Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.3e-57 226.1 110 100.0
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 2.1e-47 192.2 115 82.6
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.4e-38 162.9 121 70.2
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.4e-35 152.9 115 70.4
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 2.4e-35 152.1 117 69.2
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 7.8e-34 147.1 117 65.8
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.0e-33 146.7 115 68.7
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 4.0e-30 134.8 116 62.1
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-29 132.9 116 61.2
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.4e-29 131.3 112 62.5
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.3e-28 129.8 112 56.2
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.7e-28 129.4 112 63.4
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.2e-28 129.0 112 55.4
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.2e-28 129.0 112 55.4
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 8.3e-28 127.1 111 62.2
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 8.3e-28 127.1 112 55.4
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 2.4e-27 125.6 111 61.3
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 3.2e-27 125.2 114 55.3
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 5.4e-27 124.4 110 62.7
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.2e-26 123.2 108 58.3
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.6e-26 122.9 111 61.3
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.6e-26 122.9 108 58.3
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 2.1e-26 122.5 108 57.4
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 2.1e-26 122.5 112 57.1
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 2.1e-26 122.5 107 60.7
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.5e-26 121.7 116 56.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 4.6e-26 121.3 112 59.8
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.0e-25 120.2 119 54.6
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.0e-25 120.2 113 53.1
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.3e-25 119.8 106 57.5
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 1.7e-25 119.4 112 56.2
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 5.1e-25 117.9 113 52.2
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 8.6e-25 117.1 110 53.6
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.1e-24 116.7 111 53.2
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.5e-24 115.5 113 53.1
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 3.3e-24 115.2 115 51.3
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 5.6e-24 114.4 111 50.5
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 9.5e-24 113.6 111 54.1
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.6e-23 111.7 111 55.9
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 8.1e-23 110.5 110 51.8
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.1e-22 110.2 114 50.9
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 2.4e-22 109.0 120 53.3
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 6.8e-22 107.5 107 50.5
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.5e-21 106.3 111 49.5
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.0e-21 105.9 107 50.5
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 3.4e-21 105.1 102 59.8
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 2.2e-20 102.4 106 61.3
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 2.9e-20 102.1 114 47.4
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 2.9e-20 102.1 101 59.4
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.4e-19 99.0 111 47.7
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.1e-19 98.2 119 46.2
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.2e-18 96.7 105 50.5
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.1e-18 95.9 108 46.3
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.1e-18 95.9 108 46.3
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.3e-17 93.2 112 43.8
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.3e-17 92.4 110 45.5
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.9e-17 91.7 109 45.0
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 3.9e-17 91.7 104 45.2
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.1e-16 90.1 101 49.5
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 3.3e-16 88.6 123 43.9
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 4.3e-16 88.2 111 42.3
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.6e-15 86.3 107 47.7
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 6.2e-15 84.3 106 46.2
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 8.1e-15 84.0 106 47.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.4e-14 83.2 108 42.6
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.4e-14 83.2 104 47.1
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 2.4e-14 82.4 113 41.6
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 2.4e-14 82.4 112 42.9
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 2.4e-14 82.4 120 40.8
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 2.4e-14 82.4 110 42.7
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 2.4e-14 82.4 116 40.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 5.2e-14 81.3 111 45.9
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 6.9e-14 80.9 111 45.9
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 9.0e-14 80.5 112 42.9
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 1.2e-13 80.1 111 41.4
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 2.6e-13 79.0 110 40.0
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.3e-12 76.6 114 39.5
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.3e-12 76.6 114 39.5
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.3e-12 76.6 114 39.5
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.7e-12 76.3 91 49.5
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 2.2e-12 75.9 115 41.7
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.2e-12 75.9 111 41.4
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 6.4e-12 74.3 74 52.7
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 6.4e-12 74.3 115 39.1
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 8.4e-12 73.9 103 40.8
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 8.4e-12 73.9 103 40.8
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 8.4e-12 73.9 108 37.0
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 1.4e-11 73.2 113 38.1
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 1.4e-11 73.2 123 35.8
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.9e-11 72.8 114 39.5
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.9e-11 72.8 111 41.4
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 2.4e-11 72.4 114 36.8
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.2e-11 72.0 104 40.4
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 3.2e-11 72.0 113 37.2
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 2.7e-10 68.9 107 42.1
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.5e-10 68.6 102 41.2
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 4.6e-10 68.2 110 38.2
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 7.8e-10 67.4 106 36.8
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.0e-09 67.0 107 39.3
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.3e-09 66.6 103 40.8
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.7e-09 66.2 107 40.2
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.7e-09 66.2 107 39.3
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 2.3e-09 65.9 109 33.0
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 3.9e-09 65.1 118 33.1
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 3.9e-09 65.1 102 35.3
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 8.7e-09 63.9 128 35.9
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 8.7e-09 63.9 107 36.4
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.7e-09 63.9 102 35.3
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 8.7e-09 63.9 131 34.4
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 8.7e-09 63.9 109 33.0
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 1.5e-08 63.2 111 36.9
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.5e-08 62.4 101 34.7
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.5e-08 62.4 103 38.8
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 3.3e-08 62.0 101 33.7
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 4.3e-08 61.6 123 33.3
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 4.3e-08 61.6 107 32.7
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 9.6e-08 60.5 111 27.9
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 1.3e-07 60.1 108 30.6
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 2.1e-07 59.3 111 26.1
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.6e-07 58.5 103 30.1
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 4.8e-07 58.2 106 36.8
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 4.8e-07 58.2 103 36.9
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 4.8e-07 58.2 100 39.0
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 4.8e-07 58.2 102 36.3
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.1e-06 57.0 104 35.6
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.1e-06 57.0 104 35.6
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 1.4e-06 56.6 107 31.8
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.4e-06 56.6 107 31.8
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.4e-06 55.8 103 37.9
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.1e-06 55.5 109 31.2
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 3.1e-06 55.5 109 31.2
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 5.3e-06 54.7 99 35.4
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 5.3e-06 54.7 102 37.3


User provided reference genes

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