Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 1.9e-37 158.7 80 100.0
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 9.7e-34 146.4 82 91.5
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 5.0e-30 134.0 66 95.5
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 1.1e-29 132.9 65 95.4
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 3.2e-29 131.3 66 92.4
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 3.2e-29 131.3 66 92.4
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 7.2e-29 130.2 66 90.9
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 7.2e-29 130.2 65 93.8
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 9.4e-29 129.8 66 92.4
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 9.4e-29 129.8 66 92.4
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 1.6e-28 129.0 66 89.4
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 2.7e-28 128.3 66 90.9
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 2.7e-28 128.3 64 93.8
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 4.6e-28 127.5 66 90.9
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.0e-27 126.3 64 92.2
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 5.1e-27 124.0 67 88.1
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 2.2e-25 118.6 64 87.5
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 2.2e-25 118.6 64 84.4
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 6.3e-25 117.1 76 69.7
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 1.4e-24 115.9 64 84.4
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.8e-24 115.5 64 84.4
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 1.8e-24 115.5 64 82.8
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 9.1e-24 113.2 69 78.3
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 9.1e-24 113.2 69 78.3
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.2e-23 112.8 64 82.8
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 1.2e-23 112.8 80 71.2
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 1.5e-23 112.5 64 81.2
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 2.0e-23 112.1 64 85.9
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 2.0e-23 112.1 65 81.5
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 2.0e-23 112.1 68 80.9
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 2.6e-23 111.7 80 67.5
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 2.6e-23 111.7 64 81.2
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 2.6e-23 111.7 69 75.4
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 2.6e-23 111.7 64 81.2
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 2.6e-23 111.7 64 82.8
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 3.4e-23 111.3 80 72.5
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.4e-23 111.3 64 81.2
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.4e-23 111.3 64 81.2
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.4e-23 111.3 64 81.2
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.4e-23 111.3 58 87.9
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 3.4e-23 111.3 67 76.1
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 3.4e-23 111.3 66 77.3
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 4.5e-23 110.9 64 79.7
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 4.5e-23 110.9 66 78.8
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 4.5e-23 110.9 66 78.8
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 4.5e-23 110.9 66 78.8
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 4.5e-23 110.9 64 79.7
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 4.5e-23 110.9 64 79.7
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 5.9e-23 110.5 74 70.3
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 5.9e-23 110.5 74 70.3
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 5.9e-23 110.5 64 79.7
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 5.9e-23 110.5 69 75.4
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 7.7e-23 110.2 64 78.1
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 1.0e-22 109.8 66 77.3
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 1.0e-22 109.8 66 77.3
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 1.0e-22 109.8 66 77.3
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.0e-22 109.8 64 79.7
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.0e-22 109.8 58 86.2
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 1.3e-22 109.4 58 89.7
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 1.3e-22 109.4 59 84.7
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.3e-22 109.4 69 73.9
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 1.7e-22 109.0 74 68.9
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 1.7e-22 109.0 74 68.9
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.7e-22 109.0 59 84.7
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 1.7e-22 109.0 59 84.7
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 2.9e-22 108.2 66 78.8
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 2.9e-22 108.2 66 78.8
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.9e-22 108.2 58 82.8
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 3.8e-22 107.8 58 84.5
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 3.8e-22 107.8 66 77.3
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 3.8e-22 107.8 58 81.0
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 5.0e-22 107.5 58 86.2
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 8.5e-22 106.7 66 75.8
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 8.5e-22 106.7 66 75.8
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 8.5e-22 106.7 66 75.8
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 1.4e-21 105.9 58 81.0
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.4e-21 105.9 64 73.4
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 1.9e-21 105.5 64 78.1
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 1.9e-21 105.5 68 72.1
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.9e-21 105.5 63 74.6
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.9e-21 105.5 63 74.6
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 2.5e-21 105.1 64 75.0
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 3.2e-21 104.8 64 71.9
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 3.2e-21 104.8 68 73.5
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.2e-21 104.8 58 79.3
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.2e-21 104.8 58 79.3
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.2e-21 104.8 58 79.3
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.2e-21 104.8 58 79.3
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.2e-21 104.8 64 71.9
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 3.2e-21 104.8 58 79.3
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 4.2e-21 104.4 64 75.0
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 7.2e-21 103.6 58 79.3
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.2e-20 102.8 58 82.8
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.6e-20 102.4 61 80.3
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.6e-20 102.4 61 80.3
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 2.1e-20 102.1 58 82.8
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 2.1e-20 102.1 64 73.4
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 2.7e-20 101.7 78 64.1
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 3.6e-20 101.3 63 73.0
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 4.7e-20 100.9 66 71.2
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 1.8e-19 99.0 64 68.8
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 6.7e-19 97.1 58 74.1
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 8.8e-19 96.7 71 70.4
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 4.4e-18 94.4 55 80.0
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 7.4e-18 93.6 50 84.0
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 1.7e-17 92.4 80 60.0
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 1.7e-17 92.4 55 74.5
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 8.2e-17 90.1 49 81.6
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 8.2e-17 90.1 64 68.8
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 3.1e-16 88.2 65 64.6
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 2.2e-09 65.5 51 62.7
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.6e-07 59.3 58 46.6
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 6.5e-06 53.9 70 45.7


User provided reference genes

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