Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 4.0e-282 974.2 509 100.0
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 5.6e-228 794.3 515 83.3
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 9.9e-225 783.5 510 82.7
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 1.9e-212 742.7 467 85.2
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 4.2e-199 698.4 515 74.6
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 2.3e-197 692.6 512 75.0
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 1.5e-188 663.3 514 72.2
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 2.6e-188 662.5 515 72.2
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 1.3e-163 580.5 523 64.4
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 4.1e-162 575.5 533 63.2
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 4.3e-143 512.3 508 56.9
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 7.3e-143 511.5 451 60.5
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 3.1e-141 506.1 501 59.1
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 4.0e-141 505.8 470 59.8
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 6.8e-141 505.0 508 57.1
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 1.5e-140 503.8 521 56.0
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 8.3e-139 498.0 523 56.6
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 4.6e-137 492.3 521 53.7
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 1.9e-135 486.9 461 58.1
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 3.6e-134 482.6 511 56.8
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 8.1e-134 481.5 408 64.2
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 3.1e-133 479.6 488 56.1
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 5.2e-133 478.8 485 57.5
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 6.8e-133 478.4 509 54.4
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 3.4e-132 476.1 489 57.5
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 3.7e-131 472.6 462 57.6
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 4.9e-131 472.2 525 54.7
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 6.4e-131 471.9 470 55.5
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 6.4e-131 471.9 451 59.0
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 1.6e-129 467.2 522 53.8
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 2.7e-129 466.5 445 57.8
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.0e-128 464.5 522 53.6
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 3.3e-127 459.5 418 59.3
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 2.8e-126 456.4 487 55.2
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 7.6e-124 448.4 518 51.9
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 9.9e-124 448.0 462 53.7
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 2.9e-123 446.4 442 56.6
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 1.1e-122 444.5 444 56.5
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 1.1e-122 444.5 500 53.2
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 1.9e-122 443.7 423 57.2
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 2.4e-122 443.4 452 56.4
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 3.2e-122 443.0 510 51.6
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 3.5e-121 439.5 433 56.6
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 1.0e-120 438.0 447 54.6
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 2.5e-119 433.3 539 50.6
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 5.6e-119 432.2 471 55.2
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 2.8e-118 429.9 511 49.5
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 2.8e-118 429.9 496 52.2
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 3.6e-118 429.5 507 50.7
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 8.1e-118 428.3 497 50.5
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.1e-117 427.9 472 52.8
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 3.1e-117 426.4 429 56.6
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 2.0e-116 423.7 508 51.2
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 1.7e-115 420.6 455 54.1
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 3.2e-114 416.4 500 50.0
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 5.4e-114 415.6 488 51.0
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 9.3e-114 414.8 466 52.1
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 2.7e-113 413.3 415 57.1
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 3.0e-112 409.8 507 50.7
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 3.9e-112 409.5 389 55.8
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 5.1e-112 409.1 433 54.5
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 1.5e-111 407.5 508 49.4
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 1.5e-111 407.5 372 59.4
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 4.3e-111 406.0 511 49.3
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 4.3e-111 406.0 451 53.0
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 9.6e-111 404.8 403 56.6
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.1e-110 403.7 507 50.3
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 2.8e-110 403.3 488 49.8
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 3.6e-110 402.9 330 67.0
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 6.2e-110 402.1 447 50.6
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 9.9e-108 394.8 503 48.9
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.3e-107 394.4 305 72.5
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 1.7e-107 394.0 307 67.4
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 2.2e-107 393.7 451 52.8
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 1.8e-104 384.0 451 48.8
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 1.3e-102 377.9 394 50.8
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 1.1e-101 374.8 498 47.8
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 5.3e-101 372.5 498 47.8
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 6.9e-101 372.1 502 48.4
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 1.3e-99 367.9 502 48.0
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 7.9e-97 358.6 387 49.9
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 1.0e-96 358.2 424 48.1
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 3.9e-96 356.3 499 45.1
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 5.1e-96 355.9 326 63.5
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 2.1e-94 350.5 444 49.8
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 3.4e-92 343.2 558 40.1
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 5.8e-92 342.4 391 48.6
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 3.3e-87 326.6 374 50.0
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 5.0e-83 312.8 346 48.3
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 1.8e-80 304.3 326 50.3
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 1.8e-77 294.3 191 79.6
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 2.7e-73 280.4 362 42.5
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 8.2e-70 268.9 468 41.7
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 1.8e-64 251.1 322 49.1
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 1.7e-62 244.6 213 62.9
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 3.7e-62 243.4 273 49.8
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 5.3e-61 239.6 318 45.6
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 5.9e-60 236.1 277 50.2
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 4.4e-55 219.9 190 64.2
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 4.2e-50 203.4 166 65.1
Gohir.D10G040800 Gossypium hirsutum HOM05D006050 ORTHO05D007457 3.7e-46 190.3 193 50.8
PGSC0003DMG402021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 6.3e-46 189.5 185 54.6
Carub.0007s2300 Capsella rubella HOM05D006050 ORTHO05D007457 1.1e-45 188.7 299 41.5
Gohir.A10G040000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.8e-45 188.0 193 50.3
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 2.4e-45 187.6 252 42.5
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 1.0e-43 182.2 166 60.2
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 2.0e-39 167.9 106 81.1
SEGI_21633 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 5.4e-37 159.8 151 53.6
CARHR225070 Cardamine hirsuta HOM05D006050 ORTHO05D007457 2.0e-36 157.9 250 40.0
FAN11G0378 Fragaria x ananassa HOM05D006050 ORTHO05D007457 7.8e-36 156.0 143 53.8
DCAR_029765 Daucus carota HOM05D006050 ORTHO05D007457 6.6e-35 152.9 166 51.8
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 1.1e-34 152.1 326 35.0
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 2.6e-31 141.0 241 38.6
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 7.0e-29 132.9 124 58.9
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 1.2e-28 132.1 366 33.3
Pp3c6_19460 Physcomitrium patens HOM05D006050 ORTHO05D007457 1.0e-27 129.0 175 38.9
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 1.9e-26 124.8 104 65.4
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 2.1e-25 121.3 144 49.3
Mapoly0042s0029 Marchantia polymorpha HOM05D006050 ORTHO05D007457 3.6e-25 120.6 154 40.9
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 3.6e-25 120.6 332 32.2
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.7e-22 111.7 77 75.3
CSS0043541 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 4.0e-16 90.5 59 78.0
DCAR_011844 Daucus carota HOM05D006050 ORTHO05D007457 1.4e-13 82.0 84 51.2
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 5.6e-10 70.1 133 41.4
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 2.9e-06 57.8 70 47.1


User provided reference genes

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