Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g020160 Medicago truncatula HOM05D006883 ORTHO05D008624 2.9e-235 818.1 413 100.0
Psat1g187280 Pisum sativum HOM05D006883 ORTHO05D008624 1.2e-207 726.5 423 88.4
Ca_00572_v3 Cicer arietinum L. HOM05D006883 ORTHO05D008624 1.4e-205 719.5 423 87.7
TPR.G1530 Trifolium pratense HOM05D006883 ORTHO05D008624 1.5e-199 699.5 433 85.0
Glyma.15G097700 Glycine max HOM05D006883 ORTHO05D008624 8.4e-190 667.2 417 81.5
LjContig00389g0025618 Lotus japonicus HOM05D006883 ORTHO05D008624 1.9e-189 666.0 415 81.4
Glyma.13G215400 Glycine max HOM05D006883 ORTHO05D008624 1.3e-187 659.8 417 80.6
Lalb_Chr18g0055701 Lupinus albus HOM05D006883 ORTHO05D008624 2.3e-187 659.1 418 80.6
arahy.Tifrunner.gnm1.ann1.WI0ZBZ Arachis hypogaea HOM05D006883 ORTHO05D008624 3.9e-187 658.3 420 80.5
arahy.Tifrunner.gnm1.ann1.GN2N7N Arachis hypogaea HOM05D006883 ORTHO05D008624 7.4e-186 654.1 420 79.8
Phvul.006G161600 Phaseolus vulgaris HOM05D006883 ORTHO05D008624 7.4e-186 654.1 417 81.1
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 1.5e-183 646.4 418 78.7
QL06p007513 Quercus lobata HOM05D006883 ORTHO05D008624 2.5e-173 612.5 425 75.1
Gorai.011G186200 Gossypium raimondii HOM05D006883 ORTHO05D008624 7.2e-173 610.9 417 75.8
Gohir.A10G101275 Gossypium hirsutum HOM05D006883 ORTHO05D008624 3.5e-172 608.6 417 75.1
Aqoxy2G03105 Aquilegia oxysepala HOM05D006883 ORTHO05D008624 5.1e-171 604.7 422 72.7
Cfa015347 Carpinus fangiana HOM05D006883 ORTHO05D008624 6.7e-171 604.4 426 73.7
Haze_01264 Corylus avellana HOM05D006883 ORTHO05D008624 8.7e-171 604.0 426 73.7
Manes.15G016500 Manihot esculenta HOM05D006883 ORTHO05D008624 1.5e-170 603.2 426 73.2
CAN.G556.8 Capsicum annuum HOM05D006883 ORTHO05D008624 5.7e-170 601.3 421 73.6
CANSAT78G0922 Cannabis sativa HOM05D006883 ORTHO05D008624 7.4e-170 600.9 425 74.8
FAN17G0491 Fragaria x ananassa HOM05D006883 ORTHO05D008624 1.6e-169 599.7 427 72.8
FvH4_4g17240 Fragaria vesca HOM05D006883 ORTHO05D008624 2.2e-169 599.4 427 72.6
FAN12G0993 Fragaria x ananassa HOM05D006883 ORTHO05D008624 2.2e-169 599.4 427 72.6
FAN12G3260 Fragaria x ananassa HOM05D006883 ORTHO05D008624 2.2e-169 599.4 427 72.6
Rhsim04G0216600 Rhododendron simsii HOM05D006883 ORTHO05D008624 2.8e-169 599.0 426 72.8
Sopen01g029090 Solanum pennellii HOM05D006883 ORTHO05D008624 4.8e-169 598.2 412 74.5
FAN22G2222 Fragaria x ananassa HOM05D006883 ORTHO05D008624 6.3e-169 597.8 427 72.1
Lj6P670T41 Lonicera japonica HOM05D006883 ORTHO05D008624 8.2e-169 597.4 406 74.6
Ciclev10005043m.g Citrus clementina HOM05D006883 ORTHO05D008624 1.1e-168 597.0 425 73.9
RcHm_v2.0_Chr4g0421151 Rosa chinensis HOM05D006883 ORTHO05D008624 1.8e-168 596.3 426 72.1
Eucgr.H03771 Eucalyptus grandis HOM05D006883 ORTHO05D008624 3.1e-168 595.5 422 72.3
Prupe.1G141800 Prunus persica HOM05D006883 ORTHO05D008624 1.2e-167 593.6 426 70.4
CiPaw.02G086300 Carya illinoinensis HOM05D006883 ORTHO05D008624 2.0e-167 592.8 425 72.9
Thecc.04G278100 Theobroma cacao HOM05D006883 ORTHO05D008624 2.0e-167 592.8 419 72.8
COL.COLO4_13924 Corchorus olitorius HOM05D006883 ORTHO05D008624 2.6e-167 592.4 420 73.3
Nitab4.5_0000829g0010 Nicotiana tabacum HOM05D006883 ORTHO05D008624 3.4e-167 592.0 404 75.2
PGSC0003DMG400022678 Solanum tuberosum HOM05D006883 ORTHO05D008624 4.5e-167 591.7 426 72.8
MD13G1173600 Malus domestica HOM05D006883 ORTHO05D008624 1.0e-166 590.5 427 71.7
Nitab4.5_0002986g0100 Nicotiana tabacum HOM05D006883 ORTHO05D008624 1.0e-166 590.5 404 75.0
Sabra08G0157100 Salix brachista HOM05D006883 ORTHO05D008624 1.0e-166 590.5 421 72.2
Duzib052G0675 Durio zibethinus HOM05D006883 ORTHO05D008624 1.7e-166 589.7 420 71.7
CSS0008645 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 2.2e-166 589.3 421 72.0
vmacro08200 Vaccinium macrocarpon HOM05D006883 ORTHO05D008624 2.2e-166 589.3 422 72.3
PSO210G3900 Papaver somniferum HOM05D006883 ORTHO05D008624 2.5e-165 585.9 413 71.4
Potri.008G204900 Populus trichocarpa HOM05D006883 ORTHO05D008624 2.5e-165 585.9 421 70.8
Peaxi162Scf00386g00096 Petunia axillaris HOM05D006883 ORTHO05D008624 3.2e-165 585.5 382 77.2
PSO170G0113 Papaver somniferum HOM05D006883 ORTHO05D008624 4.2e-165 585.1 414 71.3
TWI53G0676 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 7.2e-165 584.3 422 71.6
TWI53G1857 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 9.4e-165 583.9 422 71.3
Cc03_g02320 Coffea canephora HOM05D006883 ORTHO05D008624 2.7e-164 582.4 405 74.1
PGR004G1631 Punica granatum HOM05D006883 ORTHO05D008624 2.7e-164 582.4 388 75.0
TAR633G1607 Trochodendron aralioides HOM05D006883 ORTHO05D008624 3.6e-164 582.0 423 70.7
AT5G18660 Arabidopsis thaliana HOM05D006883 ORTHO05D008624 7.9e-164 580.9 422 70.6
Carub.0006s1695 Capsella rubella HOM05D006883 ORTHO05D008624 7.9e-164 580.9 422 71.1
Actinidia23426 Actinidia chinensis HOM05D006883 ORTHO05D008624 1.4e-163 580.1 369 78.0
AL6G29930 Arabidopsis lyrata HOM05D006883 ORTHO05D008624 1.8e-163 579.7 422 70.1
DCAR_030562 Daucus carota HOM05D006883 ORTHO05D008624 2.3e-163 579.3 422 71.8
Sed0024317 Sechium edule HOM05D006883 ORTHO05D008624 3.0e-163 578.9 392 75.0
THA.LOC104802726 Tarenaya hassleriana HOM05D006883 ORTHO05D008624 3.0e-163 578.9 420 70.5
CDE11G0693 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 3.9e-163 578.6 371 77.9
Ah.06g192160 Amaranthus hybridus HOM05D006883 ORTHO05D008624 5.1e-163 578.2 385 75.6
Actinidia40226 Actinidia chinensis HOM05D006883 ORTHO05D008624 2.0e-162 576.2 369 77.5
Aa31LG11G10960 Aethionema arabicum HOM05D006883 ORTHO05D008624 7.4e-162 574.3 417 71.5
AUR62041764 Chenopodium quinoa HOM05D006883 ORTHO05D008624 9.7e-162 573.9 371 78.2
Nn4g26002 Nelumbo nucifera HOM05D006883 ORTHO05D008624 1.7e-161 573.2 369 77.2
CsaV3_3G014130 Cucumis sativus L. HOM05D006883 ORTHO05D008624 2.2e-161 572.8 421 70.5
BcaC04g18657 Brassica carinata HOM05D006883 ORTHO05D008624 8.2e-161 570.9 377 74.8
BolC9t58650H Brassica oleracea HOM05D006883 ORTHO05D008624 8.2e-161 570.9 377 74.8
AUR62041032 Chenopodium quinoa HOM05D006883 ORTHO05D008624 8.2e-161 570.9 361 79.2
Thhalv10013668m.g Eutrema salsugineum HOM05D006883 ORTHO05D008624 8.2e-161 570.9 415 70.1
ECA246G3623 Erigeron canadensis HOM05D006883 ORTHO05D008624 1.4e-160 570.1 412 71.6
Lsat_1_v5_gn_3_24840 Lactuca sativa HOM05D006883 ORTHO05D008624 1.4e-160 570.1 403 72.7
Sp6g25680 Schrenkiella parvula HOM05D006883 ORTHO05D008624 1.4e-160 570.1 418 69.6
Sc25g0004770 Simmondsia chinensis HOM05D006883 ORTHO05D008624 1.4e-160 570.1 378 75.4
CARHR194360 Cardamine hirsuta HOM05D006883 ORTHO05D008624 3.1e-160 568.9 422 69.9
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 5.3e-160 568.2 417 71.9
HanXRQChr08g0208101 Helianthus annuus HOM05D006883 ORTHO05D008624 1.5e-159 566.6 409 71.1
Oeu044787.1 Olea europaea HOM05D006883 ORTHO05D008624 1.5e-159 566.6 414 70.5
Atru.BG.87.p Acer truncatum HOM05D006883 ORTHO05D008624 2.0e-159 566.2 349 81.7
MSTRG.10057 Avicennia marina HOM05D006883 ORTHO05D008624 2.9e-158 562.4 395 71.9
SalBow2G1088 Salvia bowleyana HOM05D006883 ORTHO05D008624 2.9e-158 562.4 405 70.4
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 1.4e-157 560.1 370 74.3
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 1.9e-157 559.7 419 69.0
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 3.2e-157 558.9 401 70.1
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 7.2e-157 557.8 417 68.3
Migut.G00206 Erythranthe guttata HOM05D006883 ORTHO05D008624 7.2e-157 557.8 427 67.9
Dinv38322 Davidia involucrata HOM05D006883 ORTHO05D008624 1.0e-155 553.9 408 70.8
unitig_748.g8372 Utricularia gibba HOM05D006883 ORTHO05D008624 2.6e-154 549.3 371 73.3
MBI19_g30852_MAGBIO Magnolia biondii HOM05D006883 ORTHO05D008624 2.2e-153 546.2 346 77.7
ATR0706G234 Amborella trichopoda HOM05D006883 ORTHO05D008624 2.6e-151 539.3 379 71.0
EL10Ac4g09099 Beta vulgaris HOM05D006883 ORTHO05D008624 2.6e-151 539.3 406 69.7
CDE02G1591 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 5.7e-146 521.5 355 73.2
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 6.3e-145 518.1 359 71.3
CSS0011936 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 8.2e-145 517.7 351 70.9
SGA_v2.0_scaffold973G53763 Striga asiatica HOM05D006883 ORTHO05D008624 1.4e-144 516.9 407 67.3
CSS0009780 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 3.1e-144 515.8 351 70.7
HPP92_006930 Vanilla planifolia HOM05D006883 ORTHO05D008624 1.2e-140 503.8 345 69.9
Mapoly0058s0049 Marchantia polymorpha HOM05D006883 ORTHO05D008624 4.4e-138 495.4 348 69.3
AagrBONN_evm.TU.Sc2ySwM_369.460 Anthoceros agrestis HOM05D006883 ORTHO05D008624 2.8e-137 492.7 356 68.5
Pp3c7_3620 Physcomitrium patens HOM05D006883 ORTHO05D008624 2.4e-136 489.6 408 61.5
Zm00001eb016830 Zea mays HOM05D006883 ORTHO05D008624 1.2e-132 477.2 343 68.5
Os03g0351200 Oryza sativa ssp. japonica HOM05D006883 ORTHO05D008624 1.8e-131 473.4 388 62.1
CBR_g77624 Chara braunii HOM05D006883 ORTHO05D008624 3.1e-128 462.6 342 66.7
Gohir.D10G166900 Gossypium hirsutum HOM05D006883 ORTHO05D008624 5.0e-126 455.3 254 87.8
Cre01.g042800 Chlamydomonas reinhardtii HOM05D006883 ORTHO05D008624 3.7e-113 412.5 343 60.1
SMO174G0102 Selaginella moellendorffii HOM05D006883 ORTHO05D008624 2.4e-112 409.8 341 61.6
Cpa.g.sc1008.1 Carica papaya HOM05D006883 ORTHO05D008624 2.7e-111 406.4 322 68.0
MCO03G528 Micromonas commoda HOM05D006883 ORTHO05D008624 3.3e-109 399.4 344 59.6
MELO3C006606.2 Cucumis melo HOM05D006883 ORTHO05D008624 7.3e-101 371.7 222 82.0
DCAR_030560 Daucus carota HOM05D006883 ORTHO05D008624 7.3e-101 371.7 233 78.5
Solyc01g067290.3 Solanum lycopersicum HOM05D006883 ORTHO05D008624 1.9e-93 347.1 192 87.0
DCAR_030558 Daucus carota HOM05D006883 ORTHO05D008624 1.5e-90 337.4 192 82.8
PRCOL_00006445 Prasinoderma coloniale HOM05D006883 ORTHO05D008624 5.5e-72 275.8 349 43.0
Oeu061954.1 Olea europaea HOM05D006883 ORTHO05D008624 1.5e-32 144.8 121 62.0
Migut.M00184 Erythranthe guttata HOM05D006883 ORTHO05D008624 8.0e-15 85.9 133 42.9
GSVIVG01017797001 Vitis vinifera HOM05D006883 ORTHO05D008624 8.0e-15 85.9 84 54.8
Cre02.g142146 Chlamydomonas reinhardtii HOM05D006026 ORTHO05D007502 1.7e-09 68.2 362 22.9
Pp3c15_7750 Physcomitrium patens HOM05D005785 ORTHO05D007017 5.0e-09 66.6 237 27.0
CBR_g37527 Chara braunii HOM05D006026 ORTHO05D007502 6.6e-09 66.2 363 22.9
Glyma.11G070200 Glycine max HOM05D000342 ORTHO05D000217 6.6e-09 66.2 240 25.4
Glyma.01G172900 Glycine max HOM05D000342 ORTHO05D000217 8.6e-09 65.9 240 25.4
AagrBONN_evm.TU.Sc2ySwM_228.3661 Anthoceros agrestis HOM05D006026 ORTHO05D007502 1.5e-08 65.1 331 21.8
MCO09G679 Micromonas commoda HOM05D006026 ORTHO05D007502 3.3e-08 63.9 329 23.1
Aqoxy6G00992 Aquilegia oxysepala HOM05D005785 ORTHO05D007962 9.5e-08 62.4 234 25.6
Phvul.009G116200 Phaseolus vulgaris HOM05D006026 ORTHO05D007502 9.5e-08 62.4 395 21.8
Lj5A173T64 Lonicera japonica HOM05D006026 ORTHO05D007502 1.2e-07 62.0 332 21.7
Peaxi162Scf00362g00257 Petunia axillaris HOM05D006026 ORTHO05D007502 1.2e-07 62.0 335 20.9
Atru.chr5.3501 Acer truncatum HOM05D006026 ORTHO05D007502 2.1e-07 61.2 332 20.8
FvH4_2g16360 Fragaria vesca HOM05D006026 ORTHO05D007502 2.1e-07 61.2 332 21.7
FAN24G0545 Fragaria x ananassa HOM05D006026 ORTHO05D007502 2.1e-07 61.2 332 21.7
FAN24G2355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 2.1e-07 61.2 332 21.7
Thecc.02G047100 Theobroma cacao HOM05D006026 ORTHO05D007502 2.1e-07 61.2 332 22.3
Zm00001eb038110 Zea mays HOM05D005455 ORTHO05D007017 2.1e-07 61.2 271 27.3
FAN15G0892 Fragaria x ananassa HOM05D006026 ORTHO05D007502 2.8e-07 60.8 332 21.7
FAN27G0355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 2.8e-07 60.8 332 21.7
RcHm_v2.0_Chr6g0280111 Rosa chinensis HOM05D006026 ORTHO05D007502 2.8e-07 60.8 332 21.7
Nn6g31746 Nelumbo nucifera HOM05D006026 ORTHO05D007502 3.6e-07 60.5 371 21.8
Nitab4.5_0000783g0230 Nicotiana tabacum HOM05D006026 ORTHO05D007502 3.6e-07 60.5 335 20.9
MSTRG.19950 Avicennia marina HOM05D006026 ORTHO05D007502 4.7e-07 60.1 332 21.4
Nitab4.5_0009888g0010 Nicotiana tabacum HOM05D006026 ORTHO05D007502 4.7e-07 60.1 335 20.9
PSO675G4706 Papaver somniferum HOM05D006026 ORTHO05D007502 4.7e-07 60.1 332 21.7
Gohir.A09G077900 Gossypium hirsutum HOM05D005455 ORTHO05D007017 6.1e-07 59.7 243 28.0
PSO541G6277 Papaver somniferum HOM05D006026 ORTHO05D007502 6.1e-07 59.7 332 21.7
SMO011G0028 Selaginella moellendorffii HOM05D006026 ORTHO05D007502 6.1e-07 59.7 260 23.5
Sopen01g054110 Solanum pennellii HOM05D006026 ORTHO05D007502 8.0e-07 59.3 335 20.9
CAN.G1235.18 Capsicum annuum HOM05D006026 ORTHO05D007502 1.0e-06 58.9 335 20.9
Glyma.04G001500 Glycine max HOM05D006026 ORTHO05D007502 1.0e-06 58.9 377 21.2
SMO146G0207 Selaginella moellendorffii HOM05D005785 ORTHO05D007962 1.0e-06 58.9 190 30.5
PGSC0003DMG400018657 Solanum tuberosum HOM05D006026 ORTHO05D007502 1.0e-06 58.9 335 20.6
VMungo1309G0279 Vigna mungo HOM05D006026 ORTHO05D007502 1.0e-06 58.9 345 22.6
Potri.011G079600 Populus trichocarpa HOM05D005455 ORTHO05D007017 1.4e-06 58.5 240 28.3
Sabra11G0070500 Salix brachista HOM05D005455 ORTHO05D007017 1.4e-06 58.5 219 26.9
SMO367G0010 Selaginella moellendorffii HOM05D000342 ORTHO05D000217 1.4e-06 58.5 249 27.7
SMO367G0547 Selaginella moellendorffii HOM05D000342 ORTHO05D000217 1.4e-06 58.5 249 27.7
SMO367G0760 Selaginella moellendorffii HOM05D000342 ORTHO05D000217 1.4e-06 58.5 249 27.7
Aqoxy6G01749 Aquilegia oxysepala HOM05D006026 ORTHO05D007502 1.8e-06 58.2 421 21.1
Cpa.g.sc20.183 Carica papaya HOM05D006026 ORTHO05D007502 1.8e-06 58.2 345 21.4
Os08g0553800 Oryza sativa ssp. japonica HOM05D006026 ORTHO05D007502 1.8e-06 58.2 345 21.4
CDE05G1234 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 2.3e-06 57.8 283 21.9
MD05G1131800 Malus domestica HOM05D006026 ORTHO05D007502 2.3e-06 57.8 332 21.1
Manes.15G147600 Manihot esculenta HOM05D005785 ORTHO05D007962 3.0e-06 57.4 246 26.0
Rhsim11G0172800 Rhododendron simsii HOM05D005785 ORTHO05D007962 3.0e-06 57.4 202 30.7
Sabra04G0123100 Salix brachista HOM05D006026 ORTHO05D007502 3.0e-06 57.4 332 21.4
Actinidia18011 Actinidia chinensis HOM05D006026 ORTHO05D007502 4.0e-06 57.0 332 21.4
CAN.G1.48 Capsicum annuum HOM05D005785 ORTHO05D007962 4.0e-06 57.0 186 27.4
COL.COLO4_17947 Corchorus olitorius HOM05D006026 ORTHO05D007502 4.0e-06 57.0 332 21.1
Gohir.D09G078100 Gossypium hirsutum HOM05D005455 ORTHO05D007017 4.0e-06 57.0 244 27.0
Thecc.06G152800 Theobroma cacao HOM05D005455 ORTHO05D007017 4.0e-06 57.0 183 27.3
TAR376G0854 Trochodendron aralioides HOM05D006026 ORTHO05D007502 4.0e-06 57.0 332 20.8
Gorai.006G093300 Gossypium raimondii HOM05D005455 ORTHO05D007017 5.2e-06 56.6 244 27.0
MD05G1286400 Malus domestica HOM05D005455 ORTHO05D007017 5.2e-06 56.6 173 27.7
Manes.04G065300 Manihot esculenta HOM05D006026 ORTHO05D007502 5.2e-06 56.6 344 21.8
Potri.009G143000 Populus trichocarpa HOM05D006026 ORTHO05D007502 5.2e-06 56.6 332 20.8
HPP92_023862 Vanilla planifolia HOM05D005455 ORTHO05D007017 5.2e-06 56.6 138 29.7
CBR_g23485 Chara braunii HOM05D005785 ORTHO05D007962 6.8e-06 56.2 123 30.1
Dinv41889 Davidia involucrata HOM05D006026 ORTHO05D007502 6.8e-06 56.2 332 21.1
Glyma.01G172800 Glycine max HOM05D000342 ORTHO05D000217 6.8e-06 56.2 229 24.5
Pp3c27_8140 Physcomitrium patens HOM05D006026 ORTHO05D007502 6.8e-06 56.2 263 22.1
TPR.G38515 Trifolium pratense HOM05D006026 ORTHO05D007502 6.8e-06 56.2 332 20.5
Zm00001eb039850 Zea mays HOM05D006026 ORTHO05D007502 6.8e-06 56.2 292 22.3
CARHR094330 Cardamine hirsuta HOM05D005785 ORTHO05D007962 8.9e-06 55.8 297 25.9
FvH4_3g05850 Fragaria vesca HOM05D005455 ORTHO05D007017 8.9e-06 55.8 244 24.2
PGR042G3337 Punica granatum HOM05D006026 ORTHO05D007502 8.9e-06 55.8 332 20.8
Sp4g16730 Schrenkiella parvula HOM05D005455 ORTHO05D007017 8.9e-06 55.8 237 29.1
THA.LOC104800353 Tarenaya hassleriana HOM05D005785 ORTHO05D007962 8.9e-06 55.8 204 27.5
TWI79G1086 Tripterygium wilfordii HOM05D006026 ORTHO05D007502 8.9e-06 55.8 333 21.0


User provided reference genes

Program Settings