Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 2.4e-102 375.6 198 100.0
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 8.1e-82 307.4 199 79.9
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 3.3e-75 285.4 197 76.1
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.6e-74 283.1 198 74.7
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.1e-73 278.9 198 73.2
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.2e-72 276.9 197 74.1
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.5e-72 276.6 201 71.6
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.7e-71 273.1 195 70.8
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.2e-71 272.7 185 71.4
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.9e-71 272.3 199 72.9
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.9e-71 272.3 197 71.1
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.8e-71 271.9 199 69.8
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.8e-71 271.9 181 74.0
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 4.9e-71 271.6 171 80.7
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 6.4e-71 271.2 197 70.1
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.4e-70 270.0 178 75.8
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.2e-70 268.9 197 68.0
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 7.1e-70 267.7 168 80.4
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 9.3e-70 267.3 195 71.3
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 9.3e-70 267.3 197 71.6
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.6e-69 266.5 177 73.4
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.6e-69 266.5 197 70.1
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.5e-69 265.4 197 67.5
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 6.0e-69 264.6 197 69.0
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.0e-68 263.8 195 69.7
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.3e-68 263.5 193 69.4
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.8e-68 263.1 197 69.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.3e-68 262.7 192 70.8
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 2.3e-68 262.7 194 68.0
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 3.0e-68 262.3 187 72.2
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 3.9e-68 261.9 177 72.9
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 5.1e-68 261.5 192 70.8
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 5.1e-68 261.5 200 70.0
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 6.7e-68 261.2 182 73.6
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 6.7e-68 261.2 197 68.5
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 6.7e-68 261.2 201 67.2
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 8.7e-68 260.8 196 69.9
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 8.7e-68 260.8 179 71.5
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 8.7e-68 260.8 175 72.6
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.5e-67 260.0 195 69.2
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.5e-67 260.0 197 69.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.5e-67 260.0 198 65.7
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.9e-67 259.6 195 67.2
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 5.6e-67 258.1 177 71.2
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.3e-66 256.9 168 78.6
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.3e-66 256.9 184 70.1
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.3e-66 256.9 168 74.4
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.6e-66 256.5 184 70.7
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.6e-66 256.5 201 72.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 2.8e-66 255.8 202 66.3
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 2.8e-66 255.8 202 66.3
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 8.1e-66 254.2 197 66.0
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.0e-65 251.9 166 71.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 6.9e-65 251.1 177 71.8
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 9.0e-65 250.8 197 66.5
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 9.0e-65 250.8 197 66.5
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.2e-64 250.4 179 69.8
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 2.0e-64 249.6 195 66.7
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 2.6e-64 249.2 194 67.0
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 2.6e-64 249.2 194 67.0
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 4.5e-64 248.4 190 67.9
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 5.8e-64 248.1 182 66.5
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 7.6e-64 247.7 183 66.1
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.3e-63 246.9 180 67.8
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.3e-63 246.9 172 70.3
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.7e-63 246.5 201 63.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.7e-63 246.5 201 59.2
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.7e-63 246.5 182 68.1
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.2e-63 246.1 197 64.5
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.2e-63 246.1 201 63.2
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.2e-63 246.1 182 65.4
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.2e-63 246.1 198 63.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.8e-63 245.4 197 67.0
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 6.5e-63 244.6 179 68.2
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 6.5e-63 244.6 191 65.4
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.4e-62 243.4 182 65.9
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.9e-62 243.0 195 65.1
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 3.2e-62 242.3 204 62.7
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 3.2e-62 242.3 181 66.9
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.2e-62 242.3 196 62.2
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 4.2e-62 241.9 181 70.2
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.5e-62 241.5 197 64.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 7.1e-62 241.1 150 75.3
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 9.3e-62 240.7 197 61.9
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 9.3e-62 240.7 181 69.6
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 7.9e-61 237.7 204 62.3
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.0e-60 237.3 205 61.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.3e-60 236.1 198 63.1
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.3e-60 236.1 180 66.7
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 5.1e-60 235.0 197 61.4
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 8.7e-60 234.2 210 57.6
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.1e-59 233.8 186 60.8
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.5e-59 233.4 161 70.2
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.5e-59 233.4 177 65.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.9e-59 233.0 197 58.9
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 3.3e-59 232.3 202 59.4
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.3e-59 232.3 198 62.6
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 3.3e-59 232.3 169 65.7
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 4.3e-59 231.9 177 65.0
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 5.7e-59 231.5 217 56.2
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 7.4e-59 231.1 197 60.4
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 9.6e-59 230.7 177 65.0
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.3e-58 230.3 208 59.1
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 6.3e-58 228.0 179 65.4
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.4e-57 226.9 181 63.0
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.1e-57 225.7 172 66.3
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 4.1e-57 225.3 229 55.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.1e-57 225.3 160 69.4
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.1e-57 225.3 160 69.4
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.2e-56 223.8 166 66.9
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.5e-56 221.9 161 68.9
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.0e-55 220.7 225 55.6
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.0e-55 220.7 169 63.9
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 2.2e-55 219.5 177 61.0
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 5.0e-55 218.4 173 64.2
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 6.5e-55 218.0 171 63.7
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 3.2e-54 215.7 173 63.0
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 3.2e-54 215.7 167 64.1
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.5e-51 206.8 198 58.6
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.9e-51 206.5 190 56.3
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.5e-51 206.1 142 67.6
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 5.3e-49 198.4 166 60.2
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 6.1e-45 184.9 224 49.1
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.4e-44 183.7 155 58.1
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.4e-44 183.7 177 54.2
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 3.9e-44 182.2 183 55.2
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.5e-43 180.3 165 54.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.3e-43 178.7 164 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 4.5e-40 168.7 170 51.8
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.4e-38 163.7 115 75.7
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.8e-34 148.7 117 63.2
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.4e-33 147.1 165 45.5
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 2.4e-33 146.4 114 67.5
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 4.1e-33 145.6 101 70.3
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 9.1e-33 144.4 197 39.6
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.6e-32 143.7 193 43.5
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.0e-32 143.3 125 58.4
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.6e-32 142.9 147 49.7
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.7e-32 141.4 101 68.3
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 6.5e-31 138.3 97 71.1
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.5e-30 137.1 81 85.2
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.7e-29 132.9 95 66.3
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 5.2e-28 128.6 139 48.2
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 9.7e-27 124.4 102 61.8
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.8e-26 122.9 102 60.8
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.5e-22 110.5 167 41.3
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.2e-20 102.1 79 67.1
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 9.8e-19 97.8 67 68.7
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 3.8e-15 85.9 63 66.7
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 4.2e-14 82.4 77 61.0
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.6e-13 80.5 125 38.4
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 2.0e-11 73.6 76 52.6
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.7e-10 70.5 68 52.9
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.4e-09 66.6 46 73.9
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.0e-09 65.1 41 80.5
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.7e-08 63.2 96 41.7
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 3.3e-06 56.2 55 58.2


User provided reference genes

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