Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 4.3e-73 278.1 161 100.0
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 2.0e-62 242.7 158 88.6
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 2.9e-61 238.8 136 86.8
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 8.4e-61 237.3 135 88.1
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 6.0e-51 204.5 126 82.5
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.9e-49 199.5 132 78.0
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 9.9e-46 187.2 162 65.4
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 7.9e-43 177.6 136 69.9
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.3e-42 176.8 121 72.7
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 2.1e-40 169.5 125 70.4
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 2.1e-40 169.5 125 70.4
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 4.8e-40 168.3 122 68.9
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 6.2e-40 167.9 128 69.5
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 6.9e-39 164.5 162 56.2
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.3e-37 160.2 128 69.5
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 2.9e-37 159.1 115 66.1
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 1.0e-34 150.6 129 61.2
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 1.8e-34 149.8 130 62.3
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 3.0e-34 149.1 145 61.4
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 4.3e-33 145.2 129 62.8
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 4.3e-33 145.2 129 58.9
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 7.4e-33 144.4 126 60.3
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.2e-32 142.9 134 60.4
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 3.7e-32 142.1 140 57.9
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 6.3e-32 141.4 136 58.8
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 8.2e-32 141.0 146 60.3
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.1e-31 140.6 151 57.6
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 2.4e-31 139.4 128 60.9
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.4e-31 139.4 133 60.2
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.5e-30 136.7 133 59.4
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 2.6e-30 136.0 140 57.9
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 5.9e-30 134.8 124 59.7
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.9e-30 134.8 124 59.7
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 2.9e-29 132.5 120 62.5
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 2.9e-29 132.5 138 54.3
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 5.0e-29 131.7 122 59.0
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 5.0e-29 131.7 129 56.6
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.9e-28 129.8 134 56.7
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.9e-28 129.8 123 54.5
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.2e-28 129.0 152 52.6
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 3.2e-28 129.0 134 56.7
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 3.2e-28 129.0 124 57.3
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 4.2e-28 128.6 131 51.1
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 4.2e-28 128.6 114 61.4
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.5e-28 128.3 134 56.0
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 7.2e-28 127.9 117 57.3
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 7.2e-28 127.9 117 57.3
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 9.3e-28 127.5 135 55.6
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.1e-27 126.3 121 54.5
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 2.7e-27 125.9 149 51.7
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.7e-27 125.9 135 54.8
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 4.6e-27 125.2 126 52.4
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 6.1e-27 124.8 124 56.5
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 3.0e-26 122.5 122 55.7
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.9e-26 122.1 136 54.4
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.1e-25 120.6 132 53.8
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 1.5e-25 120.2 121 53.7
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 1.5e-25 120.2 130 52.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.9e-25 119.8 126 55.6
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.9e-25 119.8 121 55.4
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.9e-25 119.8 118 55.1
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.9e-25 119.8 118 55.1
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 2.5e-25 119.4 133 51.1
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 3.3e-25 119.0 121 54.5
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 7.4e-25 117.9 122 53.3
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 9.7e-25 117.5 118 55.1
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 3.7e-24 115.5 130 50.0
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 3.7e-24 115.5 143 48.3
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 4.8e-24 115.2 121 54.5
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 6.3e-24 114.8 143 46.2
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 6.3e-24 114.8 109 58.7
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 8.2e-24 114.4 127 51.2
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 8.2e-24 114.4 131 52.7
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.1e-23 114.0 87 71.3
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 1.1e-23 114.0 115 53.0
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 1.4e-23 113.6 135 48.9
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.4e-23 113.6 136 44.9
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.4e-23 113.6 114 54.4
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 2.4e-23 112.8 128 52.3
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.1e-23 112.5 117 52.1
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 4.1e-23 112.1 156 41.0
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 2.0e-22 109.8 124 52.4
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.6e-22 109.4 133 48.9
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 5.9e-22 108.2 114 51.8
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 1.7e-21 106.7 133 48.9
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 2.9e-21 105.9 140 49.3
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 6.5e-21 104.8 133 43.6
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 6.5e-21 104.8 132 43.2
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 6.5e-21 104.8 111 51.4
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 8.5e-21 104.4 120 51.7
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 8.5e-21 104.4 113 53.1
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 8.5e-21 104.4 112 51.8
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 1.4e-20 103.6 122 49.2
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.4e-20 103.6 132 47.7
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.4e-20 103.6 123 49.6
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 1.9e-20 103.2 121 47.9
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.9e-20 103.2 116 44.8
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.9e-20 103.2 119 47.9
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.9e-20 103.2 137 45.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 2.5e-20 102.8 135 44.4
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.5e-20 102.8 112 50.9
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 4.2e-20 102.1 116 44.8
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 4.2e-20 102.1 116 44.8
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 4.2e-20 102.1 116 43.1
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 4.2e-20 102.1 131 45.8
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 7.2e-20 101.3 135 45.2
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 9.4e-20 100.9 127 45.7
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 1.6e-19 100.1 129 42.6
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.6e-19 100.1 131 44.3
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.6e-19 100.1 103 50.5
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.7e-19 99.4 116 52.6
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 7.9e-19 97.8 128 41.4
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 7.9e-19 97.8 128 41.4
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 1.0e-18 97.4 121 44.6
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 1.0e-18 97.4 129 41.9
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 1.8e-18 96.7 117 47.0
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 3.0e-18 95.9 116 44.8
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 3.0e-18 95.9 116 44.8
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 3.0e-18 95.9 116 44.8
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 3.9e-18 95.5 121 43.8
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 3.9e-18 95.5 117 46.2
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 6.7e-18 94.7 123 48.8
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.5e-17 93.6 108 49.1
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 5.7e-17 91.7 110 48.2
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 7.4e-17 91.3 127 38.6
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.8e-16 89.4 122 44.3
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 2.8e-16 89.4 57 77.2
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 8.2e-16 87.8 126 42.9
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 1.8e-15 86.7 125 41.6
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 3.1e-15 85.9 110 46.4
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 4.5e-14 82.0 124 40.3
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 6.5e-13 78.2 125 37.6
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.5e-12 76.3 91 50.5
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 7.2e-12 74.7 72 51.4
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.0e-10 70.9 54 57.4
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 3.0e-10 69.3 134 33.6
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.0e-09 66.6 48 70.8
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 4.8e-08 62.0 92 39.1
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.1e-07 60.8 116 38.8
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.1e-07 60.8 142 35.9
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.4e-07 60.5 116 40.5
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 2.4e-07 59.7 159 28.3
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.4e-07 59.7 148 30.4
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 2.4e-07 59.7 117 33.3
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 3.1e-07 59.3 146 30.8
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 7.0e-07 58.2 89 41.6
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 9.1e-07 57.8 93 36.6
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.2e-06 57.4 143 31.5
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.2e-06 57.4 88 38.6
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 1.6e-06 57.0 77 45.5
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 2.0e-06 56.6 128 32.0
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 2.0e-06 56.6 116 38.8
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 2.0e-06 56.6 147 29.9
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.6e-06 56.2 151 29.8
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 3.5e-06 55.8 93 37.6
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 4.5e-06 55.5 128 32.0
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 4.5e-06 55.5 85 36.5
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.5e-06 55.5 119 31.9
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 5.9e-06 55.1 135 31.1
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.9e-06 55.1 148 31.8
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 5.9e-06 55.1 151 32.5
Zm00001eb126760 Zea mays HOM05D041344 ORTHO05D037183 5.9e-06 55.1 131 29.8


User provided reference genes

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