Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 2.3e-271 938.3 495 100.0
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 2.4e-223 778.9 501 81.4
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.2e-206 723.4 503 76.3
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.5e-188 663.3 505 70.9
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.2e-187 660.2 544 66.9
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 8.3e-184 647.5 503 72.2
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.8e-181 638.6 539 65.7
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.1e-175 620.5 348 90.5
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 1.5e-172 610.1 429 73.4
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 9.5e-172 607.4 523 64.6
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.3e-170 602.8 515 65.0
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 8.9e-170 600.9 485 66.6
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.5e-169 600.1 500 65.8
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 4.4e-169 598.6 501 68.9
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 5.8e-153 545.0 557 56.6
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.4e-151 540.4 550 56.2
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.4e-151 540.4 544 55.3
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 2.4e-151 539.7 534 57.3
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 1.6e-150 537.0 543 54.9
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.3e-149 533.9 559 55.8
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 6.6e-149 531.6 535 54.6
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 2.5e-148 529.6 528 57.2
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 5.6e-148 528.5 539 55.5
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 6.2e-147 525.0 545 55.0
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 6.8e-146 521.5 550 54.5
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 5.8e-145 518.5 538 54.6
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 7.6e-145 518.1 543 53.4
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 1.7e-144 516.9 491 58.5
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.4e-144 515.0 533 54.0
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.4e-144 515.0 538 53.5
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 8.4e-144 514.6 535 54.0
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.4e-143 513.8 535 53.8
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.9e-143 513.5 537 54.7
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 2.4e-143 513.1 551 53.5
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 3.2e-143 512.7 553 53.5
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 5.4e-143 511.9 541 52.7
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 1.6e-142 510.4 530 53.8
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 2.1e-142 510.0 545 54.1
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 3.5e-142 509.2 685 46.4
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 4.6e-142 508.8 540 54.3
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 7.8e-142 508.1 540 54.3
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 2.3e-141 506.5 322 83.9
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 3.9e-141 505.8 535 53.3
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 3.9e-141 505.8 540 53.7
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 8.6e-141 504.6 497 56.5
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.1e-140 504.2 539 54.0
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 1.9e-140 503.4 551 52.5
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 2.5e-140 503.1 539 53.1
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.5e-140 503.1 542 53.3
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 7.3e-140 501.5 550 52.9
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 7.3e-140 501.5 543 53.6
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.2e-139 500.7 497 57.5
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.6e-139 500.4 498 56.6
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 8.1e-139 498.0 542 52.4
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 9.0e-138 494.6 523 55.3
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.4e-137 492.3 498 56.0
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 7.6e-137 491.5 430 61.9
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 9.9e-137 491.1 549 52.5
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 9.9e-137 491.1 544 52.4
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 9.9e-137 491.1 537 52.3
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 1.1e-135 487.6 576 50.2
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 4.2e-135 485.7 538 52.8
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 3.0e-133 479.6 540 50.7
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.5e-129 467.2 537 51.0
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 3.4e-129 466.1 520 51.7
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 5.8e-129 465.3 539 50.5
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 7.6e-129 464.9 539 50.5
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 9.9e-129 464.5 539 49.4
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 4.9e-128 462.2 520 51.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 3.2e-127 459.5 521 51.1
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 5.4e-127 458.8 500 55.4
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 5.4e-127 458.8 520 51.0
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 2.7e-126 456.4 514 51.0
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 4.6e-126 455.7 573 47.5
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.0e-125 454.5 540 49.1
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 5.1e-125 452.2 511 50.7
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.5e-124 450.7 515 50.9
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.5e-124 450.7 514 50.8
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.5e-124 450.7 514 50.8
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 1.9e-124 450.3 520 50.0
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.9e-124 450.3 515 51.1
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 4.3e-124 449.1 532 49.6
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 5.6e-124 448.7 540 49.6
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 2.1e-123 446.8 518 49.0
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 8.1e-123 444.9 429 54.5
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 8.1e-123 444.9 528 50.2
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 2.0e-121 440.3 521 49.7
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.0e-121 440.3 533 48.6
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 2.0e-121 440.3 526 50.4
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.3e-120 437.6 535 49.9
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.3e-117 426.8 427 52.5
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.3e-115 421.0 437 52.6
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 5.8e-113 412.1 522 47.3
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 8.4e-112 408.3 538 47.0
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.9e-108 397.1 427 51.8
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 2.5e-108 396.7 217 89.9
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 6.5e-104 382.1 423 49.6
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.1e-87 328.2 436 43.1
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 8.2e-83 312.0 370 51.9
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.2e-81 308.1 544 38.6
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 2.9e-80 303.5 433 41.3
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 3.0e-77 293.5 439 41.7
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 4.4e-76 289.7 517 38.3
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 4.8e-75 286.2 281 57.7
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 3.8e-72 276.6 425 37.6
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.5e-71 274.6 344 49.1
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.3e-69 267.3 365 46.8
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.4e-68 263.1 275 53.8
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 5.7e-68 262.7 417 40.0
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 9.1e-66 255.4 263 51.7
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.9e-64 250.4 266 51.5
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 7.2e-63 245.7 260 50.4
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 9.2e-58 228.8 416 36.5
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 5.9e-57 226.1 273 46.5
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 5.0e-56 223.0 257 53.3
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 4.3e-55 219.9 119 94.1
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.0e-53 213.8 166 63.9
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 8.9e-53 212.2 160 66.2
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.9e-47 194.5 147 74.8
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.2e-46 191.8 180 56.1
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.2e-44 185.3 145 66.9
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.0e-44 184.5 155 60.6
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.3e-40 171.8 335 36.4
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 7.3e-39 166.0 189 48.7
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.2e-38 165.2 157 55.4
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.3e-37 161.0 123 66.7
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 2.6e-36 157.5 260 40.8
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 2.1e-33 147.9 128 67.2
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.5e-23 114.4 266 36.1
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 7.3e-15 86.3 100 51.0
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-14 85.5 93 52.7
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-14 85.5 93 52.7
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.9e-11 73.6 239 30.1
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.9e-10 71.6 239 30.1
Medtr0199s0030 Medicago truncatula HOM05D005606 ORTHO05D006446 1.9e-10 71.6 42 83.3
Medtr8g007575 Medicago truncatula HOM05D005606 ORTHO05D006446 5.4e-10 70.1 55 70.9
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 1.8e-08 65.1 95 41.1
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 3.7e-06 57.4 87 34.5


User provided reference genes

Program Settings