Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 0.0e+00 1204.9 615 100.0
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 4.6e-301 1037.3 615 85.7
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 4.4e-267 924.5 617 78.8
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 1.4e-257 892.9 608 76.0
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 3.1e-257 891.7 608 75.7
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 8.8e-252 873.6 615 72.8
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 2.2e-250 869.0 609 72.9
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 2.5e-238 828.9 606 72.3
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 7.0e-233 810.8 487 86.0
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 2.8e-221 772.3 620 66.3
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 7.0e-217 757.7 622 65.4
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 1.4e-201 706.8 612 60.3
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 1.9e-198 696.4 600 61.0
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 9.6e-198 694.1 624 60.6
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 7.6e-195 684.5 615 59.3
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 2.9e-194 682.6 615 58.2
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 1.1e-193 680.6 612 59.0
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 2.4e-193 679.5 613 58.7
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 1.7e-191 673.3 407 84.3
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 3.9e-191 672.2 625 57.6
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 1.1e-188 664.1 555 60.7
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 2.0e-187 659.8 588 57.0
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 4.9e-186 655.2 620 55.3
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 2.4e-185 652.9 605 56.4
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 9.3e-185 651.0 623 55.9
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 3.5e-184 649.0 605 55.5
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 6.0e-184 648.3 604 56.6
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 3.9e-183 645.6 615 56.9
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 5.1e-183 645.2 625 55.8
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 8.7e-183 644.4 606 55.9
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 1.5e-182 643.7 621 55.9
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 7.4e-182 641.3 591 54.7
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 1.5e-179 633.6 621 54.6
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 4.5e-179 632.1 620 54.2
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 9.9e-179 630.9 611 55.8
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 3.8e-178 629.0 608 54.8
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 3.3e-174 615.9 599 53.9
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 2.1e-173 613.2 611 53.5
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 4.8e-173 612.1 568 56.5
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 1.4e-172 610.5 659 50.7
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 2.4e-172 609.8 623 53.5
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 3.1e-172 609.4 581 54.0
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 1.2e-171 607.4 571 56.4
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 2.0e-171 606.7 626 54.6
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 4.5e-171 605.5 621 55.6
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 2.2e-170 603.2 623 52.8
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 3.8e-170 602.4 570 56.1
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 1.1e-169 600.9 623 53.0
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.1e-169 600.9 612 55.1
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 7.9e-168 594.7 624 52.2
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 7.9e-168 594.7 624 51.8
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 1.3e-167 594.0 624 52.4
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 2.3e-167 593.2 623 52.3
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 5.1e-167 592.0 617 51.9
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 8.7e-167 591.3 624 52.4
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 1.9e-166 590.1 624 52.2
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 3.3e-166 589.3 626 51.8
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 2.2e-165 586.6 619 50.9
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 1.4e-164 583.9 643 50.2
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 2.9e-162 576.2 581 51.3
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 1.4e-161 573.9 605 50.7
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 7.9e-160 568.2 649 50.1
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 2.3e-159 566.6 601 50.4
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 3.3e-158 562.8 612 49.2
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 4.3e-158 562.4 623 48.5
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 1.7e-157 560.5 540 55.6
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 6.3e-157 558.5 608 49.2
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 1.2e-152 544.3 677 46.2
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 2.1e-152 543.5 569 50.6
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.8e-151 540.4 571 50.3
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 1.8e-151 540.4 719 43.5
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 3.9e-151 539.3 450 59.8
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 3.3e-150 536.2 571 49.6
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 1.3e-149 534.3 625 48.5
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 4.1e-148 529.3 718 42.6
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 1.0e-146 524.6 612 46.9
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 8.5e-146 521.5 633 46.0
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 9.4e-137 491.5 431 58.7
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 9.4e-137 491.5 550 47.5
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 5.7e-134 482.3 456 54.4
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 1.4e-132 477.6 454 57.7
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 4.1e-132 476.1 421 58.7
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 1.0e-130 471.5 421 56.3
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 1.6e-128 464.2 622 43.2
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 8.0e-128 461.8 577 44.2
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 1.4e-127 461.1 595 43.9
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 3.4e-126 456.4 596 43.5
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 3.5e-123 446.4 597 44.9
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 1.9e-121 440.7 602 44.5
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 4.9e-117 426.0 414 53.9
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 1.5e-113 414.5 416 51.9
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 2.1e-112 410.6 448 52.0
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 2.3e-111 407.1 499 44.1
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 1.5e-110 404.4 417 51.1
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 1.3e-109 401.4 599 40.1
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 3.7e-109 399.8 400 54.5
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 3.2e-108 396.7 630 40.3
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 4.0e-103 379.8 464 47.6
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 1.6e-99 367.9 207 89.4
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 1.9e-92 344.4 578 37.0
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 3.9e-90 336.7 193 88.1
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.4e-87 327.4 656 33.4
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 1.1e-84 318.5 644 34.3
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 4.3e-73 280.0 295 47.8
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 7.9e-59 232.6 600 28.5
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 2.1e-56 224.6 233 50.2
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.8e-42 178.3 264 38.6
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 5.1e-42 176.8 634 26.3
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 1.5e-33 148.7 217 40.1
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 5.7e-25 120.2 208 34.1
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 7.4e-25 119.8 302 31.5
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 7.4e-25 119.8 154 40.9
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 4.0e-18 97.4 91 57.1
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 4.8e-16 90.5 375 25.9
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 9.1e-15 86.3 65 63.1
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 2.0e-14 85.1 165 39.4
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 3.5e-14 84.3 67 61.2
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 2.5e-12 78.2 49 71.4
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 7.2e-12 76.6 89 48.3
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.1e-11 75.1 73 54.8
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 5.4e-07 60.5 72 47.2
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 5.4e-07 60.5 72 47.2


User provided reference genes

Program Settings