Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 8.1e-34 146.4 67 100.0
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.4e-22 109.0 65 81.5
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.4e-22 109.0 66 80.3
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 5.4e-22 107.1 63 82.5
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 8.1e-18 93.2 65 72.3
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 8.1e-18 93.2 50 84.0
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 3.1e-17 91.3 65 69.2
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 3.1e-17 91.3 67 70.1
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.2e-16 89.4 64 70.3
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.2e-16 89.4 67 68.7
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 1.5e-16 89.0 66 69.7
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.0e-16 88.6 62 71.0
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 3.4e-16 87.8 63 66.7
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 3.4e-16 87.8 65 67.7
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 9.9e-16 86.3 46 87.0
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 2.2e-15 85.1 63 65.1
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.1e-14 82.8 65 70.8
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 4.2e-14 80.9 61 65.6
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 4.6e-13 77.4 62 64.5
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 7.9e-13 76.6 65 61.5
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.8e-12 75.5 63 71.4
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.5e-11 72.4 67 61.2
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 1.9e-11 72.0 71 59.2
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.3e-11 71.2 57 66.7
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 3.3e-11 71.2 54 63.0
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 5.6e-11 70.5 60 66.7
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 7.4e-11 70.1 66 57.6
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 9.6e-11 69.7 67 58.2
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 9.6e-11 69.7 67 58.2
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 9.6e-11 69.7 67 55.2
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 1.3e-10 69.3 64 59.4
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 1.6e-10 68.9 64 57.8
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 2.1e-10 68.6 62 54.8
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.1e-10 68.6 62 54.8
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.1e-10 68.6 62 54.8
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 2.1e-10 68.6 67 58.2
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.8e-10 68.2 74 55.4
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.8e-10 68.2 62 54.8
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 3.7e-10 67.8 58 60.3
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 4.8e-10 67.4 61 59.0
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 6.2e-10 67.0 69 59.4
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 8.2e-10 66.6 66 54.5
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-09 66.2 52 61.5
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.1e-09 66.2 58 58.6
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 1.1e-09 66.2 51 60.8
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 1.4e-09 65.9 64 56.2
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 1.4e-09 65.9 65 58.5
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.4e-09 65.9 65 50.8
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.4e-09 65.9 64 54.7
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 1.8e-09 65.5 66 51.5
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.8e-09 65.5 47 70.2
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.8e-09 65.5 65 56.9
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 2.4e-09 65.1 58 58.6
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.4e-09 65.1 66 59.1
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 2.4e-09 65.1 66 54.5
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 2.4e-09 65.1 63 58.7
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.4e-09 65.1 64 57.8
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 3.1e-09 64.7 69 56.5
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 4.0e-09 64.3 49 63.3
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 4.0e-09 64.3 66 56.1
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 5.3e-09 63.9 67 50.7
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 5.3e-09 63.9 60 53.3
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 5.3e-09 63.9 63 58.7
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 5.3e-09 63.9 66 53.0
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 6.9e-09 63.5 65 56.9
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 1.5e-08 62.4 62 54.8
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.5e-08 62.4 66 54.5
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.5e-08 62.4 66 50.0
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 1.5e-08 62.4 69 50.7
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.0e-08 62.0 67 53.7
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.0e-08 62.0 67 53.7
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 2.6e-08 61.6 56 57.1
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 3.4e-08 61.2 67 55.2
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 3.4e-08 61.2 62 53.2
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 3.4e-08 61.2 62 53.2
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 5.8e-08 60.5 64 50.0
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 5.8e-08 60.5 66 56.1
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 7.6e-08 60.1 64 56.2
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 7.6e-08 60.1 54 61.1
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 1.3e-07 59.3 44 68.2
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.7e-07 58.9 56 57.1
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.2e-07 58.5 48 58.3
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.2e-07 58.5 65 50.8
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.2e-07 58.5 66 47.0
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 2.9e-07 58.2 55 60.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.9e-07 58.2 66 47.0
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 2.9e-07 58.2 66 47.0
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.8e-07 57.8 55 60.0
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 4.9e-07 57.4 54 53.7
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.9e-06 55.5 55 58.2
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 2.5e-06 55.1 52 57.7
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 2.5e-06 55.1 55 58.2
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.5e-06 55.1 46 58.7
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.2e-06 54.7 46 65.2
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 3.2e-06 54.7 63 50.8
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 3.2e-06 54.7 61 50.8
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 4.2e-06 54.3 62 46.8
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 5.5e-06 53.9 65 52.3
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 7.1e-06 53.5 63 46.0
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 7.1e-06 53.5 55 56.4
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.3e-06 53.1 66 54.5
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.3e-06 53.1 66 54.5
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 9.3e-06 53.1 65 49.2


User provided reference genes

Program Settings