Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 1.5e-113 412.9 213 100.0
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 2.4e-92 342.4 213 83.6
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 1.1e-89 333.6 215 81.4
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.4e-84 316.6 215 78.1
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.4e-84 316.6 215 78.1
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 1.6e-72 276.6 213 65.3
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 5.9e-62 241.5 216 61.6
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 2.2e-61 239.6 206 62.1
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.6e-59 233.4 216 59.3
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 1.5e-52 210.3 200 57.0
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 7.2e-52 208.0 212 53.8
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 2.7e-51 206.1 212 52.8
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 1.4e-47 193.7 212 50.9
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 5.0e-45 185.3 208 48.6
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 6.5e-45 184.9 185 51.9
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 5.5e-44 181.8 198 51.0
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 1.0e-42 177.6 213 47.9
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.8e-42 176.8 186 52.2
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 2.3e-42 176.4 205 46.8
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 4.0e-42 175.6 195 48.7
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 8.8e-42 174.5 208 47.6
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 1.2e-41 174.1 203 46.3
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.4e-41 172.6 195 47.7
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 4.4e-41 172.2 212 44.3
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 4.4e-41 172.2 203 46.3
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.4e-41 172.2 198 48.5
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.4e-41 172.2 195 47.7
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 9.8e-41 171.0 190 48.4
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 9.8e-41 171.0 201 46.8
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 3.7e-40 169.1 190 48.9
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 8.3e-40 167.9 212 43.4
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 1.1e-39 167.5 210 48.1
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 4.1e-39 165.6 206 44.7
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 4.1e-39 165.6 181 49.7
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 5.4e-39 165.2 213 42.7
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 7.0e-39 164.9 203 47.8
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 9.1e-39 164.5 208 43.8
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 1.6e-38 163.7 192 49.0
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 3.5e-38 162.5 206 43.2
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 1.0e-37 161.0 191 45.5
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.0e-37 161.0 220 43.6
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.3e-37 160.6 214 43.9
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 1.3e-37 160.6 202 43.1
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.3e-37 160.6 191 44.0
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 1.7e-37 160.2 214 43.9
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 2.2e-37 159.8 205 47.8
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 6.5e-37 158.3 205 45.4
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.1e-36 157.5 191 45.5
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 1.5e-36 157.1 207 42.0
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 1.5e-36 157.1 217 42.4
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 2.5e-36 156.4 190 44.2
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 4.2e-36 155.6 191 45.5
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 7.2e-36 154.8 203 42.4
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 9.4e-36 154.5 201 44.3
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 9.4e-36 154.5 192 45.8
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 2.1e-35 153.3 202 41.6
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.7e-35 152.9 206 43.7
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 3.6e-35 152.5 203 41.4
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 4.7e-35 152.1 191 44.5
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 8.0e-35 151.4 206 43.2
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 8.0e-35 151.4 204 46.1
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 1.8e-34 150.2 215 42.3
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 2.3e-34 149.8 199 41.7
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 4.0e-34 149.1 202 40.6
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 5.2e-34 148.7 202 40.6
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 2.0e-33 146.7 199 44.2
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 2.6e-33 146.4 195 45.1
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 3.4e-33 146.0 178 46.1
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 5.7e-33 145.2 215 42.3
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 5.7e-33 145.2 213 40.8
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 9.8e-33 144.4 213 41.8
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 1.7e-32 143.7 210 41.0
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 1.1e-31 141.0 209 42.1
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 5.4e-31 138.7 217 39.2
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 7.0e-31 138.3 200 43.0
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 9.2e-31 137.9 227 36.6
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 2.7e-30 136.3 227 35.2
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 3.5e-30 136.0 228 35.5
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 3.5e-30 136.0 282 33.7
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 1.0e-29 134.4 222 34.7
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 1.0e-29 134.4 222 34.2
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 1.3e-29 134.0 189 36.5
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 2.3e-29 133.3 228 34.2
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 5.0e-29 132.1 228 33.3
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 6.6e-29 131.7 228 33.8
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 6.6e-29 131.7 228 33.8
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 8.6e-29 131.3 227 34.8
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 8.6e-29 131.3 189 35.4
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 1.1e-28 131.0 210 40.0
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.9e-28 130.2 175 42.9
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.3e-28 129.0 175 42.3
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 1.2e-27 127.5 184 42.4
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 1.6e-27 127.1 215 40.9
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 2.1e-27 126.7 228 34.2
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 2.1e-27 126.7 183 41.0
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.2e-26 122.1 241 37.3
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.7e-24 117.1 102 57.8
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 2.9e-24 116.3 197 37.1
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 9.2e-23 111.3 113 48.7
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.6e-22 110.5 197 37.1
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 7.3e-20 101.7 213 31.0
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 1.6e-19 100.5 99 51.5
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.8e-19 99.8 159 40.9
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 4.7e-19 99.0 99 50.5
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 6.2e-19 98.6 182 35.7
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.0e-18 97.8 98 48.0
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 2.3e-18 96.7 146 41.1
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 6.8e-18 95.1 85 55.3
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 4.9e-16 89.0 166 35.5
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 2.4e-15 86.7 81 46.9
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 1.6e-14 84.0 198 30.8
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 3.5e-14 82.8 196 31.1
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 6.6e-13 78.6 150 34.0
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 3.3e-12 76.3 128 37.5
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.4e-10 70.9 98 39.8
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 8.3e-08 61.6 49 53.1
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 2.1e-06 57.0 49 57.1
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 2.7e-06 56.6 72 48.6


User provided reference genes

Program Settings