Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.5e-153 545.4 278 100.0
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 3.6e-136 488.4 278 86.3
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 5.8e-126 454.5 281 81.9
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 4.4e-118 428.3 286 76.6
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 4.4e-118 428.3 285 76.8
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 5.1e-114 414.8 280 74.6
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.5e-113 412.5 285 75.1
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 5.6e-113 411.4 285 74.4
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.9e-108 396.4 291 70.1
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 1.4e-103 380.2 287 66.9
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 3.1e-103 379.0 280 67.5
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 5.3e-103 378.3 284 69.4
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 1.5e-102 376.7 281 71.9
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 7.6e-102 374.4 287 66.2
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 9.9e-102 374.0 273 68.1
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 9.9e-102 374.0 257 71.2
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 2.2e-101 372.9 281 68.0
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 2.9e-101 372.5 226 79.6
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 2.9e-101 372.5 282 66.0
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.4e-100 369.4 282 65.2
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 3.2e-100 369.0 282 64.9
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 7.1e-100 367.9 281 66.9
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.6e-99 366.7 282 65.6
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.1e-99 366.3 281 66.5
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.7e-99 365.9 278 66.5
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 3.5e-99 365.5 284 67.6
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 4.6e-99 365.2 246 70.3
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 7.8e-99 364.4 278 65.5
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.0e-98 364.0 273 66.3
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.3e-98 363.6 280 64.6
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.3e-98 363.6 273 66.3
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 6.6e-98 361.3 282 62.4
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 1.1e-97 360.5 279 64.9
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 2.5e-97 359.4 225 76.0
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 3.3e-97 359.0 225 76.4
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 3.3e-97 359.0 289 64.0
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 3.3e-97 359.0 282 66.0
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 4.8e-96 355.1 225 75.6
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 6.2e-96 354.8 285 61.1
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 6.2e-96 354.8 229 71.6
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.4e-95 352.8 253 67.6
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 3.1e-95 352.4 223 71.3
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 4.0e-95 352.1 232 69.4
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 6.9e-95 351.3 223 72.2
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.2e-94 350.5 283 60.4
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 1.2e-94 350.5 240 70.8
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 3.4e-94 349.0 282 61.0
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 7.6e-94 347.8 223 70.4
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 9.9e-94 347.4 282 63.8
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.7e-93 346.7 274 60.2
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.7e-93 346.7 231 71.0
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 1.7e-93 346.7 221 77.4
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.9e-93 345.9 223 72.2
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 4.9e-93 345.1 222 70.7
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 8.4e-93 344.4 224 71.9
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.4e-92 343.6 282 63.8
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.9e-92 343.2 282 63.5
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 2.4e-92 342.8 282 62.8
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 2.4e-92 342.8 253 67.6
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 7.1e-92 341.3 218 71.1
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.7e-91 339.3 278 61.5
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 1.3e-90 337.0 247 66.8
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.3e-90 336.3 239 68.2
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 3.0e-90 335.9 270 64.1
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 5.1e-90 335.1 224 73.2
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 5.1e-90 335.1 225 71.1
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 5.1e-90 335.1 252 65.5
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 8.7e-90 334.3 251 64.9
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 8.7e-90 334.3 263 64.3
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 3.3e-89 332.4 250 63.2
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 4.3e-89 332.0 222 71.6
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 2.1e-88 329.7 217 70.0
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.1e-87 327.4 308 56.2
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 2.4e-87 326.2 222 67.6
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 5.3e-87 325.1 261 62.5
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 9.0e-87 324.3 220 70.5
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.7e-85 320.1 237 65.4
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 2.2e-85 319.7 225 71.1
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 2.9e-85 319.3 220 67.7
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 3.8e-85 318.9 250 63.2
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 6.4e-85 318.2 223 67.3
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 8.4e-85 317.8 215 70.7
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 1.4e-84 317.0 247 64.8
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 3.2e-84 315.8 219 66.7
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.2e-83 313.9 247 64.4
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.2e-83 313.9 286 57.0
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 7.9e-83 311.2 243 64.6
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.0e-82 310.8 215 68.8
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 5.1e-82 308.5 222 65.8
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 5.1e-82 308.5 249 61.8
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 4.3e-81 305.4 190 72.6
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 4.3e-81 305.4 241 60.6
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 4.3e-81 305.4 241 60.6
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 4.3e-81 305.4 190 72.6
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.8e-80 302.8 292 56.2
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 4.0e-79 298.9 339 51.0
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 6.9e-79 298.1 183 78.1
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 5.8e-78 295.0 188 73.9
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 1.3e-77 293.9 224 61.6
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.7e-77 293.5 301 53.2
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 4.9e-77 292.0 229 66.4
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 1.4e-76 290.4 222 64.9
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 1.3e-74 283.9 226 63.7
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 5.1e-74 282.0 183 74.9
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.5e-73 279.6 217 65.0
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 4.8e-72 275.4 262 56.9
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 6.9e-71 271.6 174 75.3
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 9.0e-71 271.2 216 64.8
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 5.9e-70 268.5 169 75.1
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 1.4e-68 263.8 241 59.3
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.3e-64 250.8 166 71.1
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 6.3e-56 221.9 219 49.3
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 4.1e-55 219.2 210 51.0
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 7.7e-54 214.9 208 49.5
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 5.0e-53 212.2 146 70.5
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 8.5e-53 211.5 203 56.2
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 1.9e-52 210.3 133 73.7
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 4.1e-47 192.6 212 44.3
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 9.4e-44 181.4 198 45.5
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 2.7e-43 179.9 151 64.2
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 1.3e-40 171.0 119 72.3
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.4e-39 167.5 106 73.6
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 7.2e-28 128.6 188 34.0
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 1.5e-25 120.9 86 62.8
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 5.7e-25 119.0 129 50.4
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 9.8e-25 118.2 80 67.5
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 8.3e-24 115.2 80 65.0
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 4.1e-23 112.8 132 47.7
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 9.2e-23 111.7 96 62.5
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 1.7e-21 107.5 187 34.2
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 8.6e-21 105.1 117 47.9
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 8.0e-19 98.6 71 62.0
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 4.9e-16 89.4 81 53.1
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 3.4e-09 66.6 47 68.1
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 3.4e-09 66.6 61 52.5
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 8.3e-08 62.0 42 69.0
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 6.0e-06 55.8 49 53.1


User provided reference genes

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