Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g018310 Medicago truncatula HOM05D006661 ORTHO05D008369 6.2e-117 424.1 205 100.0
Psat1g192360 Pisum sativum HOM05D006661 ORTHO05D008369 2.4e-113 412.1 203 96.6
Ca_00502_v3 Cicer arietinum L. HOM05D006661 ORTHO05D008369 5.4e-113 411.0 205 95.6
TPR.G20633 Trifolium pratense HOM05D006661 ORTHO05D008369 2.7e-112 408.7 203 95.6
arahy.Tifrunner.gnm1.ann1.KA607S Arachis hypogaea HOM05D006661 ORTHO05D008369 2.1e-109 399.1 203 93.1
arahy.Tifrunner.gnm1.ann1.R5Q5WD Arachis hypogaea HOM05D006661 ORTHO05D008369 4.7e-109 397.9 203 92.6
Lj4g0006609 Lotus japonicus HOM05D006661 ORTHO05D008369 8.1e-109 397.1 205 92.2
ClCG08G016930 Citrullus lanatus HOM05D006661 ORTHO05D008369 1.4e-108 396.4 203 91.1
CsaV3_2G025680 Cucumis sativus L. HOM05D006661 ORTHO05D008369 6.8e-108 394.0 203 90.6
TWI34G0500 Tripterygium wilfordii HOM05D006661 ORTHO05D008369 6.8e-108 394.0 203 91.6
Ciclev10009515m.g Citrus clementina HOM05D006661 ORTHO05D008369 5.8e-107 391.0 203 90.6
Glyma.13G222200 Glycine max HOM05D006661 ORTHO05D008369 9.8e-107 390.2 203 90.6
Cfa017936 Carpinus fangiana HOM05D006661 ORTHO05D008369 1.7e-106 389.4 203 91.1
Lalb_Chr18g0055101 Lupinus albus HOM05D006661 ORTHO05D008369 3.7e-106 388.3 203 90.1
CANSAT25G2346 Cannabis sativa HOM05D006661 ORTHO05D008369 4.9e-106 387.9 203 88.7
Sed0008959 Sechium edule HOM05D006661 ORTHO05D008369 1.9e-105 386.0 203 89.2
Eucgr.H03073 Eucalyptus grandis HOM05D006661 ORTHO05D008369 2.4e-105 385.6 203 89.2
PGR031G2394 Punica granatum HOM05D006661 ORTHO05D008369 2.4e-105 385.6 203 88.7
HanXRQChr09g0251201 Helianthus annuus HOM05D006661 ORTHO05D008369 3.2e-105 385.2 203 88.7
Lsat_1_v5_gn_6_13140 Lactuca sativa HOM05D006661 ORTHO05D008369 3.2e-105 385.2 203 89.7
QL02p001540 Quercus lobata HOM05D006661 ORTHO05D008369 7.1e-105 384.0 203 89.2
Atru.chr7.2017 Acer truncatum HOM05D006661 ORTHO05D008369 1.6e-104 382.9 203 88.2
CSS0024744 Camellia sinensis var. sinensis HOM05D006661 ORTHO05D008369 1.6e-104 382.9 203 88.2
ECA233G6145 Erigeron canadensis HOM05D006661 ORTHO05D008369 2.1e-104 382.5 203 88.2
Aqoxy7G01325 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 2.7e-104 382.1 203 88.2
CiPaw.16G029900 Carya illinoinensis HOM05D006661 ORTHO05D008369 3.5e-104 381.7 203 89.2
Duzib187G1697 Durio zibethinus HOM05D006661 ORTHO05D008369 1.0e-103 380.2 203 87.2
SalBow4G0568 Salvia bowleyana HOM05D006661 ORTHO05D008369 1.0e-103 380.2 203 87.7
Potri.018G056100 Populus trichocarpa HOM05D006661 ORTHO05D008369 1.3e-103 379.8 203 88.2
FvH4_2g32150 Fragaria vesca HOM05D006661 ORTHO05D008369 3.0e-103 378.6 203 88.7
FAN24G0958 Fragaria x ananassa HOM05D006661 ORTHO05D008369 3.0e-103 378.6 203 88.7
FAN15G2916 Fragaria x ananassa HOM05D006661 ORTHO05D008369 3.9e-103 378.3 203 89.2
FAN20G2753 Fragaria x ananassa HOM05D006661 ORTHO05D008369 3.9e-103 378.3 203 89.2
MSTRG.11669 Avicennia marina HOM05D006661 ORTHO05D008369 5.1e-103 377.9 203 87.7
Gohir.D06G089000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 5.1e-103 377.9 203 86.7
Rhsim11G0046400 Rhododendron simsii HOM05D006661 ORTHO05D008369 6.6e-103 377.5 203 87.2
SGA_v2.0_scaffold88G27220 Striga asiatica HOM05D006661 ORTHO05D008369 6.6e-103 377.5 203 87.2
Phvul.006G168200 Phaseolus vulgaris HOM05D006661 ORTHO05D008369 8.6e-103 377.1 203 86.2
RcHm_v2.0_Chr6g0310531 Rosa chinensis HOM05D006661 ORTHO05D008369 8.6e-103 377.1 203 89.2
Gohir.A06G090000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 1.5e-102 376.3 203 86.2
Thecc.09G051500 Theobroma cacao HOM05D006661 ORTHO05D008369 1.9e-102 375.9 203 86.2
Sabra06G0181100 Salix brachista HOM05D006661 ORTHO05D008369 2.5e-102 375.6 203 85.7
VMungo0540G1431 Vigna mungo HOM05D006661 ORTHO05D008369 2.5e-102 375.6 203 86.2
Prupe.1G414600 Prunus persica HOM05D006661 ORTHO05D008369 4.3e-102 374.8 203 87.7
Sopen08g019360 Solanum pennellii HOM05D006661 ORTHO05D008369 4.3e-102 374.8 203 87.2
GSVIVG01035347001 Vitis vinifera HOM05D006661 ORTHO05D008369 5.6e-102 374.4 203 85.7
Hund03354 Selenicereus undatus HOM05D006661 ORTHO05D008369 7.3e-102 374.0 203 86.2
Sp4g05860 Schrenkiella parvula HOM05D006661 ORTHO05D008369 1.2e-101 373.2 203 84.7
Solyc08g065640.3 Solanum lycopersicum HOM05D006661 ORTHO05D008369 1.2e-101 373.2 203 86.7
Actinidia01201 Actinidia chinensis HOM05D006661 ORTHO05D008369 1.6e-101 372.9 203 84.7
Nitab4.5_0000359g0060 Nicotiana tabacum HOM05D006661 ORTHO05D008369 2.1e-101 372.5 203 86.7
Aa31LG5G9740 Aethionema arabicum HOM05D006661 ORTHO05D008369 2.8e-101 372.1 203 84.7
Migut.A00149 Erythranthe guttata HOM05D006661 ORTHO05D008369 2.8e-101 372.1 203 85.2
PGSC0003DMG400002199 Solanum tuberosum HOM05D006661 ORTHO05D008369 2.8e-101 372.1 203 86.2
Peaxi162Scf00436g00823 Petunia axillaris HOM05D006661 ORTHO05D008369 4.7e-101 371.3 203 85.2
Haze_18212 Corylus avellana HOM05D006661 ORTHO05D008369 6.2e-101 370.9 191 92.1
Gorai.010G102800 Gossypium raimondii HOM05D006661 ORTHO05D008369 6.2e-101 370.9 203 86.2
C04p55870 Brassica napus HOM05D006661 ORTHO05D008369 1.1e-100 370.2 203 84.7
AUR62022048 Chenopodium quinoa HOM05D006661 ORTHO05D008369 1.8e-100 369.4 203 84.7
BcaC02g08315 Brassica carinata HOM05D006661 ORTHO05D008369 2.3e-100 369.0 203 84.2
BolC4t27119H Brassica oleracea HOM05D006661 ORTHO05D008369 2.3e-100 369.0 203 84.2
Nn6g35396 Nelumbo nucifera HOM05D006661 ORTHO05D008369 4.0e-100 368.2 203 84.2
Nitab4.5_0001179g0020 Nicotiana tabacum HOM05D006661 ORTHO05D008369 6.8e-100 367.5 203 87.2
Thhalv10002098m.g Eutrema salsugineum HOM05D006661 ORTHO05D008369 8.9e-100 367.1 203 83.7
Manes.16G078200 Manihot esculenta HOM05D006661 ORTHO05D008369 8.9e-100 367.1 195 87.7
BcaB06g29613 Brassica carinata HOM05D006661 ORTHO05D008369 1.5e-99 366.3 203 83.3
TAR383G0029 Trochodendron aralioides HOM05D006661 ORTHO05D008369 1.5e-99 366.3 203 84.2
AL4G18030 Arabidopsis lyrata HOM05D006661 ORTHO05D008369 2.0e-99 365.9 203 83.3
MD08G1044700 Malus domestica HOM05D006661 ORTHO05D008369 2.6e-99 365.5 203 85.2
unitig_748.g7518 Utricularia gibba HOM05D006661 ORTHO05D008369 3.4e-99 365.2 203 85.2
CAN.G6.20 Capsicum annuum HOM05D006661 ORTHO05D008369 5.8e-99 364.4 203 84.7
vmacro00160 Vaccinium macrocarpon HOM05D006661 ORTHO05D008369 7.6e-99 364.0 191 89.5
Zm00001eb162230 Zea mays HOM05D006661 ORTHO05D008369 2.9e-98 362.1 203 81.8
Carub.0004s0581 Capsella rubella HOM05D006661 ORTHO05D008369 4.9e-98 361.3 203 81.8
Cc08_g10380 Coffea canephora HOM05D006661 ORTHO05D008369 8.4e-98 360.5 203 82.8
Os01g0559000 Oryza sativa ssp. japonica HOM05D006661 ORTHO05D008369 1.1e-97 360.1 203 81.3
THA.LOC104803733 Tarenaya hassleriana HOM05D006661 ORTHO05D008369 1.1e-97 360.1 204 82.8
PSO832G3146 Papaver somniferum HOM05D006661 ORTHO05D008369 1.4e-97 359.8 203 84.2
CARHR287330 Cardamine hirsuta HOM05D006661 ORTHO05D008369 3.2e-97 358.6 203 81.3
Duzib168G0126 Durio zibethinus HOM05D000575 ORTHO05D008369 1.0e-95 353.6 191 85.9
DCAR_003069 Daucus carota HOM05D006661 ORTHO05D008369 1.7e-95 352.8 189 86.8
ATR0789G168 Amborella trichopoda HOM05D006661 ORTHO05D008369 2.3e-95 352.4 203 80.8
A04p20170 Brassica napus HOM05D006661 ORTHO05D008369 3.9e-95 351.7 191 85.3
BraA04t17597Z Brassica rapa HOM05D006661 ORTHO05D008369 3.9e-95 351.7 191 85.3
Cpa.g.sc7.195 Carica papaya HOM05D006661 ORTHO05D008369 1.1e-94 350.1 191 85.9
AT2G25950 Arabidopsis thaliana HOM05D006661 ORTHO05D008369 2.5e-94 349.0 191 84.3
CDE07G0448 Ceratophyllum demersum HOM05D006661 ORTHO05D008369 4.7e-93 344.7 203 79.3
MELO3C030341.2 Cucumis melo HOM05D006661 ORTHO05D008369 1.2e-88 330.1 264 64.8
HPP92_005507 Vanilla planifolia HOM05D006661 ORTHO05D008369 7.8e-88 327.4 203 74.9
Hma1.2p1_2451F.1_g322380 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 9.6e-86 320.5 203 75.9
AUR62009178 Chenopodium quinoa HOM05D006661 ORTHO05D008369 4.9e-82 308.1 175 82.3
EL10Ac2g03924 Beta vulgaris HOM05D006661 ORTHO05D008369 9.3e-81 303.9 211 71.1
Lj8A552G6 Lonicera japonica HOM05D006661 ORTHO05D008369 9.3e-81 303.9 163 90.2
Hma1.2p1_0450F.1_g155690 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 1.0e-79 300.4 164 87.2
Aqoxy6G02410 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 1.3e-74 283.5 212 68.9
SMO169G0297 Selaginella moellendorffii HOM05D006661 ORTHO05D008369 1.6e-72 276.6 190 66.8
AagrBONN_evm.TU.Sc2ySwM_362.2052 Anthoceros agrestis HOM05D006661 ORTHO05D008369 6.0e-72 274.6 197 64.5
CBR_g22258 Chara braunii HOM05D006661 ORTHO05D008369 1.0e-71 273.9 201 63.7
Pp3c22_18330 Physcomitrium patens HOM05D006661 ORTHO05D008369 1.3e-71 273.5 196 63.8
FAN27G1843 Fragaria x ananassa HOM05D006661 ORTHO05D008369 2.6e-67 259.2 163 81.0
Sc23g0005520 Simmondsia chinensis HOM05D006661 ORTHO05D008369 2.1e-64 249.6 134 88.1
Sabra06G0180500 Salix brachista HOM05D006661 ORTHO05D008369 4.6e-64 248.4 134 85.8
PSO063G2325 Papaver somniferum HOM05D006661 ORTHO05D008369 5.7e-62 241.5 131 86.3
CANSAT78G0664 Cannabis sativa HOM05D006661 ORTHO05D008369 1.6e-56 223.4 119 88.2
SEGI_00170 Sequoiadendron giganteum HOM05D006661 ORTHO05D008369 2.4e-52 209.5 131 71.8
Oeu036347.1 Olea europaea HOM05D006661 ORTHO05D008369 2.9e-50 202.6 108 87.0
Sabra06G0180400 Salix brachista HOM05D006661 ORTHO05D008369 3.7e-45 185.7 98 86.7
CANSAT25G1095 Cannabis sativa HOM05D006661 ORTHO05D008369 3.4e-43 179.1 96 86.5
MD08G1045300 Malus domestica HOM05D006661 ORTHO05D008369 6.5e-42 174.9 98 83.7
Cre02.g110450 Chlamydomonas reinhardtii HOM05D006661 ORTHO05D008369 3.3e-38 162.5 193 42.5
QL02p001525 Quercus lobata HOM05D006661 ORTHO05D008369 2.2e-37 159.8 94 78.7
MCO14G523 Micromonas commoda HOM05D006661 ORTHO05D008369 2.7e-32 142.9 134 47.0
PRCOL_00000611 Prasinoderma coloniale HOM05D006661 ORTHO05D008369 8.0e-32 141.4 193 37.3
Mapoly0027s0002 Marchantia polymorpha HOM05D006661 ORTHO05D008369 5.9e-19 98.6 185 32.4
Cfa026513 Carpinus fangiana HOM05D006661 ORTHO05D008369 1.5e-17 94.0 218 29.8
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 8.0e-16 88.2 45 97.8
arahy.Tifrunner.gnm1.ann1.K04B1Q Arachis hypogaea HOM05D006661 ORTHO05D008369 8.0e-16 88.2 45 97.8
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 8.0e-16 88.2 45 97.8
arahy.Tifrunner.gnm1.ann1.XSX4PG Arachis hypogaea HOM05D006661 ORTHO05D008369 3.0e-15 86.3 45 95.6
COL.COLO4_21031 Corchorus olitorius HOM05D006661 ORTHO05D008369 8.8e-15 84.7 44 86.4
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 3.5e-11 72.8 158 31.6
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 7.8e-11 71.6 158 34.2
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 1.7e-10 70.5 162 30.2
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 1.7e-10 70.5 162 34.0
PRCOL_00004155 Prasinoderma coloniale HOM05D005403 ORTHO05D006572 2.3e-10 70.1 159 32.1
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 2.9e-10 69.7 158 31.6
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 3.8e-10 69.3 158 31.6
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 6.6e-10 68.6 153 30.1
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 8.6e-10 68.2 158 31.6
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 1.1e-09 67.8 158 32.3
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 1.1e-09 67.8 158 31.6
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 1.5e-09 67.4 162 31.5
HPP92_015625 Vanilla planifolia HOM05D005403 ORTHO05D006572 1.9e-09 67.0 152 30.9
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 1.9e-09 67.0 158 32.3
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 2.5e-09 66.6 153 31.4
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 2.5e-09 66.6 158 30.4
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 3.3e-09 66.2 158 31.6
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 4.3e-09 65.9 158 31.6
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 5.6e-09 65.5 158 31.6
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 5.6e-09 65.5 162 30.2
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 7.3e-09 65.1 162 32.7
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 7.3e-09 65.1 158 29.7
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 9.5e-09 64.7 158 31.6
Ca_10048_v3 Cicer arietinum L. HOM05D005403 ORTHO05D006572 2.1e-08 63.5 158 31.6
Duzib177G0905 Durio zibethinus HOM05D005403 ORTHO05D006572 2.8e-08 63.2 158 29.7
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 2.8e-08 63.2 162 30.9
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 3.6e-08 62.8 149 30.9
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 4.7e-08 62.4 158 31.0
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 4.7e-08 62.4 158 32.3
Nitab4.5_0004055g0120 Nicotiana tabacum HOM05D006661 ORTHO05D008369 6.1e-08 62.0 66 42.4
MCO08G264 Micromonas commoda HOM05D005403 ORTHO05D006572 1.0e-07 61.2 152 28.9
Nn6g34152 Nelumbo nucifera HOM05D005403 ORTHO05D006572 1.0e-07 61.2 158 30.4
CsaV3_2G004230 Cucumis sativus L. HOM05D005403 ORTHO05D006572 2.3e-07 60.1 120 33.3
Prupe.1G326300 Prunus persica HOM05D006661 ORTHO05D008369 4.0e-07 59.3 33 84.8
SMO340G0197 Selaginella moellendorffii HOM05D005403 ORTHO05D006572 5.2e-07 58.9 153 29.4
SEGI_41475 Sequoiadendron giganteum HOM05D005403 ORTHO05D006572 5.2e-07 58.9 149 29.5
MELO3C004371.2 Cucumis melo HOM05D005403 ORTHO05D006572 2.0e-06 57.0 111 32.4
DCAR_027617 Daucus carota HOM05D005403 ORTHO05D006572 2.0e-06 57.0 148 29.1
Oeu027466.2 Olea europaea HOM05D005403 ORTHO05D006572 2.0e-06 57.0 169 29.6
Aqoxy2G03453 Aquilegia oxysepala HOM05D005403 ORTHO05D006572 9.8e-06 54.7 158 28.5


User provided reference genes

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