Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 0.0e+00 1321.2 632 100.0
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 0.0e+00 1246.9 632 93.2
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 0.0e+00 1218.4 633 90.7
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1201.0 632 88.6
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1191.0 632 88.0
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 0.0e+00 1186.8 632 87.0
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 0.0e+00 1175.6 632 86.7
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 0.0e+00 1119.8 633 82.9
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 0.0e+00 1109.4 602 86.4
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 0.0e+00 1085.5 635 78.3
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 0.0e+00 1080.9 635 79.8
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 0.0e+00 1079.3 635 77.6
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1078.2 634 78.9
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1078.2 634 78.9
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 3.6e-309 1064.3 635 77.0
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 4.0e-308 1060.8 635 76.7
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 2.6e-307 1058.1 635 77.8
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 3.4e-307 1057.7 635 77.8
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 1.7e-306 1055.4 635 77.8
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 1.4e-305 1052.4 635 77.8
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.9e-305 1052.0 635 76.5
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.4e-305 1051.6 635 76.1
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 5.4e-305 1050.4 634 76.5
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 3.5e-304 1047.7 634 75.7
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 3.5e-304 1047.7 635 76.5
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 4.3e-302 1040.8 635 76.4
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 4.0e-300 1034.2 637 75.2
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 1.9e-297 1025.4 611 77.3
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 1.9e-297 1025.4 635 75.1
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 2.8e-293 1011.5 593 77.9
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 2.0e-291 1005.4 634 73.7
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 6.4e-290 1000.3 642 71.7
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 4.3e-286 987.6 633 72.2
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 4.8e-285 984.2 635 73.4
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.8e-284 982.2 635 73.2
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 6.4e-282 973.8 635 71.3
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.7e-280 968.4 635 70.1
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.5e-278 961.8 635 69.3
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 8.1e-277 956.8 635 68.7
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 4.0e-276 954.5 635 69.6
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 3.5e-272 941.4 624 69.4
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 5.1e-271 937.6 635 68.5
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 2.4e-268 928.7 641 66.0
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 7.2e-249 864.0 646 64.1
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 2.2e-242 842.4 639 62.6
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 2.7e-240 835.5 636 62.3
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.0e-239 833.6 635 62.5
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 2.2e-237 825.9 638 61.6
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 4.8e-237 824.7 638 61.4
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 3.1e-236 822.0 637 61.2
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 4.5e-235 818.1 636 61.0
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 4.5e-235 818.1 636 61.0
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 4.7e-232 808.1 536 72.0
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.4e-228 796.6 650 58.6
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.1e-225 786.9 636 59.6
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.8e-221 772.3 547 66.0
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 3.5e-219 765.4 638 57.8
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 6.6e-186 654.8 641 50.4
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 2.4e-180 636.3 641 48.2
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 9.6e-177 624.4 642 48.3
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 5.4e-172 608.6 395 70.9
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 9.7e-137 491.5 305 74.8
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.1e-131 473.8 740 36.6
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 2.0e-121 440.7 239 82.0
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 3.3e-113 413.3 278 68.3
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 7.5e-113 412.1 273 70.0
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 6.5e-109 399.1 245 75.1
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 8.8e-106 388.7 224 80.8
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 1.4e-103 381.3 248 69.4
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 2.9e-101 373.6 261 67.8
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 9.5e-100 368.6 254 68.9
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.6e-99 367.9 273 63.0
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 4.7e-99 366.3 253 68.0
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 4.7e-99 366.3 273 62.6
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 1.8e-90 337.8 254 62.6
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 4.9e-88 329.7 255 60.4
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 5.2e-66 256.5 257 52.9
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 5.3e-58 229.9 130 86.2
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 3.5e-54 217.2 170 58.2
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 5.5e-39 166.8 368 34.0
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 4.6e-38 163.7 372 33.3
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 6.0e-38 163.3 384 32.0
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 6.0e-38 163.3 370 32.7
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.0e-37 162.5 379 31.4
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 1.8e-37 161.8 188 49.5
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 5.1e-37 160.2 374 32.4
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 5.1e-37 160.2 372 33.9
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 8.7e-37 159.5 373 31.9
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.1e-36 159.1 365 33.7
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 1.5e-36 158.7 373 31.9
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.5e-36 158.7 359 33.4
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 3.3e-36 157.5 369 29.8
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 4.3e-36 157.1 376 31.9
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 7.4e-36 156.4 389 30.1
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 9.6e-36 156.0 389 30.1
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 9.6e-36 156.0 379 31.4
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 9.6e-36 156.0 366 31.7
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.3e-35 155.6 395 30.1
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.3e-35 155.6 376 31.1
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 2.1e-35 154.8 368 32.9
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 2.8e-35 154.5 370 32.4
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 2.8e-35 154.5 379 31.4
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 3.7e-35 154.1 369 30.1
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 4.8e-35 153.7 365 31.2
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 4.8e-35 153.7 365 31.2
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 6.2e-35 153.3 383 29.8
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 8.2e-35 152.9 370 31.9
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.1e-34 152.5 372 31.2
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.4e-34 152.1 370 33.0
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.4e-34 152.1 369 31.2
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.4e-34 152.1 355 29.0
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.4e-34 152.1 379 31.4
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.4e-34 152.1 376 32.2
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.8e-34 151.8 395 31.6
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.8e-34 151.8 394 30.5
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.0e-34 150.6 381 29.4
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 4.0e-34 150.6 376 31.6
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 4.0e-34 150.6 370 31.9
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.3e-34 150.2 371 30.7
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 9.0e-34 149.4 375 30.1
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 9.0e-34 149.4 372 31.7
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 2.6e-33 147.9 376 33.0
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 4.5e-33 147.1 374 29.9
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 5.8e-33 146.7 371 29.6
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 5.8e-33 146.7 379 30.1
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 1.3e-32 145.6 130 56.9
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 2.2e-32 144.8 370 30.8
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.2e-32 144.8 369 30.9
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.2e-32 144.8 368 32.3
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 8.4e-32 142.9 378 30.7
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.1e-31 142.5 374 29.7
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.4e-31 142.1 376 31.9
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.4e-31 142.1 377 30.5
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.4e-31 142.1 363 30.9
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 3.2e-31 141.0 395 29.4
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 4.2e-31 140.6 364 30.5
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 5.5e-31 140.2 350 32.6
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 9.3e-31 139.4 365 30.1
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 9.3e-31 139.4 391 30.4
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 2.7e-30 137.9 360 30.3
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 7.9e-30 136.3 327 31.8
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 7.9e-30 136.3 373 31.1
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.0e-29 136.0 364 31.0
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.0e-29 136.0 362 30.7
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.0e-29 136.0 370 29.7
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.3e-29 135.6 310 32.9
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.3e-29 135.6 368 28.8
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.8e-29 135.2 376 30.3
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.0e-29 134.4 374 29.4
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 3.9e-29 134.0 392 28.8
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 3.9e-29 134.0 369 29.0
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 3.9e-29 134.0 361 31.0
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 2.5e-28 131.3 367 30.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.5e-28 131.3 361 30.2
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 4.3e-28 130.6 369 28.7
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 9.7e-28 129.4 367 29.7
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.6e-27 128.6 312 33.3
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 2.8e-27 127.9 374 29.1
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.7e-27 127.5 343 26.8
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.8e-27 127.1 371 30.2
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 6.3e-27 126.7 369 29.5
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 5.3e-26 123.6 328 30.5
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 9.0e-26 122.9 409 27.6
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.2e-25 122.5 247 34.4
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 2.6e-25 121.3 307 31.3
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 3.4e-25 120.9 415 28.4
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 4.5e-25 120.6 315 30.5
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 7.7e-25 119.8 240 32.5
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.3e-24 119.0 459 25.9
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.2e-24 118.2 154 40.9
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 2.2e-24 118.2 382 28.8
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.1e-23 115.9 360 29.4
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 2.5e-23 114.8 316 28.8
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 5.1e-21 107.1 280 27.5
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.7e-19 102.1 228 32.5
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 2.2e-19 101.7 252 31.7
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.4e-18 99.0 227 31.7
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 2.4e-18 98.2 222 31.5
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.5e-15 88.2 359 26.7
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 4.2e-15 87.4 159 37.1
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 9.4e-15 86.3 437 25.2
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 8.8e-13 79.7 187 29.9
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 2.4e-10 71.6 96 41.7
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.5e-09 68.9 190 26.8
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.5e-07 60.5 312 24.7


User provided reference genes

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