Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.9e-267 925.2 467 100.0
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 3.7e-250 867.8 467 93.4
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 7.2e-246 853.6 467 91.9
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.3e-244 848.6 467 91.4
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 4.2e-230 801.2 467 85.4
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 6.7e-228 793.9 471 85.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 2.8e-226 788.5 471 85.1
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 3.1e-225 785.0 469 84.0
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.5e-222 776.2 471 82.8
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 3.2e-222 775.0 474 82.9
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.2e-197 693.3 471 75.2
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 4.7e-197 691.4 471 76.2
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.6e-195 685.6 471 74.7
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.4e-195 685.3 471 74.7
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.8e-195 684.5 471 74.7
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 5.8e-195 684.5 460 75.7
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 7.5e-195 684.1 473 74.4
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 4.9e-194 681.4 471 75.6
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 6.4e-194 681.0 471 74.7
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.9e-193 679.5 471 74.1
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 3.2e-193 678.7 445 76.4
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 3.2e-193 678.7 472 74.8
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 9.2e-193 677.2 471 75.4
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 2.7e-192 675.6 472 74.4
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 3.5e-192 675.2 460 74.8
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 3.5e-192 675.2 468 74.4
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 6.0e-192 674.5 461 75.5
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 7.8e-192 674.1 457 74.0
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.0e-191 673.7 459 74.3
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.0e-191 673.7 453 74.4
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.0e-191 673.7 457 74.0
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 6.6e-191 671.0 456 73.2
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 6.6e-191 671.0 470 73.6
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.5e-190 669.1 445 75.7
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.3e-190 668.3 445 75.7
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.3e-190 668.3 445 75.7
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 5.6e-190 667.9 472 72.7
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 4.7e-189 664.8 473 72.3
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 4.7e-189 664.8 434 76.5
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 6.2e-189 664.5 459 73.9
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.1e-188 663.7 454 73.6
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 4.0e-188 661.8 457 73.3
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 6.8e-188 661.0 441 75.7
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 6.8e-188 661.0 467 72.8
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.2e-187 660.2 459 73.2
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.2e-187 660.2 459 73.2
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.2e-187 660.2 441 75.3
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.2e-187 660.2 457 73.3
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.2e-187 660.2 461 74.0
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 2.6e-187 659.1 459 73.0
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 4.4e-187 658.3 457 74.6
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 7.5e-187 657.5 459 72.8
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 7.5e-187 657.5 451 73.4
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 9.8e-187 657.1 459 72.8
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 1.3e-186 656.8 443 75.2
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.7e-186 656.4 472 71.2
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 2.2e-186 656.0 436 75.5
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.9e-186 655.6 467 71.1
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.9e-185 652.9 452 72.6
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 2.4e-185 652.5 462 72.1
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 9.2e-185 650.6 452 73.7
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 2.1e-184 649.4 459 71.5
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.1e-184 649.4 444 74.8
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 6.0e-184 647.9 444 73.6
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 3.0e-183 645.6 463 71.1
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.0e-183 645.6 472 71.2
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.1e-183 644.8 468 71.2
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 5.1e-183 644.8 444 74.3
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 6.6e-183 644.4 458 72.7
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 6.6e-183 644.4 455 73.2
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 8.6e-183 644.0 471 70.3
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-182 643.7 443 73.8
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.5e-182 643.3 432 73.4
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.6e-182 641.3 472 71.0
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 7.3e-182 641.0 456 71.5
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 7.3e-182 641.0 456 71.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.6e-181 639.8 464 70.7
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.6e-181 639.8 460 71.7
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 2.8e-181 639.0 436 73.2
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.4e-180 636.7 434 73.7
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 6.8e-180 634.4 463 70.6
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 8.9e-180 634.0 464 71.1
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.2e-179 633.6 442 72.9
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 3.4e-179 632.1 470 69.4
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.3e-178 630.2 459 71.7
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.7e-178 629.8 447 72.0
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.7e-178 629.8 453 71.1
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.9e-178 629.0 453 71.7
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.9e-178 628.2 457 68.5
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 4.1e-177 625.2 461 71.4
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 4.1e-177 625.2 489 67.5
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 2.7e-176 622.5 432 74.5
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.3e-175 620.2 432 72.7
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 6.6e-175 617.8 441 71.7
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.5e-174 615.9 468 67.9
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.3e-174 615.5 432 72.2
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.3e-174 615.5 433 72.7
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.3e-174 615.1 427 72.8
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 7.3e-174 614.4 453 70.2
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 6.2e-173 611.3 468 67.9
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.2e-170 602.8 459 67.8
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.3e-166 589.0 472 65.3
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 4.3e-166 588.6 492 63.0
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.4e-164 583.6 464 65.5
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 1.8e-164 583.2 580 57.1
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 4.0e-164 582.0 433 69.1
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 5.3e-164 581.6 432 68.8
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.5e-163 580.1 419 69.2
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 7.6e-163 577.8 467 64.7
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.9e-162 575.1 467 64.7
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 5.4e-161 571.6 395 74.2
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.6e-160 570.1 467 64.2
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 5.1e-159 565.1 472 65.0
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 5.6e-158 561.6 460 64.6
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.1e-156 557.4 443 65.5
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 4.0e-156 555.4 474 62.7
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 9.9e-155 550.8 442 65.4
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 5.4e-153 545.0 403 66.7
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.8e-148 530.0 452 61.7
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.3e-142 509.2 456 61.2
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 7.4e-142 508.1 386 68.4
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 3.7e-141 505.8 459 58.0
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.4e-140 503.8 357 72.5
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.0e-138 497.7 412 65.8
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.8e-132 476.9 352 67.6
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 4.1e-132 475.7 369 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.0e-130 471.1 439 56.9
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.3e-130 470.7 453 55.4
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 3.2e-129 466.1 438 57.5
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.2e-128 464.2 436 57.3
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 5.1e-127 458.8 456 55.7
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.2e-115 421.0 395 57.7
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 7.7e-115 418.3 317 68.1
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.2e-114 416.8 262 80.2
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 5.0e-98 362.5 320 62.2
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.6e-96 357.5 307 60.9
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 2.1e-88 330.5 258 64.7
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.4e-84 317.8 197 79.7
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.9e-81 307.4 212 73.1
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.4e-79 301.2 213 72.8
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 9.2e-76 288.5 441 42.0
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 4.4e-62 243.0 181 70.2
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 6.2e-48 196.1 139 73.4
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.1e-47 195.3 155 69.7
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 9.0e-39 165.6 208 48.6
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 1.9e-33 147.9 157 53.5
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 2.4e-31 141.0 149 54.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 2.2e-21 107.8 61 88.5
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.2e-11 75.5 56 60.7


User provided reference genes

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