Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g012390 Medicago truncatula HOM05D001548 ORTHO05D003922 6.2e-42 173.7 88 100.0
Medtr4g050710 Medicago truncatula HOM05D001548 ORTHO05D003922 4.3e-27 124.4 67 94.0
Medtr2g012420 Medicago truncatula HOM05D001548 ORTHO05D003922 4.5e-24 114.4 61 95.1
Ca_00270_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 8.4e-23 110.2 61 91.8
Medtr2g012380 Medicago truncatula HOM05D001548 ORTHO05D003922 1.4e-22 109.4 61 91.8
Medtr4g050760 Medicago truncatula HOM05D001548 ORTHO05D003922 1.4e-22 109.4 61 91.8
FvH4_3g04340 Fragaria vesca HOM05D001548 ORTHO05D003922 1.9e-22 109.0 61 90.2
Lalb_Chr20g0122221 Lupinus albus HOM05D001548 ORTHO05D003922 1.9e-22 109.0 61 90.2
RcHm_v2.0_Chr1g0318171 Rosa chinensis HOM05D001548 ORTHO05D003922 7.1e-22 107.1 61 88.5
FAN11G1894 Fragaria x ananassa HOM05D001548 ORTHO05D003922 9.3e-22 106.7 61 88.5
FAN25G1077 Fragaria x ananassa HOM05D001548 ORTHO05D003922 9.3e-22 106.7 61 88.5
RcHm_v2.0_Chr5g0006721 Rosa chinensis HOM05D001548 ORTHO05D003922 9.3e-22 106.7 61 88.5
ClCG01G022620 Citrullus lanatus HOM05D001548 ORTHO05D003922 1.2e-21 106.3 61 83.6
Ca_00271_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 1.6e-21 105.9 61 86.9
VMungo0540G2381 Vigna mungo HOM05D001548 ORTHO05D003922 1.6e-21 105.9 61 85.2
CsaV3_1G014810 Cucumis sativus L. HOM05D001548 ORTHO05D003922 2.7e-21 105.1 61 82.0
arahy.Tifrunner.gnm1.ann1.B92LJH Arachis hypogaea HOM05D001548 ORTHO05D003922 3.5e-21 104.8 61 85.2
arahy.Tifrunner.gnm1.ann1.K5KWWW Arachis hypogaea HOM05D001548 ORTHO05D003922 3.5e-21 104.8 61 85.2
FvH4_3g04320 Fragaria vesca HOM05D001548 ORTHO05D003922 3.5e-21 104.8 61 86.9
Psat1g207880 Pisum sativum HOM05D001548 ORTHO05D003922 3.5e-21 104.8 61 85.2
RcHm_v2.0_Chr5g0006701 Rosa chinensis HOM05D001548 ORTHO05D003922 3.5e-21 104.8 61 86.9
FAN21G2301 Fragaria x ananassa HOM05D001548 ORTHO05D003922 4.6e-21 104.4 61 86.9
HanXRQChr17g0555731 Helianthus annuus HOM05D001548 ORTHO05D003922 4.6e-21 104.4 61 80.3
MELO3C004714.2 Cucumis melo HOM05D001548 ORTHO05D003922 6.1e-21 104.0 61 82.0
Lalb_Chr15g0090061 Lupinus albus HOM05D001548 ORTHO05D003922 7.9e-21 103.6 61 85.2
Sed0019244 Sechium edule HOM05D001548 ORTHO05D003922 7.9e-21 103.6 61 82.0
FAN11G0633 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.0e-20 103.2 61 85.2
Oeu053926.1 Olea europaea HOM05D001548 ORTHO05D003922 1.0e-20 103.2 61 82.0
Oeu053927.1 Olea europaea HOM05D001548 ORTHO05D003922 1.0e-20 103.2 61 82.0
EL10Ac8g20626 Beta vulgaris HOM05D001548 ORTHO05D003922 1.3e-20 102.8 61 82.0
Hma1.2p1_0144F.1_g064920 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 1.8e-20 102.4 61 80.3
Hma1.2p1_0144F.1_g064936 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 1.8e-20 102.4 61 80.3
CsaV3_6G049820 Cucumis sativus L. HOM05D001548 ORTHO05D003922 2.3e-20 102.1 61 78.7
FAN21G4059 Fragaria x ananassa HOM05D001548 ORTHO05D003922 2.3e-20 102.1 61 83.6
Atru.chr10.1985 Acer truncatum HOM05D001548 ORTHO05D003922 3.0e-20 101.7 61 80.3
Lsat_1_v5_gn_4_57401 Lactuca sativa HOM05D001548 ORTHO05D003922 3.0e-20 101.7 61 78.7
unitig_748.g7573 Utricularia gibba HOM05D001548 ORTHO05D003922 3.0e-20 101.7 61 78.7
Prupe.4G038700 Prunus persica HOM05D001548 ORTHO05D003922 3.9e-20 101.3 61 82.0
Prupe.7G059300 Prunus persica HOM05D001548 ORTHO05D003922 3.9e-20 101.3 61 78.7
MSTRG.15920 Avicennia marina HOM05D001548 ORTHO05D003922 5.1e-20 100.9 61 80.3
Cfa000369 Carpinus fangiana HOM05D001548 ORTHO05D003922 5.1e-20 100.9 61 82.0
ECA234G0352 Erigeron canadensis HOM05D001548 ORTHO05D003922 5.1e-20 100.9 61 80.3
Eucgr.A02652 Eucalyptus grandis HOM05D001548 ORTHO05D003922 5.1e-20 100.9 61 82.0
Manes.16G022100 Manihot esculenta HOM05D001548 ORTHO05D003922 5.1e-20 100.9 61 80.3
Prupe.7G059000 Prunus persica HOM05D001548 ORTHO05D003922 5.1e-20 100.9 61 78.7
Rhsim13G0174500 Rhododendron simsii HOM05D001548 ORTHO05D003922 5.1e-20 100.9 61 82.0
Sed0014396 Sechium edule HOM05D001548 ORTHO05D003922 5.1e-20 100.9 60 81.7
Haze_06554 Corylus avellana HOM05D001548 ORTHO05D003922 6.7e-20 100.5 61 82.0
Eucgr.A02651 Eucalyptus grandis HOM05D001548 ORTHO05D003922 6.7e-20 100.5 61 80.3
Hma1.2p1_0144F.1_g064910 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 6.7e-20 100.5 61 80.3
PSO541G1752 Papaver somniferum HOM05D001548 ORTHO05D003922 6.7e-20 100.5 61 78.7
Phvul.006G190900 Phaseolus vulgaris HOM05D001548 ORTHO05D003922 6.7e-20 100.5 61 80.3
CANSAT56G2247 Cannabis sativa HOM05D001548 ORTHO05D003922 8.7e-20 100.1 61 78.7
Cc02_g12600 Coffea canephora HOM05D001548 ORTHO05D003922 8.7e-20 100.1 61 82.0
DCAR_008065 Daucus carota HOM05D001548 ORTHO05D003922 8.7e-20 100.1 61 77.0
Lj6g0026396 Lotus japonicus HOM05D001548 ORTHO05D003922 8.7e-20 100.1 61 80.3
SGA_v2.0_scaffold7G03963 Striga asiatica HOM05D001548 ORTHO05D003922 8.7e-20 100.1 61 80.3
TAR626G1284 Trochodendron aralioides HOM05D001548 ORTHO05D003922 8.7e-20 100.1 61 82.0
AUR62014739 Chenopodium quinoa HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 82.0
AUR62016918 Chenopodium quinoa HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 80.3
Dinv39801 Davidia involucrata HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 82.0
Migut.M01197 Erythranthe guttata HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 78.7
FAN25G3513 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 82.0
Glyma.15G068300 Glycine max HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 82.0
Nitab4.5_0001170g0200 Nicotiana tabacum HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 78.7
PSO675G8570 Papaver somniferum HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 78.7
PGSC0003DMG400022418 Solanum tuberosum HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 78.7
Thecc.06G196700 Theobroma cacao HOM05D001548 ORTHO05D003922 1.1e-19 99.8 61 78.7
Aqoxy1G00822 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.5e-19 99.4 61 80.3
Aqoxy1G02697 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.5e-19 99.4 61 80.3
CAN.G1181.11 Capsicum annuum HOM05D001548 ORTHO05D003922 1.5e-19 99.4 61 80.3
MD12G1074500 Malus domestica HOM05D001548 ORTHO05D003922 1.5e-19 99.4 61 78.7
vmacro22278 Vaccinium macrocarpon HOM05D001548 ORTHO05D003922 1.5e-19 99.4 61 80.3
QL05p081676 Quercus lobata HOM05D001548 ORTHO05D003922 1.9e-19 99.0 61 80.3
CSS0049882 Camellia sinensis var. sinensis HOM05D001548 ORTHO05D003922 2.5e-19 98.6 61 80.3
Eucgr.D00699 Eucalyptus grandis HOM05D001548 ORTHO05D003922 2.5e-19 98.6 61 82.0
Eucgr.L02843 Eucalyptus grandis HOM05D001548 ORTHO05D003922 2.5e-19 98.6 61 82.0
TWI63G1036 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 2.5e-19 98.6 61 75.4
Ciclev10015925m.g Citrus clementina HOM05D001548 ORTHO05D003922 3.3e-19 98.2 61 78.7
Peaxi162Scf00527g00322 Petunia axillaris HOM05D001548 ORTHO05D003922 3.3e-19 98.2 61 77.0
Rhsim13G0174400 Rhododendron simsii HOM05D001548 ORTHO05D003922 3.3e-19 98.2 61 77.0
Solyc02g078940.3 Solanum lycopersicum HOM05D001548 ORTHO05D003922 3.3e-19 98.2 61 77.0
Sopen02g023750 Solanum pennellii HOM05D001548 ORTHO05D003922 3.3e-19 98.2 61 77.0
TWI63G0457 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 3.3e-19 98.2 61 78.7
Nitab4.5_0003676g0090 Nicotiana tabacum HOM05D001548 ORTHO05D003922 4.3e-19 97.8 60 78.3
arahy.Tifrunner.gnm1.ann1.F566GJ Arachis hypogaea HOM05D001548 ORTHO05D003922 5.7e-19 97.4 61 75.4
Gohir.A10G019800 Gossypium hirsutum HOM05D001548 ORTHO05D003922 5.7e-19 97.4 61 77.0
Gohir.D10G020600 Gossypium hirsutum HOM05D001548 ORTHO05D003922 5.7e-19 97.4 61 77.0
Gorai.011G021700 Gossypium raimondii HOM05D001548 ORTHO05D003922 5.7e-19 97.4 61 77.0
Manes.16G022000 Manihot esculenta HOM05D001548 ORTHO05D003922 5.7e-19 97.4 61 77.0
Potri.004G036100 Populus trichocarpa HOM05D001548 ORTHO05D003922 5.7e-19 97.4 61 78.7
PGR004G2268 Punica granatum HOM05D001548 ORTHO05D003922 5.7e-19 97.4 61 80.3
Sabra04G0022000 Salix brachista HOM05D001548 ORTHO05D003922 5.7e-19 97.4 61 78.7
Hund23633 Selenicereus undatus HOM05D001548 ORTHO05D003922 5.7e-19 97.4 60 78.3
Atru.chr10.1984 Acer truncatum HOM05D001548 ORTHO05D003922 7.4e-19 97.1 61 77.0
Actinidia05591 Actinidia chinensis HOM05D001548 ORTHO05D003922 7.4e-19 97.1 61 78.7
Cfa000368 Carpinus fangiana HOM05D001548 ORTHO05D003922 7.4e-19 97.1 61 78.7
COL.COLO4_31559 Corchorus olitorius HOM05D001548 ORTHO05D003922 7.4e-19 97.1 61 77.0
Haze_06555 Corylus avellana HOM05D001548 ORTHO05D003922 7.4e-19 97.1 61 78.7
MELO3C007314.2 Cucumis melo HOM05D001548 ORTHO05D003922 7.4e-19 97.1 61 75.4
MD05G1323900 Malus domestica HOM05D001548 ORTHO05D003922 7.4e-19 97.1 64 73.4
Sabra11G0030900 Salix brachista HOM05D001548 ORTHO05D003922 7.4e-19 97.1 61 78.7
Sp7g19720 Schrenkiella parvula HOM05D001548 ORTHO05D003922 9.7e-19 96.7 61 77.0
Ah.09g235980 Amaranthus hybridus HOM05D003383 ORTHO05D003890 1.3e-18 96.3 61 78.7
COL.COLO4_31558 Corchorus olitorius HOM05D001548 ORTHO05D003922 1.3e-18 96.3 61 75.4
QL05p081681 Quercus lobata HOM05D001548 ORTHO05D003922 1.3e-18 96.3 61 73.8
TAR626G1601 Trochodendron aralioides HOM05D001548 ORTHO05D003922 1.3e-18 96.3 61 77.0
CiPaw.10G119300 Carya illinoinensis HOM05D001548 ORTHO05D003922 1.6e-18 95.9 62 75.8
CiPaw.10G119700 Carya illinoinensis HOM05D001548 ORTHO05D003922 2.2e-18 95.5 61 77.0
Duzib235G0785 Durio zibethinus HOM05D001548 ORTHO05D003922 2.2e-18 95.5 60 76.7
Thhalv10025712m.g Eutrema salsugineum HOM05D001548 ORTHO05D003922 2.2e-18 95.5 61 75.4
Actinidia01927 Actinidia chinensis HOM05D001548 ORTHO05D003922 2.8e-18 95.1 61 77.0
CARHR228260 Cardamine hirsuta HOM05D001548 ORTHO05D003922 2.8e-18 95.1 61 73.8
Aqoxy339s001 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 3.7e-18 94.7 58 79.3
Carub.0007s1983 Capsella rubella HOM05D001548 ORTHO05D003922 3.7e-18 94.7 64 70.3
Gohir.A05G164400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 3.7e-18 94.7 61 77.0
Aa31LG6G3590 Aethionema arabicum HOM05D001548 ORTHO05D003922 4.8e-18 94.4 61 72.1
BcaNung02778 Brassica carinata HOM05D001548 ORTHO05D003922 4.8e-18 94.4 61 75.4
CiPaw.09G159300 Carya illinoinensis HOM05D001548 ORTHO05D003922 4.8e-18 94.4 61 73.8
GSVIVG01005847001 Vitis vinifera HOM05D001548 ORTHO05D003922 4.8e-18 94.4 61 75.4
CARHR228270 Cardamine hirsuta HOM05D001548 ORTHO05D003922 6.3e-18 94.0 61 72.1
AT4G21580 Arabidopsis thaliana HOM05D001548 ORTHO05D003922 1.1e-17 93.2 61 72.1
Cpa.g.sc27.108 Carica papaya HOM05D001548 ORTHO05D003922 1.1e-17 93.2 60 75.0
SalBow8G3959 Salvia bowleyana HOM05D001548 ORTHO05D003922 1.1e-17 93.2 61 77.0
THA.LOC104812957 Tarenaya hassleriana HOM05D001548 ORTHO05D003922 1.1e-17 93.2 61 73.8
HPP92_013220 Vanilla planifolia HOM05D001548 ORTHO05D003922 1.4e-17 92.8 61 75.4
HPP92_013258 Vanilla planifolia HOM05D001548 ORTHO05D003922 1.4e-17 92.8 61 75.4
GSVIVG01017385001 Vitis vinifera HOM05D000311 ORTHO05D000183 1.4e-17 92.8 61 75.4
AL7G32440 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 1.8e-17 92.4 61 72.1
Gohir.D05G167400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.8e-17 92.4 61 75.4
Gorai.009G172500 Gossypium raimondii HOM05D001548 ORTHO05D003922 1.8e-17 92.4 61 75.4
GSVIVG01017391001 Vitis vinifera HOM05D001548 ORTHO05D003922 1.8e-17 92.4 59 78.0
A01p12900 Brassica napus HOM05D001548 ORTHO05D003922 2.4e-17 92.0 60 75.0
BraA01t01234Z Brassica rapa HOM05D001548 ORTHO05D003922 2.4e-17 92.0 60 75.0
Nn1g06719 Nelumbo nucifera HOM05D001548 ORTHO05D003922 2.4e-17 92.0 55 80.0
Gohir.D05G167300 Gossypium hirsutum HOM05D001548 ORTHO05D003922 4.1e-17 91.3 61 73.8
Gorai.009G172400 Gossypium raimondii HOM05D001548 ORTHO05D003922 4.1e-17 91.3 61 73.8
Sc17g0006490 Simmondsia chinensis HOM05D001548 ORTHO05D003922 4.1e-17 91.3 60 75.0
Duzib160G0467 Durio zibethinus HOM05D001548 ORTHO05D003922 5.3e-17 90.9 61 73.8
Thecc.06G196800 Theobroma cacao HOM05D001548 ORTHO05D003922 5.3e-17 90.9 61 73.8
BolC1t01506H Brassica oleracea HOM05D001548 ORTHO05D003922 6.9e-17 90.5 60 73.3
ATR0693G362 Amborella trichopoda HOM05D001548 ORTHO05D003922 9.0e-17 90.1 61 72.1
GSVIVG01005848001 Vitis vinifera HOM05D001548 ORTHO05D003922 1.2e-16 89.7 61 72.1
AagrBONN_evm.TU.Sc2ySwM_228.729 Anthoceros agrestis HOM05D001548 ORTHO05D003922 2.0e-16 89.0 62 67.7
C01p15540 Brassica napus HOM05D001548 ORTHO05D003922 2.0e-16 89.0 60 71.7
SMO367G0057 Selaginella moellendorffii HOM05D001548 ORTHO05D003922 2.0e-16 89.0 61 68.9
GSVIVG01017397001 Vitis vinifera HOM05D001548 ORTHO05D003922 2.0e-16 89.0 61 73.8
GSVIVG01017420001 Vitis vinifera HOM05D001548 ORTHO05D003922 2.0e-16 89.0 61 73.8
RcHm_v2.0_Chr5g0006731 Rosa chinensis HOM05D001548 ORTHO05D003922 5.9e-16 87.4 55 76.4
Mapoly0005s0036 Marchantia polymorpha HOM05D001548 ORTHO05D003922 7.7e-16 87.0 61 67.2
Pp3c12_2540 Physcomitrium patens HOM05D001548 ORTHO05D003922 2.2e-15 85.5 61 70.5
Os02g0805600 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003922 3.8e-15 84.7 61 67.2
Psat1g207920 Pisum sativum HOM05D001548 ORTHO05D003922 6.5e-15 84.0 61 65.6
Zm00001eb258260 Zea mays HOM05D001548 ORTHO05D003922 8.5e-15 83.6 61 63.9
GSVIVG01017401001 Vitis vinifera HOM05D001548 ORTHO05D003922 5.5e-14 80.9 61 72.1
GSVIVG01017404001 Vitis vinifera HOM05D000311 ORTHO05D000183 5.5e-14 80.9 61 72.1
Zm00001eb339820 Zea mays HOM05D001548 ORTHO05D003922 2.1e-13 79.0 61 65.6
GSVIVG01023519001 Vitis vinifera HOM05D001548 ORTHO05D003922 2.3e-12 75.5 61 67.2
RcHm_v2.0_Chr5g0030471 Rosa chinensis HOM05D001548 ORTHO05D003922 1.5e-11 72.8 75 50.7
RcHm_v2.0_Chr5g0030371 Rosa chinensis HOM05D001548 ORTHO05D003922 2.0e-11 72.4 74 51.4
FvH4_3g18080 Fragaria vesca HOM05D001548 ORTHO05D003922 3.3e-11 71.6 55 58.2
FAN16G2449 Fragaria x ananassa HOM05D001548 ORTHO05D003922 3.3e-11 71.6 55 58.2
RcHm_v2.0_Chr5g0030211 Rosa chinensis HOM05D001548 ORTHO05D003922 1.7e-10 69.3 75 49.3
Os06g0208151 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003922 2.2e-10 68.9 47 70.2
Cc10_g04970 Coffea canephora HOM05D001548 ORTHO05D003922 1.1e-09 66.6 63 50.8
FvH4_6g30490 Fragaria vesca HOM05D001548 ORTHO05D003922 1.8e-09 65.9 56 53.6
Lj1A1211G82 Lonicera japonica HOM05D001548 ORTHO05D003922 2.6e-08 62.0 40 77.5
FvH4_3g02190 Fragaria vesca HOM05D001548 ORTHO05D003922 5.9e-08 60.8 55 52.7
FAN21G0425 Fragaria x ananassa HOM05D001548 ORTHO05D003922 5.9e-08 60.8 75 45.3
arahy.Tifrunner.gnm1.ann1.AGA1SQ Arachis hypogaea HOM05D001548 ORTHO05D003922 2.9e-07 58.5 33 81.8
Cc09_g10030 Coffea canephora HOM05D001548 ORTHO05D003922 8.5e-07 57.0 65 49.2
Cc10_g04960 Coffea canephora HOM05D001548 ORTHO05D003922 1.9e-06 55.8 62 43.5
RcHm_v2.0_Chr5g0003521 Rosa chinensis HOM05D001548 ORTHO05D003922 9.4e-06 53.5 58 46.6


User provided reference genes

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