Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 3.2e-142 508.4 262 100.0
TPR.G11372 Trifolium pratense HOM05D007839 ORTHO05D009924 1.0e-76 290.8 209 72.2
arahy.Tifrunner.gnm1.ann1.EDFF2E Arachis hypogaea HOM05D007839 ORTHO05D009924 9.8e-43 177.9 233 45.5
Phvul.006G164900 Phaseolus vulgaris HOM05D007839 ORTHO05D009924 6.0e-40 168.7 265 43.8
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 3.7e-34 149.4 166 51.2
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 6.0e-32 142.1 192 44.3
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 6.0e-32 142.1 210 43.8
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 1.9e-30 137.1 261 37.2
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 3.3e-30 136.3 250 36.8
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 1.6e-29 134.0 202 38.1
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 1.6e-29 134.0 208 40.9
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 4.7e-29 132.5 238 35.3
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 4.7e-29 132.5 211 38.9
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 1.8e-28 130.6 234 35.9
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 2.3e-28 130.2 194 42.3
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 3.1e-28 129.8 156 46.2
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 3.1e-28 129.8 247 38.9
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 3.1e-28 129.8 243 36.2
Haze_05595 Corylus avellana HOM05D007839 ORTHO05D009924 6.8e-28 128.6 213 38.0
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 8.9e-28 128.3 237 38.4
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 8.9e-28 128.3 225 39.6
Sabra11G0067200 Salix brachista HOM05D007839 ORTHO05D009924 3.4e-27 126.3 219 38.4
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 7.6e-27 125.2 240 37.1
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 9.9e-27 124.8 197 37.6
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 2.9e-26 123.2 233 37.3
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 2.4e-25 120.2 187 39.6
Sp4g16790 Schrenkiella parvula HOM05D007839 ORTHO05D009924 3.2e-25 119.8 195 37.9
Gohir.D06G142600 Gossypium hirsutum HOM05D007839 ORTHO05D009924 7.1e-25 118.6 210 39.5
BcaB02g09533 Brassica carinata HOM05D007839 ORTHO05D009924 1.6e-24 117.5 222 34.7
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 1.6e-24 117.5 195 40.0
Aa31LG10G6870 Aethionema arabicum HOM05D007839 ORTHO05D009924 2.1e-24 117.1 190 38.4
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 2.1e-24 117.1 210 39.5
Duzib235G0881 Durio zibethinus HOM05D007839 ORTHO05D009924 2.1e-24 117.1 231 37.7
Gorai.010G166400 Gossypium raimondii HOM05D007839 ORTHO05D009924 2.7e-24 116.7 210 39.0
THA.LOC104814297 Tarenaya hassleriana HOM05D007839 ORTHO05D009924 4.6e-24 115.9 165 40.6
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 7.8e-24 115.2 195 36.9
Gohir.A06G137400 Gossypium hirsutum HOM05D007839 ORTHO05D009924 7.8e-24 115.2 210 40.0
BcaC02g11515 Brassica carinata HOM05D007839 ORTHO05D009924 1.3e-23 114.4 190 37.4
AL4G30500 Arabidopsis lyrata HOM05D007839 ORTHO05D009924 1.7e-23 114.0 187 38.0
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 3.9e-23 112.8 196 40.8
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 5.1e-23 112.5 196 40.8
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 5.1e-23 112.5 198 41.4
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 5.1e-23 112.5 197 41.1
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 8.6e-23 111.7 189 40.2
BcaB06g28780 Brassica carinata HOM05D007839 ORTHO05D009924 1.1e-22 111.3 211 35.5
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 4.3e-22 109.4 267 31.1
VMungo0540G1711 Vigna mungo HOM05D007839 ORTHO05D009924 5.6e-22 109.0 270 33.0
AT2G34530 Arabidopsis thaliana HOM05D007839 ORTHO05D009924 7.3e-22 108.6 187 36.9
CsaV3_6G051740 Cucumis sativus L. HOM05D007839 ORTHO05D009924 2.1e-21 107.1 166 41.0
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 2.1e-21 107.1 182 39.0
C04p63860 Brassica napus HOM05D007839 ORTHO05D009924 8.1e-21 105.1 200 35.5
BraA04t18149Z Brassica rapa HOM05D007839 ORTHO05D009924 8.1e-21 105.1 200 35.5
arahy.Tifrunner.gnm1.ann1.9V8GBM Arachis hypogaea HOM05D007839 ORTHO05D009924 1.4e-20 104.4 191 39.3
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 1.4e-20 104.4 196 37.8
BolC4t27853H Brassica oleracea HOM05D007839 ORTHO05D009924 1.8e-20 104.0 152 40.8
BolC4t23033H Brassica oleracea HOM05D007839 ORTHO05D009924 2.4e-20 103.6 189 36.0
BraA05t20061Z Brassica rapa HOM05D007839 ORTHO05D009924 5.2e-20 102.4 189 35.4
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.2e-19 101.3 156 40.4
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.2e-19 101.3 103 52.4
CANSAT35G0562 Cannabis sativa HOM05D007839 ORTHO05D009924 1.5e-19 100.9 206 35.0
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 2.6e-19 100.1 91 53.8
GSVIVG01021458001 Vitis vinifera HOM05D007839 ORTHO05D009924 4.4e-19 99.4 122 47.5
C04p14500 Brassica napus HOM05D007839 ORTHO05D009924 1.7e-18 97.4 131 43.5
PGSC0003DMG400021096 Solanum tuberosum HOM05D007839 ORTHO05D009924 2.2e-18 97.1 122 46.7
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 3.8e-18 96.3 160 38.8
RcHm_v2.0_Chr5g0014111 Rosa chinensis HOM05D007839 ORTHO05D009924 3.8e-18 96.3 175 39.4
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 3.8e-18 96.3 190 36.3
A05p11150 Brassica napus HOM05D007839 ORTHO05D009924 4.9e-18 95.9 131 42.7
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 3.2e-17 93.2 150 34.7
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.7e-16 90.1 130 38.5
A04p26450 Brassica napus HOM05D007839 ORTHO05D009924 3.5e-16 89.7 137 39.4
GSVIVG01021451001 Vitis vinifera HOM05D007839 ORTHO05D009924 4.6e-16 89.4 188 32.4
Thhalv10017730m.g Eutrema salsugineum HOM05D007839 ORTHO05D009924 5.1e-15 85.9 145 37.9
Gorai.010G238500 Gossypium raimondii HOM05D007839 ORTHO05D009924 6.2e-13 79.0 206 31.6
ATR1091G017 Amborella trichopoda HOM05D007839 ORTHO05D009924 3.1e-12 76.6 172 32.0
Carub.0004s1620 Capsella rubella HOM05D007839 ORTHO05D009924 3.1e-12 76.6 190 33.2
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.0e-11 73.9 97 39.2
CANSAT35G0336 Cannabis sativa HOM05D007839 ORTHO05D009924 6.4e-10 68.9 114 40.4
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 8.4e-10 68.6 118 40.7
Gohir.D06G204450 Gossypium hirsutum HOM05D007839 ORTHO05D009924 8.4e-10 68.6 118 36.4
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 2.4e-09 67.0 103 40.8
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 3.2e-09 66.6 102 44.1
Haze_05600 Corylus avellana HOM05D007839 ORTHO05D009924 9.3e-09 65.1 126 38.9
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 1.6e-08 64.3 142 33.8
Glyma.13G218176 Glycine max HOM05D007839 ORTHO05D009924 2.1e-08 63.9 124 37.9
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 2.7e-08 63.5 108 38.0
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 6.0e-08 62.4 101 39.6
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 7.8e-08 62.0 100 40.0
ATR1091G011 Amborella trichopoda HOM05D007839 ORTHO05D009924 1.3e-07 61.2 149 30.2
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 1.3e-07 61.2 113 36.3
Aa31LG10G6860 Aethionema arabicum HOM05D008587 ORTHO05D010485 1.7e-07 60.8 113 35.4
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 2.3e-07 60.5 108 38.0
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 2.3e-07 60.5 107 36.4
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 3.0e-07 60.1 113 35.4
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 5.1e-07 59.3 113 34.5
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 5.1e-07 59.3 113 35.4
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 8.7e-07 58.5 108 35.2
TWI73G0910 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 8.7e-07 58.5 108 30.6
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 2.5e-06 57.0 127 33.1
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 2.5e-06 57.0 127 33.1
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 2.5e-06 57.0 127 33.1
FAN16G1026 Fragaria x ananassa HOM05D014465 ORTHO05D010485 2.5e-06 57.0 68 39.7
QL05p058191 Quercus lobata HOM05D008587 ORTHO05D010485 2.5e-06 57.0 127 34.6
FAN11G1722 Fragaria x ananassa HOM05D014465 ORTHO05D010485 3.3e-06 56.6 105 36.2
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 4.3e-06 56.2 127 32.3
CANSAT35G0142 Cannabis sativa HOM05D008587 ORTHO05D010485 4.3e-06 56.2 143 30.8
FAN16G1258 Fragaria x ananassa HOM05D014465 ORTHO05D010485 4.3e-06 56.2 104 34.6
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 5.6e-06 55.8 113 35.4
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 5.6e-06 55.8 113 35.4
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 9.6e-06 55.1 113 32.7


User provided reference genes

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