Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 5.2e-135 484.6 277 100.0
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 8.1e-104 380.9 278 73.0
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 9.9e-86 320.9 277 70.0
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 4.6e-83 312.0 281 64.8
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 1.0e-82 310.8 274 64.2
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 2.3e-82 309.7 275 64.4
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 8.7e-82 307.8 265 62.6
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 5.6e-81 305.1 274 63.5
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 5.3e-79 298.5 277 68.6
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 8.4e-77 291.2 276 61.6
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 3.3e-73 279.3 267 59.6
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 5.5e-60 235.3 251 51.8
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 2.1e-59 233.4 269 49.1
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 2.5e-57 226.5 248 49.2
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 3.3e-57 226.1 257 50.2
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 4.3e-57 225.7 267 47.2
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 2.8e-56 223.0 244 49.2
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 3.7e-56 222.6 248 49.6
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 1.4e-55 220.7 248 49.6
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 1.2e-54 217.6 286 43.4
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 1.2e-54 217.6 278 46.8
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 1.5e-54 217.2 259 45.2
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 3.8e-53 212.6 287 43.2
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 8.5e-53 211.5 270 44.8
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 2.7e-51 206.5 244 52.5
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 6.1e-51 205.3 272 44.1
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 1.4e-50 204.1 270 42.2
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 1.4e-50 204.1 270 42.2
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 1.8e-50 203.8 245 46.9
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 3.0e-50 203.0 245 45.3
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 3.9e-50 202.6 275 42.9
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 8.8e-50 201.4 197 54.8
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.0e-49 200.3 245 46.1
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 4.8e-48 195.7 252 44.8
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.1e-47 194.5 253 45.1
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 1.2e-46 191.0 248 43.1
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 6.5e-45 185.3 246 43.5
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 3.2e-44 183.0 286 40.2
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 4.2e-44 182.6 250 42.8
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 1.6e-43 180.6 232 42.7
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 4.7e-43 179.1 246 43.5
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 3.9e-42 176.0 229 44.5
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 6.7e-42 175.3 272 38.2
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 6.7e-42 175.3 272 38.2
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 4.4e-41 172.6 257 41.2
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 7.4e-41 171.8 248 41.1
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 7.4e-41 171.8 285 36.5
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 1.3e-40 171.0 274 40.9
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 8.2e-40 168.3 175 50.9
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 1.4e-39 167.5 192 46.9
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 2.0e-38 163.7 277 39.7
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 3.5e-38 162.9 284 38.4
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 5.9e-38 162.2 248 39.5
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 7.7e-38 161.8 278 40.6
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 2.9e-37 159.8 189 45.5
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 5.0e-37 159.1 302 34.4
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 6.5e-37 158.7 281 38.1
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 1.9e-36 157.1 282 35.8
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 4.2e-36 156.0 198 45.5
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 2.1e-35 153.7 248 38.7
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 3.6e-35 152.9 271 33.6
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 6.1e-35 152.1 293 35.8
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 1.8e-34 150.6 270 35.9
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 1.2e-33 147.9 286 36.4
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 2.8e-32 143.3 232 37.9
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 4.8e-32 142.5 232 37.5
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 8.2e-32 141.7 271 36.5
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 1.4e-31 141.0 230 37.8
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 1.4e-31 141.0 255 38.0
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 1.4e-31 141.0 244 37.7
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 1.8e-31 140.6 277 39.0
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 2.4e-31 140.2 269 33.5
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 5.9e-30 135.6 227 36.6
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 5.9e-30 135.6 268 34.3
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 3.8e-29 132.9 244 35.2
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 6.5e-29 132.1 272 34.6
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 8.5e-29 131.7 258 35.3
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.5e-28 131.0 257 31.9
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 7.2e-28 128.6 270 33.0
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.7e-27 126.7 172 44.2
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 6.1e-27 125.6 187 38.5
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.4e-26 124.4 204 36.8
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 5.7e-25 119.0 268 31.7
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 7.5e-25 118.6 216 31.5
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 7.5e-25 118.6 226 35.0
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 5.4e-23 112.5 261 31.0
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 7.0e-23 112.1 157 41.4
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 3.5e-22 109.8 200 34.5
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 3.5e-22 109.8 200 34.5
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 7.2e-20 102.1 147 39.5
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 1.6e-19 100.9 137 40.1
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 4.7e-19 99.4 313 24.3
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 2.4e-15 87.0 93 44.1
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 4.1e-15 86.3 112 44.6
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 5.4e-15 85.9 91 51.6
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 7.0e-15 85.5 277 26.7
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 7.7e-14 82.0 219 28.8
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 1.7e-13 80.9 302 24.8
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 3.8e-13 79.7 210 26.7
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.2e-11 74.7 59 59.3
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.2e-11 74.7 59 59.3
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.6e-11 73.2 58 58.6
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 1.8e-10 70.9 143 34.3
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 1.2e-06 58.2 64 42.2
Lsat_1_v5_gn_7_55401 Lactuca sativa HOM05D002665 ORTHO05D002991 5.9e-06 55.8 59 42.4


User provided reference genes

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