Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 7.8e-52 206.8 103 100.0
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 5.6e-34 147.5 103 73.8
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 9.9e-31 136.7 105 72.4
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 3.0e-27 125.2 105 66.7
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 8.6e-27 123.6 95 66.3
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 1.1e-24 116.7 104 62.5
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 5.2e-24 114.4 104 60.6
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 7.6e-23 110.5 104 59.6
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 3.8e-22 108.2 103 56.3
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.4e-21 106.3 104 54.8
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 1.9e-21 105.9 73 74.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 5.4e-21 104.4 103 52.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.2e-20 103.2 97 52.6
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 2.1e-20 102.4 103 58.3
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 4.6e-20 101.3 106 51.9
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 6.0e-20 100.9 107 54.2
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.0e-19 100.1 103 53.4
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.3e-19 99.8 99 55.6
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.3e-19 99.0 103 52.4
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 2.3e-19 99.0 86 61.6
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.9e-18 95.9 98 51.0
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 7.3e-18 94.0 94 55.3
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.1e-17 92.4 103 49.5
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 1.8e-16 89.4 101 51.5
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.8e-16 89.4 98 51.0
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.6e-15 85.5 103 50.5
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 5.8e-15 84.3 103 50.5
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.8e-15 84.3 103 47.6
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 1.7e-14 82.8 74 54.1
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 2.2e-14 82.4 97 46.4
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 2.9e-14 82.0 100 51.0
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 4.9e-14 81.3 103 44.7
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 6.4e-14 80.9 106 48.1
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.4e-14 80.9 103 46.6
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 8.4e-14 80.5 93 50.5
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.9e-13 79.3 105 43.8
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 2.4e-13 79.0 102 46.1
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.4e-13 79.0 107 46.7
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 2.4e-13 79.0 107 47.7
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 3.2e-13 78.6 99 50.5
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.4e-13 77.8 107 45.8
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.4e-13 77.8 107 45.8
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 7.1e-13 77.4 106 46.2
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 9.3e-13 77.0 107 45.8
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.2e-12 76.6 100 47.0
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.2e-12 76.6 100 47.0
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.2e-12 76.6 95 45.3
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 2.1e-12 75.9 91 48.4
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 2.1e-12 75.9 103 45.6
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.7e-12 75.5 104 46.2
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.5e-12 75.1 107 44.9
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.5e-12 75.1 104 46.2
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 3.5e-12 75.1 104 42.3
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 4.6e-12 74.7 96 44.8
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 4.6e-12 74.7 104 44.2
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 6.0e-12 74.3 94 45.7
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 7.8e-12 73.9 103 43.7
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 7.8e-12 73.9 95 45.3
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 1.7e-11 72.8 107 42.1
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.3e-11 72.4 96 44.8
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.0e-11 72.0 63 58.7
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.1e-11 71.2 103 44.7
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.7e-11 70.5 104 42.3
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 8.7e-11 70.5 112 39.3
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 1.1e-10 70.1 94 43.6
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 1.1e-10 70.1 98 48.0
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 1.9e-10 69.3 94 41.5
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 1.9e-10 69.3 99 43.4
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 2.5e-10 68.9 108 46.3
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 3.3e-10 68.6 110 40.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 3.3e-10 68.6 95 44.2
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 4.3e-10 68.2 104 42.3
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.3e-10 68.2 104 41.3
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 4.3e-10 68.2 104 41.3
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.3e-10 67.4 69 50.7
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 1.6e-09 66.2 104 40.4
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 2.8e-09 65.5 105 41.9
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 4.8e-09 64.7 63 55.6
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 6.2e-09 64.3 78 46.2
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.1e-08 63.5 103 39.8
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.4e-08 63.2 96 41.7
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 3.1e-08 62.0 71 46.5
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 3.1e-08 62.0 102 39.2
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.0e-08 61.6 80 40.0
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 5.3e-08 61.2 99 35.4
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.3e-08 61.2 105 40.0
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.2e-07 60.1 105 39.0
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 1.2e-07 60.1 107 37.4
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.5e-07 59.7 101 37.6
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 2.6e-07 58.9 61 50.8
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.6e-07 58.9 96 40.6
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 3.4e-07 58.5 71 52.1
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 4.5e-07 58.2 90 40.0
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 5.8e-07 57.8 82 43.9
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 5.8e-07 57.8 61 50.8
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 7.6e-07 57.4 73 47.9
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 9.9e-07 57.0 99 39.4
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.3e-06 56.6 101 36.6
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.3e-06 56.6 101 36.6
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.3e-06 56.6 101 36.6
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 1.7e-06 56.2 101 36.6
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.7e-06 56.2 101 35.6
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 2.2e-06 55.8 70 45.7
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 2.9e-06 55.5 70 47.1
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 2.9e-06 55.5 101 36.6
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 2.9e-06 55.5 101 36.6
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 2.9e-06 55.5 101 36.6
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 2.9e-06 55.5 101 36.6
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 3.8e-06 55.1 70 47.1
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 4.9e-06 54.7 103 38.8
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 4.9e-06 54.7 98 39.8
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 6.4e-06 54.3 71 45.1
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 6.4e-06 54.3 71 45.1
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 6.4e-06 54.3 71 45.1
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 6.4e-06 54.3 94 37.2
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 8.4e-06 53.9 96 40.6
Sp1g15090 Schrenkiella parvula HOM05D009829 ORTHO05D012418 8.4e-06 53.9 102 39.2


User provided reference genes

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