Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g022780 Medicago truncatula HOM05D005739 ORTHO05D007740 9.3e-209 729.9 363 100.0
TPR.G7643 Trifolium pratense HOM05D005739 ORTHO05D007740 1.9e-185 652.5 361 89.8
Psat1g181440 Pisum sativum HOM05D005739 ORTHO05D007740 5.7e-182 641.0 361 87.8
Ca_00625_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 8.8e-175 617.1 363 86.5
Lj6g0027190 Lotus japonicus HOM05D005739 ORTHO05D007740 6.1e-160 567.8 370 77.3
arahy.Tifrunner.gnm1.ann1.GPHX1M Arachis hypogaea HOM05D005739 ORTHO05D007740 2.6e-150 535.8 366 74.0
arahy.Tifrunner.gnm1.ann1.HAY2RB Arachis hypogaea HOM05D005739 ORTHO05D007740 2.6e-150 535.8 366 74.0
Glyma.13G206500 Glycine max HOM05D005739 ORTHO05D007740 1.7e-149 533.1 356 75.3
Lalb_Chr20g0118561 Lupinus albus HOM05D005739 ORTHO05D007740 1.7e-149 533.1 367 74.7
Glyma.15G106200 Glycine max HOM05D005739 ORTHO05D007740 2.4e-148 529.3 356 75.0
TPR.G37091 Trifolium pratense HOM05D005739 ORTHO05D007740 9.1e-148 527.3 366 72.1
VMungo0540G2038 Vigna mungo HOM05D005739 ORTHO05D007740 1.2e-147 526.9 355 74.9
Phvul.006G151100 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 2.9e-146 522.3 355 75.5
Ca_21095_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 3.8e-146 521.9 368 71.7
Ca_30203_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 3.8e-146 521.9 368 71.7
Psat4g007680 Pisum sativum HOM05D005739 ORTHO05D007740 9.5e-145 517.3 367 70.8
Glyma.07G258900 Glycine max HOM05D005739 ORTHO05D007740 3.6e-144 515.4 364 70.3
VMungo1215G0361 Vigna mungo HOM05D005739 ORTHO05D007740 6.1e-144 514.6 366 70.5
Phvul.003G077000 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 1.0e-143 513.8 366 70.2
Atru.chr10.2176 Acer truncatum HOM05D005739 ORTHO05D007740 1.6e-139 500.0 361 69.3
COL.COLO4_31742 Corchorus olitorius HOM05D005739 ORTHO05D007740 9.5e-137 490.7 359 69.1
TWI38G1065 Tripterygium wilfordii HOM05D005739 ORTHO05D007740 6.1e-136 488.0 366 67.8
QL05p074082 Quercus lobata HOM05D005739 ORTHO05D007740 1.8e-135 486.5 363 68.3
Ciclev10015698m.g Citrus clementina HOM05D005739 ORTHO05D007740 3.0e-135 485.7 364 67.6
GSVIVG01012654001 Vitis vinifera HOM05D005739 ORTHO05D007740 3.4e-134 482.3 360 66.9
Cfa000251 Carpinus fangiana HOM05D005739 ORTHO05D007740 1.3e-133 480.3 364 67.3
Gohir.D06G153000 Gossypium hirsutum HOM05D005739 ORTHO05D007740 1.7e-133 479.9 362 66.9
Potri.011G000100 Populus trichocarpa HOM05D005739 ORTHO05D007740 1.7e-133 479.9 364 66.5
Duzib235G0413 Durio zibethinus HOM05D005739 ORTHO05D007740 2.2e-133 479.6 362 66.9
RcHm_v2.0_Chr5g0003721 Rosa chinensis HOM05D005739 ORTHO05D007740 2.9e-133 479.2 366 66.9
Thecc.06G217300 Theobroma cacao HOM05D005739 ORTHO05D007740 2.9e-133 479.2 362 67.4
Gorai.010G179000 Gossypium raimondii HOM05D005739 ORTHO05D007740 4.9e-133 478.4 362 66.9
MD10G1317700 Malus domestica HOM05D005739 ORTHO05D007740 1.1e-132 477.2 366 66.1
FvH4_3g02490 Fragaria vesca HOM05D005739 ORTHO05D007740 3.2e-132 475.7 366 66.7
Dinv13869 Davidia involucrata HOM05D005739 ORTHO05D007740 7.0e-132 474.6 363 67.5
Sabra11G0000600 Salix brachista HOM05D005739 ORTHO05D007740 9.2e-132 474.2 364 67.0
FAN25G0806 Fragaria x ananassa HOM05D005739 ORTHO05D007740 2.7e-131 472.6 362 66.3
TAR627G1089 Trochodendron aralioides HOM05D005739 ORTHO05D007740 1.0e-130 470.7 362 67.4
Hma1.2p1_0813F.1_g222580 Hydrangea macrophylla HOM05D005739 ORTHO05D007740 3.0e-130 469.2 364 65.1
DCAR_008137 Daucus carota HOM05D005739 ORTHO05D007740 4.3e-129 465.3 365 63.8
PSO832G4144 Papaver somniferum HOM05D005739 ORTHO05D007740 4.3e-129 465.3 366 65.8
CsaV3_6G049150 Cucumis sativus L. HOM05D005739 ORTHO05D007740 1.2e-128 463.8 364 64.0
Actinidia11847 Actinidia chinensis HOM05D005739 ORTHO05D007740 1.6e-128 463.4 367 64.3
EL10Ac8g20019 Beta vulgaris HOM05D005739 ORTHO05D007740 1.6e-128 463.4 365 64.7
Nn1g03584 Nelumbo nucifera HOM05D005739 ORTHO05D007740 1.6e-128 463.4 359 65.2
MELO3C007380.2 Cucumis melo HOM05D005739 ORTHO05D007740 1.8e-127 459.9 364 63.2
CSS0045804 Camellia sinensis var. sinensis HOM05D005739 ORTHO05D007740 2.3e-127 459.5 367 63.5
Lsat_1_v5_gn_4_60101 Lactuca sativa HOM05D005739 ORTHO05D007740 3.1e-127 459.1 342 67.5
Medtr4g131840 Medicago truncatula HOM05D005739 ORTHO05D007740 3.1e-127 459.1 341 68.6
PGR004G1404 Punica granatum HOM05D005739 ORTHO05D007740 5.2e-127 458.4 366 63.4
PSO210G3635 Papaver somniferum HOM05D005739 ORTHO05D007740 7.5e-126 454.5 362 65.2
CARHR252690 Cardamine hirsuta HOM05D005739 ORTHO05D007740 9.8e-126 454.1 353 64.6
AL6G48370 Arabidopsis lyrata HOM05D005739 ORTHO05D007740 1.7e-125 453.4 353 65.2
Carub.0006s3279 Capsella rubella HOM05D005739 ORTHO05D007740 2.2e-125 453.0 353 64.6
Cc09_g01940 Coffea canephora HOM05D005739 ORTHO05D007740 2.2e-125 453.0 359 63.8
HanXRQChr16g0515931 Helianthus annuus HOM05D005739 ORTHO05D007740 2.2e-125 453.0 357 64.7
ECA234G0122 Erigeron canadensis HOM05D005739 ORTHO05D007740 2.9e-125 452.6 359 64.3
BcaC04g21334 Brassica carinata HOM05D005739 ORTHO05D007740 1.1e-124 450.7 353 63.5
BolC9t56140H Brassica oleracea HOM05D005739 ORTHO05D007740 1.1e-124 450.7 353 63.5
Eucgr.D01304 Eucalyptus grandis HOM05D005739 ORTHO05D007740 1.2e-123 447.2 356 62.6
PGSC0003DMG400011257 Solanum tuberosum HOM05D005739 ORTHO05D007740 1.2e-123 447.2 366 62.3
A09p26050 Brassica napus HOM05D005739 ORTHO05D007740 1.6e-123 446.8 353 63.2
Rhsim02G0110500 Rhododendron simsii HOM05D005739 ORTHO05D007740 1.6e-123 446.8 386 60.1
SalBow8G1417 Salvia bowleyana HOM05D005739 ORTHO05D007740 1.6e-123 446.8 363 62.3
AT4G04880 Arabidopsis thaliana HOM05D005739 ORTHO05D007740 1.3e-122 443.7 353 63.7
BraA09t38171Z Brassica rapa HOM05D005739 ORTHO05D007740 1.3e-122 443.7 353 62.9
Solyc10g005310.3 Solanum lycopersicum HOM05D005739 ORTHO05D007740 1.3e-122 443.7 366 61.7
ATR0752G010 Amborella trichopoda HOM05D005739 ORTHO05D007740 3.0e-122 442.6 367 61.3
CDE11G0579 Ceratophyllum demersum HOM05D005739 ORTHO05D007740 3.9e-122 442.2 359 62.7
vmacro15817 Vaccinium macrocarpon HOM05D005739 ORTHO05D007740 3.9e-122 442.2 383 60.3
MSTRG.15974 Avicennia marina HOM05D005739 ORTHO05D007740 6.6e-122 441.4 357 61.9
Migut.M01296 Erythranthe guttata HOM05D005739 ORTHO05D007740 8.6e-122 441.0 356 63.5
Thhalv10028765m.g Eutrema salsugineum HOM05D005739 ORTHO05D007740 1.9e-121 439.9 354 63.8
Peaxi162Scf00203g01110 Petunia axillaris HOM05D005739 ORTHO05D007740 1.9e-121 439.9 359 61.8
Sed0020639 Sechium edule HOM05D005739 ORTHO05D007740 1.9e-121 439.9 361 61.8
Haze_06773 Corylus avellana HOM05D005739 ORTHO05D007740 5.6e-121 438.3 323 70.0
Sp6g04100 Schrenkiella parvula HOM05D005739 ORTHO05D007740 1.2e-120 437.2 353 62.3
Cpa.g.sc198.24 Carica papaya HOM05D005739 ORTHO05D007740 1.6e-120 436.8 340 67.4
Oeu063902.1 Olea europaea HOM05D005739 ORTHO05D007740 1.1e-119 434.1 355 61.7
Gohir.A06G147200 Gossypium hirsutum HOM05D005739 ORTHO05D007740 1.8e-119 433.3 336 65.8
Sed0022137 Sechium edule HOM05D005739 ORTHO05D007740 2.3e-119 433.0 354 61.6
ClCG01G022090 Citrullus lanatus HOM05D005739 ORTHO05D007740 5.2e-119 431.8 364 61.0
Nitab4.5_0007448g0040 Nicotiana tabacum HOM05D005739 ORTHO05D007740 3.4e-118 429.1 346 63.6
Lj1C1227G9 Lonicera japonica HOM05D005739 ORTHO05D007740 4.4e-118 428.7 365 62.5
HPP92_016316 Vanilla planifolia HOM05D005739 ORTHO05D007740 4.4e-118 428.7 362 59.7
SGA_v2.0_scaffold4G01929 Striga asiatica HOM05D005739 ORTHO05D007740 9.9e-118 427.6 369 60.7
Aa31LG9G9620 Aethionema arabicum HOM05D005739 ORTHO05D007740 3.7e-117 425.6 365 59.7
Ah.14g088100 Amaranthus hybridus HOM05D005739 ORTHO05D007740 4.9e-117 425.2 443 53.5
C09p33050 Brassica napus HOM05D005739 ORTHO05D007740 6.4e-117 424.9 319 66.1
BcaB01g01842 Brassica carinata HOM05D005739 ORTHO05D007740 8.3e-117 424.5 353 60.9
Manes.16G010200 Manihot esculenta HOM05D005739 ORTHO05D007740 4.1e-116 422.2 320 65.6
AUR62012674 Chenopodium quinoa HOM05D005739 ORTHO05D007740 7.3e-113 411.4 363 62.0
THA.LOC104812968 Tarenaya hassleriana HOM05D005739 ORTHO05D007740 7.3e-113 411.4 339 62.5
SEGI_12484 Sequoiadendron giganteum HOM05D005739 ORTHO05D007740 1.4e-111 407.1 351 58.1
Zm00001eb110820 Zea mays HOM05D005739 ORTHO05D007740 3.1e-111 406.0 364 55.5
MBI18_g35070_MAGBIO Magnolia biondii HOM05D005739 ORTHO05D007740 3.4e-110 402.5 308 66.6
Os07g0661000 Oryza sativa ssp. japonica HOM05D005739 ORTHO05D007740 2.9e-109 399.4 359 55.2
CANSAT56G1696 Cannabis sativa HOM05D005739 ORTHO05D007740 1.2e-107 394.0 290 68.3
AUR62021982 Chenopodium quinoa HOM05D005739 ORTHO05D007740 2.7e-107 392.9 427 52.7
Nitab4.5_0002155g0060 Nicotiana tabacum HOM05D005739 ORTHO05D007740 1.1e-105 387.5 406 52.7
CiPaw.10G069300 Carya illinoinensis HOM05D005739 ORTHO05D007740 1.6e-104 383.6 287 69.0
Sc06g0010750 Simmondsia chinensis HOM05D005739 ORTHO05D007740 1.2e-102 377.5 290 66.2
HPP92_016297 Vanilla planifolia HOM05D005739 ORTHO05D007740 1.2e-99 367.5 362 54.4
unitig_92.g28118 Utricularia gibba HOM05D005739 ORTHO05D007740 2.5e-97 359.8 309 57.9
Dinv17816 Davidia involucrata HOM05D005739 ORTHO05D007740 3.3e-97 359.4 275 69.8
Prupe.4G024100 Prunus persica HOM05D005739 ORTHO05D007740 5.6e-97 358.6 278 67.3
SMO343G0036 Selaginella moellendorffii HOM05D005739 ORTHO05D007740 8.1e-96 354.8 357 52.7
Dinv20033 Davidia involucrata HOM05D005739 ORTHO05D007740 1.4e-92 344.0 300 62.7
Mapoly0023s0135 Marchantia polymorpha HOM05D005739 ORTHO05D007740 1.6e-91 340.5 347 51.6
Hund23487 Selenicereus undatus HOM05D005739 ORTHO05D007740 3.4e-86 322.8 335 54.6
AagrBONN_evm.TU.Sc2ySwM_368.535 Anthoceros agrestis HOM05D005739 ORTHO05D007740 8.4e-85 318.2 355 48.7
CAN.G105.13 Capsicum annuum HOM05D005739 ORTHO05D007740 7.9e-83 311.6 266 59.0
Sopen10g001300 Solanum pennellii HOM05D005739 ORTHO05D007740 5.1e-82 308.9 259 59.5
Aqoxy1G03635 Aquilegia oxysepala HOM05D005739 ORTHO05D007740 2.8e-80 303.1 263 59.7
Pp3c11_7970 Physcomitrium patens HOM05D005739 ORTHO05D007740 3.5e-75 286.2 306 48.4
arahy.Tifrunner.gnm1.ann1.H0U1UD Arachis hypogaea HOM05D005739 ORTHO05D007740 1.5e-65 254.2 358 46.9
Cre03.g161000 Chlamydomonas reinhardtii HOM05D005739 ORTHO05D007740 9.7e-65 251.5 448 36.6
arahy.Tifrunner.gnm1.ann1.FSQL8E Arachis hypogaea HOM05D005739 ORTHO05D007740 7.9e-59 231.9 270 53.3
arahy.Tifrunner.gnm1.ann1.53BRPK Arachis hypogaea HOM05D005739 ORTHO05D007740 2.3e-58 230.3 178 69.7
arahy.Tifrunner.gnm1.ann1.KZ0328 Arachis hypogaea HOM05D005739 ORTHO05D007740 1.4e-55 221.1 242 55.0
MCO11G903 Micromonas commoda HOM05D005739 ORTHO05D007740 6.5e-53 212.2 353 40.2
arahy.Tifrunner.gnm1.ann1.7V36PE Arachis hypogaea HOM05D005739 ORTHO05D007740 2.5e-52 210.3 211 57.8
arahy.Tifrunner.gnm1.ann1.Q9UH73 Arachis hypogaea HOM05D005739 ORTHO05D007740 9.4e-52 208.4 358 40.2
arahy.Tifrunner.gnm1.ann1.0E5R4V Arachis hypogaea HOM05D005739 ORTHO05D007740 8.0e-51 205.3 182 63.7
arahy.Tifrunner.gnm1.ann1.B9PES8 Arachis hypogaea HOM05D005739 ORTHO05D007740 2.3e-50 203.8 182 63.2
arahy.Tifrunner.gnm1.ann1.AD56MI Arachis hypogaea HOM05D005739 ORTHO05D083983 2.5e-44 183.7 243 48.6
CANSAT64G1767 Cannabis sativa HOM05D005739 ORTHO05D033954 2.6e-33 147.1 113 60.2
CANSAT56G0563 Cannabis sativa HOM05D005739 ORTHO05D113818 5.4e-23 112.8 126 48.4
arahy.Tifrunner.gnm1.ann1.39644B Arachis hypogaea HOM05D005739 ORTHO05D007740 7.8e-22 109.0 200 39.5
RcHm_v2.0_Chr5g0051251 Rosa chinensis HOM05D005739 ORTHO05D033954 5.4e-15 86.3 63 60.3
SEGI_28449 Sequoiadendron giganteum HOM05D005739 ORTHO05D033954 1.3e-13 81.6 64 57.8
arahy.Tifrunner.gnm1.ann1.3ZZ8UM Arachis hypogaea HOM05D000187 ORTHO05D000230 6.2e-11 72.8 50 74.0
Nn1g07096 Nelumbo nucifera HOM05D005739 ORTHO05D007740 2.7e-06 57.4 88 39.8
arahy.Tifrunner.gnm1.ann1.ZUJ3H1 Arachis hypogaea HOM05D005739 ORTHO05D083715 6.0e-06 56.2 39 69.2


User provided reference genes

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