Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.2e-272 942.6 474 100.0
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.7e-218 762.7 477 84.3
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 2.9e-218 761.9 506 81.8
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 3.4e-211 738.4 417 90.2
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 7.6e-211 737.3 395 93.7
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 4.6e-208 728.0 408 90.2
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 1.3e-207 726.5 408 90.0
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 9.9e-203 710.3 424 85.1
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 5.3e-196 688.0 464 76.1
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 3.5e-192 675.2 459 75.4
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 7.9e-192 674.1 466 74.2
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 7.4e-190 667.5 444 77.7
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 1.3e-189 666.8 468 74.8
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 1.6e-189 666.4 479 75.4
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 1.4e-188 663.3 459 75.4
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 3.4e-187 658.7 398 82.2
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 7.6e-187 657.5 457 73.7
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 1.0e-186 657.1 435 77.7
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 5.0e-186 654.8 417 78.7
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.5e-185 652.5 459 73.4
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 1.2e-184 650.2 459 71.9
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 2.1e-184 649.4 448 75.2
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 2.7e-184 649.0 465 73.3
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 4.6e-184 648.3 456 73.5
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 6.1e-184 647.9 432 76.6
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 7.9e-184 647.5 402 80.3
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 1.3e-183 646.7 425 77.4
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.3e-183 646.7 428 76.2
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 3.9e-183 645.2 394 81.0
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 3.9e-183 645.2 462 72.9
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 6.7e-183 644.4 464 71.8
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 1.1e-182 643.7 503 68.2
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 2.5e-182 642.5 397 81.6
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 2.8e-181 639.0 458 73.8
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 3.7e-181 638.6 469 70.8
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 4.8e-181 638.3 386 82.4
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 6.3e-181 637.9 464 71.6
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.4e-180 636.7 451 73.2
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 4.1e-180 635.2 386 81.3
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 9.1e-180 634.0 472 71.2
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 1.2e-176 623.6 419 75.4
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 7.9e-176 620.9 436 73.9
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 1.4e-175 620.2 456 70.6
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.3e-173 613.6 381 80.1
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 2.2e-173 612.8 394 77.7
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 1.1e-172 610.5 444 70.9
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 2.4e-172 609.4 443 72.7
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 9.1e-172 607.4 394 76.9
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.5e-171 606.7 400 75.8
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 2.0e-171 606.3 394 76.9
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 8.5e-170 600.9 394 76.4
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 8.5e-170 600.9 402 75.6
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 1.1e-169 600.5 374 79.4
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 9.4e-169 597.4 437 70.3
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.6e-168 596.7 429 72.0
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 2.3e-167 592.8 432 70.8
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 5.2e-167 591.7 458 67.7
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 5.2e-167 591.7 572 58.9
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 6.7e-167 591.3 425 71.8
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 2.0e-166 589.7 386 76.4
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 3.3e-166 589.0 429 71.6
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 5.7e-166 588.2 402 73.9
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 5.7e-166 588.2 474 65.8
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 2.2e-165 586.3 496 64.1
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 2.8e-165 585.9 428 72.2
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 2.8e-165 585.9 428 72.4
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 4.1e-164 582.0 436 70.0
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 3.5e-163 578.9 398 74.6
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 6.5e-162 574.7 354 80.5
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 2.7e-160 569.3 387 74.9
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.8e-157 559.3 446 67.3
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 3.7e-157 558.9 464 64.4
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 4.8e-157 558.5 497 62.8
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 6.5e-154 548.1 447 63.8
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.8e-151 540.0 347 79.3
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 2.8e-149 532.7 303 91.1
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 2.8e-149 532.7 439 65.8
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 3.8e-146 522.3 399 67.9
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.5e-145 520.4 458 64.4
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 4.2e-145 518.8 405 65.2
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 7.2e-145 518.1 391 68.3
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 2.1e-144 516.5 400 68.0
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 2.8e-144 516.2 434 65.0
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 9.8e-142 507.7 446 63.5
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.8e-141 506.1 391 68.5
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 8.3e-141 504.6 384 66.4
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 1.8e-140 503.4 272 93.8
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 1.0e-138 497.7 457 58.9
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.5e-137 493.8 455 62.0
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 4.3e-137 492.3 358 70.9
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 9.8e-134 481.1 296 81.1
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 9.2e-124 448.0 360 66.4
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 1.5e-121 440.7 337 68.5
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.7e-117 427.2 407 55.0
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.3e-114 417.5 261 81.6
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 2.2e-109 400.2 399 54.4
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 7.1e-108 395.2 461 49.5
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 5.3e-95 352.4 240 78.8
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 2.4e-92 343.6 252 77.4
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 4.3e-89 332.8 247 72.9
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 1.8e-87 327.4 201 83.1
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 7.9e-83 312.0 541 39.0
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 1.8e-82 310.8 203 73.9
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 3.3e-81 306.6 189 85.2
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.4e-79 301.2 257 67.3
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.5e-78 297.7 256 67.6
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.3e-73 280.0 185 72.4
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 5.7e-73 279.3 173 79.8
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.2e-72 277.3 185 70.8
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 8.5e-69 265.4 145 91.0
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 1.0e-66 258.5 166 79.5
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 5.7e-65 252.7 375 44.8
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 9.7e-65 251.9 147 84.4
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 1.3e-64 251.5 155 81.9
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 9.4e-60 235.3 137 82.5
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 7.9e-59 232.3 216 61.1
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 7.9e-59 232.3 216 61.1
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 7.9e-59 232.3 216 61.1
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 2.2e-56 224.2 213 62.9
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.4e-55 220.7 162 68.5
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.8e-42 177.9 102 86.3
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.0e-42 177.2 149 64.4
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.3e-40 171.8 126 66.7
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 3.2e-36 157.1 92 82.6
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 1.8e-34 151.4 84 88.1
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 6.8e-34 149.4 144 54.2
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 1.2e-30 138.7 124 62.1
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 1.3e-29 135.2 181 50.3
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 9.5e-28 129.0 80 75.0
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 4.7e-27 126.7 99 67.7
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 1.8e-26 124.8 99 66.7
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 6.8e-26 122.9 74 81.1
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 3.5e-22 110.5 58 91.4
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.9e-21 107.5 86 62.8
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 9.5e-20 102.4 62 79.0
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 1.0e-18 99.0 181 38.7
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 2.3e-10 71.2 73 49.3
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 6.4e-08 63.2 151 33.1
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 3.2e-07 60.8 132 34.8
Medtr2g015770 Medicago truncatula HOM05D005057 ORTHO05D266029 3.5e-06 57.4 36 80.6


User provided reference genes

Program Settings