.2e-42 174.5 176 58.0
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 1.6e-41 173.3 200 52.0
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 2.7e-41 172.6 120 68.3
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 8.0e-41 171.0 127 66.1
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 2.3e-40 169.5 123 65.0
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 2.0e-39 166.4 120 66.7
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 7.5e-39 164.5 122 66.4
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 9.7e-39 164.1 121 62.0
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 2.2e-38 162.9 172 51.7
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 1.9e-34 149.8 136 56.6
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 3.2e-34 149.1 118 58.5
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 2.7e-33 146.0 92 76.1
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 1.4e-32 143.7 126 57.9
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 8.8e-32 141.0 122 59.0
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 3.4e-31 139.0 124 58.1
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 4.1e-29 132.1 121 59.5
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 4.5e-28 128.6 170 45.9
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 4.9e-22 108.6 90 61.1
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 4.9e-22 108.6 174 43.1
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 1.3e-19 100.5 90 53.3
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 2.1e-17 93.2 127 38.6
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 3.4e-15 85.9 86 55.8
RcHm_v2.0_Chr5g0002331 Rosa chinensis HOM05D007052 ORTHO05D008871 8.3e-14 81.3 50 78.0
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 2.4e-13 79.7 135 34.8
Cre01.g030350 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 5.4e-13 78.6 124 39.5
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 2.0e-12 76.6 168 31.5
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 4.6e-12 75.5 85 50.6
FAN25G3667 Fragaria x ananassa HOM05D007052 ORTHO05D008871 3.9e-11 72.4 44 77.3
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 2.5e-10 69.7 48 62.5
PRCOL_00004464 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 3.3e-10 69.3 119 32.8
Nitab4.5_0007209g0010 Nicotiana tabacum HOM05D007052 ORTHO05D008871 1.4e-08 63.9 39 71.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 5.8e-07 58.5 133 30.8
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.9e-06 56.2 133 30.1
PRCOL_00003373 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 2.9e-06 56.2 127 31.5
MCO14G271 Micromonas commoda HOM05D007052 ORTHO05D008871 6.4e-06 55.1 123 32.5
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.3e-06 54.7 133 29.3


User provided reference genes

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