Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g011760 Medicago truncatula HOM05D006486 ORTHO05D007888 7.7e-141 503.8 259 100.0
TPR.G36802 Trifolium pratense HOM05D006486 ORTHO05D007888 1.5e-112 409.8 262 81.3
Ca_00252_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 8.7e-92 340.9 254 74.0
Glyma.15G067400 Glycine max HOM05D006486 ORTHO05D007888 2.4e-86 322.8 262 65.3
Glyma.13G246500 Glycine max HOM05D006486 ORTHO05D007888 2.1e-85 319.7 265 64.2
Psat1g208760 Pisum sativum HOM05D006486 ORTHO05D007888 1.2e-77 293.9 227 70.9
VMungo0540G0810 Vigna mungo HOM05D006486 ORTHO05D007888 8.7e-76 287.7 265 60.8
Phvul.006G192300 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 2.5e-75 286.2 265 60.0
Lj6g0020154 Lotus japonicus HOM05D006486 ORTHO05D007888 3.7e-74 282.3 272 62.1
Lalb_Chr20g0122301 Lupinus albus HOM05D006486 ORTHO05D007888 3.7e-74 282.3 268 58.2
arahy.Tifrunner.gnm1.ann1.3M60GY Arachis hypogaea HOM05D006486 ORTHO05D007888 4.0e-73 278.9 274 59.5
arahy.Tifrunner.gnm1.ann1.4FF3SU Arachis hypogaea HOM05D006486 ORTHO05D007888 5.8e-72 275.0 275 58.5
Lj4g0025313 Lotus japonicus HOM05D006486 ORTHO05D007888 5.6e-67 258.5 274 55.5
TPR.G25690 Trifolium pratense HOM05D006486 ORTHO05D007888 6.5e-63 245.0 269 55.0
Glyma.08G059200 Glycine max HOM05D006486 ORTHO05D007888 2.8e-58 229.6 280 50.0
Medtr4g091220 Medicago truncatula HOM05D006486 ORTHO05D007888 2.9e-55 219.5 269 52.8
RcHm_v2.0_Chr5g0006301 Rosa chinensis HOM05D006486 ORTHO05D007888 3.6e-53 212.6 272 47.4
FAN16G2112 Fragaria x ananassa HOM05D006486 ORTHO05D007888 6.7e-52 208.4 267 48.3
TAR624G1400 Trochodendron aralioides HOM05D006486 ORTHO05D007888 4.5e-48 195.7 254 46.9
FAN21G2539 Fragaria x ananassa HOM05D006486 ORTHO05D007888 5.9e-48 195.3 261 47.5
MD10G1303500 Malus domestica HOM05D006486 ORTHO05D007888 5.9e-48 195.3 278 46.4
Prupe.4G037000 Prunus persica HOM05D006486 ORTHO05D007888 5.9e-48 195.3 285 43.5
Cfa000350 Carpinus fangiana HOM05D006486 ORTHO05D007888 1.7e-47 193.7 276 46.4
VMungo0251G3177 Vigna mungo HOM05D006486 ORTHO05D007888 3.8e-47 192.6 279 44.4
FvH4_3g03970 Fragaria vesca HOM05D006486 ORTHO05D007888 1.9e-46 190.3 267 45.3
FAN11G1020 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.9e-46 190.3 267 45.3
FAN25G3184 Fragaria x ananassa HOM05D006486 ORTHO05D007888 3.2e-46 189.5 260 45.8
Haze_06575 Corylus avellana HOM05D006486 ORTHO05D007888 7.2e-46 188.3 276 45.7
Haze_06576 Corylus avellana HOM05D006486 ORTHO05D007888 7.2e-46 188.3 276 45.7
Phvul.002G221700 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 1.2e-45 187.6 278 45.0
TWI63G1620 Tripterygium wilfordii HOM05D006486 ORTHO05D007888 1.2e-45 187.6 256 45.7
Psat7g109320 Pisum sativum HOM05D006486 ORTHO05D007888 1.8e-44 183.7 236 50.0
MD05G1325600 Malus domestica HOM05D006486 ORTHO05D007888 8.8e-44 181.4 264 47.3
GSVIVG01003184001 Vitis vinifera HOM05D006486 ORTHO05D007888 8.8e-44 181.4 250 48.0
QL04p018235 Quercus lobata HOM05D006486 ORTHO05D007888 2.2e-42 176.8 264 45.8
TAR629G2100 Trochodendron aralioides HOM05D006486 ORTHO05D007888 6.3e-42 175.3 248 47.2
Nn1g06762 Nelumbo nucifera HOM05D006486 ORTHO05D007888 2.4e-41 173.3 237 46.4
CiPaw.09G157800 Carya illinoinensis HOM05D006486 ORTHO05D007888 2.6e-40 169.9 274 44.2
Nn1g03891 Nelumbo nucifera HOM05D006486 ORTHO05D007888 1.0e-39 167.9 233 47.2
Ca_18481_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 1.3e-39 167.5 279 42.3
CANSAT56G1095 Cannabis sativa HOM05D006486 ORTHO05D007888 4.2e-38 162.5 275 39.6
Manes.17G039100 Manihot esculenta HOM05D006486 ORTHO05D007888 7.2e-38 161.8 248 45.6
CSS0009661 Camellia sinensis var. sinensis HOM05D006486 ORTHO05D007888 1.2e-37 161.0 242 45.0
Manes.16G020500 Manihot esculenta HOM05D006486 ORTHO05D007888 2.1e-37 160.2 249 44.2
Thecc.06G199700 Theobroma cacao HOM05D006486 ORTHO05D007888 6.1e-37 158.7 240 46.7
Aqoxy1G03879 Aquilegia oxysepala HOM05D006486 ORTHO05D007888 1.0e-36 157.9 244 43.9
Cpa.g.sc27.128 Carica papaya HOM05D006486 ORTHO05D007888 1.4e-36 157.5 249 41.8
Duzib235G1194 Durio zibethinus HOM05D006486 ORTHO05D007888 1.4e-36 157.5 239 49.0
Cc02_g12410 Coffea canephora HOM05D006486 ORTHO05D007888 5.2e-36 155.6 235 46.0
Atru.chr10.2014 Acer truncatum HOM05D006486 ORTHO05D007888 8.8e-36 154.8 290 39.0
Actinidia24058 Actinidia chinensis HOM05D006486 ORTHO05D007888 2.0e-35 153.7 213 48.4
Gorai.011G022900 Gossypium raimondii HOM05D006486 ORTHO05D007888 1.4e-33 147.5 246 43.9
Gohir.A10G021000 Gossypium hirsutum HOM05D006486 ORTHO05D007888 5.3e-33 145.6 246 43.5
COL.COLO4_31586 Corchorus olitorius HOM05D006486 ORTHO05D007888 7.0e-33 145.2 242 45.5
Gohir.D10G021800 Gossypium hirsutum HOM05D006486 ORTHO05D007888 7.0e-33 145.2 246 43.5
Potri.011G042600 Populus trichocarpa HOM05D006486 ORTHO05D007888 1.2e-32 144.4 276 39.5
Sabra11G0029300 Salix brachista HOM05D006486 ORTHO05D007888 7.7e-32 141.7 243 40.3
MSTRG.7289 Avicennia marina HOM05D006486 ORTHO05D007888 2.2e-31 140.2 239 40.6
Oeu014709.1 Olea europaea HOM05D006486 ORTHO05D007888 2.2e-31 140.2 243 37.4
Potri.004G034200 Populus trichocarpa HOM05D006486 ORTHO05D007888 2.9e-31 139.8 270 40.7
Sabra04G0019900 Salix brachista HOM05D006486 ORTHO05D007888 3.8e-31 139.4 253 41.1
THA.LOC104812719 Tarenaya hassleriana HOM05D006486 ORTHO05D007888 5.0e-31 139.0 232 41.4
Rhsim02G0119500 Rhododendron simsii HOM05D006486 ORTHO05D007888 1.9e-30 137.1 263 38.8
Nitab4.5_0002222g0020 Nicotiana tabacum HOM05D006486 ORTHO05D007888 5.5e-30 135.6 258 39.5
Aa31LG6G3500 Aethionema arabicum HOM05D006486 ORTHO05D007888 7.2e-30 135.2 259 38.6
MSTRG.15936 Avicennia marina HOM05D006486 ORTHO05D007888 1.6e-29 134.0 251 41.4
Actinidia11810 Actinidia chinensis HOM05D006486 ORTHO05D007888 3.6e-29 132.9 194 44.8
Ciclev10016271m.g Citrus clementina HOM05D006486 ORTHO05D007888 1.0e-28 131.3 258 39.1
Lj1P1213T18 Lonicera japonica HOM05D006486 ORTHO05D007888 3.0e-28 129.8 134 50.7
HanXRQChr08g0224091 Helianthus annuus HOM05D006486 ORTHO05D007888 3.4e-27 126.3 323 33.7
Oeu059548.1 Olea europaea HOM05D006486 ORTHO05D007888 3.4e-27 126.3 219 40.2
Sed0019218 Sechium edule HOM05D006486 ORTHO05D007888 3.4e-27 126.3 244 38.1
Solyc02g079160.2 Solanum lycopersicum HOM05D006486 ORTHO05D007888 7.5e-27 125.2 260 39.6
BolC1t01497H Brassica oleracea HOM05D006486 ORTHO05D007888 2.2e-26 123.6 249 37.8
PGSC0003DMG400022406 Solanum tuberosum HOM05D006486 ORTHO05D007888 2.2e-26 123.6 259 39.4
C01p15430 Brassica napus HOM05D006486 ORTHO05D007888 4.8e-26 122.5 249 37.8
HanXRQChr16g0517421 Helianthus annuus HOM05D006486 ORTHO05D007888 8.3e-26 121.7 283 33.6
Nitab4.5_0000190g0060 Nicotiana tabacum HOM05D006486 ORTHO05D007888 8.3e-26 121.7 265 37.4
SGA_v2.0_scaffold7G03946 Striga asiatica HOM05D006486 ORTHO05D007888 1.1e-25 121.3 240 39.2
ClCG01G022550 Citrullus lanatus HOM05D006486 ORTHO05D007888 1.4e-25 120.9 244 38.9
Migut.M01215 Erythranthe guttata HOM05D006486 ORTHO05D007888 7.7e-24 115.2 249 36.5
Sopen02g023960 Solanum pennellii HOM05D006486 ORTHO05D007888 1.7e-23 114.0 260 38.8
AL7G32570 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 2.2e-23 113.6 250 34.4
BcaNung02794 Brassica carinata HOM05D006486 ORTHO05D007888 2.9e-23 113.2 249 38.6
Nitab4.5_0006573g0010 Nicotiana tabacum HOM05D006486 ORTHO05D007888 5.0e-23 112.5 271 35.8
SalBow8G4438 Salvia bowleyana HOM05D006486 ORTHO05D007888 6.5e-23 112.1 117 53.0
AT4G21500 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 8.5e-23 111.7 240 35.8
A01p12810 Brassica napus HOM05D006486 ORTHO05D007888 1.5e-22 110.9 249 37.8
Peaxi162Scf00083g00023 Petunia axillaris HOM05D006486 ORTHO05D007888 3.2e-22 109.8 232 37.9
CsaV3_6G049740 Cucumis sativus L. HOM05D006486 ORTHO05D007888 1.6e-21 107.5 249 36.1
DCAR_004139 Daucus carota HOM05D006486 ORTHO05D007888 8.0e-21 105.1 202 38.6
Oeu030052.1 Olea europaea HOM05D006486 ORTHO05D007888 1.4e-20 104.4 200 37.5
PSO210G7027 Papaver somniferum HOM05D006486 ORTHO05D007888 3.0e-20 103.2 247 34.0
PGR004G0715 Punica granatum HOM05D006486 ORTHO05D007888 5.2e-20 102.4 250 37.2
PSO832G0007 Papaver somniferum HOM05D006486 ORTHO05D007888 8.8e-20 101.7 247 33.2
Thhalv10026096m.g Eutrema salsugineum HOM05D006486 ORTHO05D007888 1.5e-19 100.9 259 34.7
Gohir.D09G070600 Gossypium hirsutum HOM05D006486 ORTHO05D007888 3.4e-19 99.8 247 37.7
Gorai.006G085300 Gossypium raimondii HOM05D006486 ORTHO05D007888 3.4e-19 99.8 247 37.7
BraA01t01225Z Brassica rapa HOM05D006486 ORTHO05D007888 4.4e-19 99.4 252 34.9
Carub.0007s1992 Capsella rubella HOM05D006486 ORTHO05D007888 4.4e-19 99.4 248 35.9
CARHR228160 Cardamine hirsuta HOM05D006486 ORTHO05D007888 5.7e-19 99.0 257 32.7
CDE05G2620 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 5.7e-19 99.0 248 36.3
MELO3C007322.2 Cucumis melo HOM05D006486 ORTHO05D007888 1.7e-18 97.4 243 35.8
ECA234G0536 Erigeron canadensis HOM05D006486 ORTHO05D007888 1.7e-18 97.4 172 38.4
Sp7g19620 Schrenkiella parvula HOM05D006486 ORTHO05D007888 3.7e-18 96.3 262 35.1
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 3.1e-17 93.2 181 38.7
Lsat_1_v5_gn_4_56921 Lactuca sativa HOM05D006486 ORTHO05D007888 2.0e-16 90.5 124 41.9
Oeu043421.1 Olea europaea HOM05D006486 ORTHO05D007888 2.0e-16 90.5 242 33.5
CDE05G2026 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 4.5e-16 89.4 117 51.3
Gohir.D06G211933 Gossypium hirsutum HOM05D006486 ORTHO05D007888 7.7e-16 88.6 248 35.5
Gorai.010G254200 Gossypium raimondii HOM05D006486 ORTHO05D007888 7.7e-16 88.6 248 35.9
Sed0006081 Sechium edule HOM05D006486 ORTHO05D007888 1.6e-13 80.9 346 28.0
EL10Ac8g20532 Beta vulgaris HOM05D006486 ORTHO05D007888 8.0e-13 78.6 314 31.2
Oeu051330.1 Olea europaea HOM05D006486 ORTHO05D007888 1.8e-12 77.4 82 47.6
Sc24g0000710 Simmondsia chinensis HOM05D006486 ORTHO05D007888 3.7e-10 69.7 156 36.5
Oeu021600.1 Olea europaea HOM05D006486 ORTHO05D007888 4.1e-09 66.2 78 50.0
AT4G05018 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 4.3e-06 56.2 184 29.3


User provided reference genes

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