Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 3.8e-186 654.8 364 100.0
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 1.5e-145 520.0 402 76.4
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 3.4e-134 482.3 326 80.4
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 1.4e-127 460.3 328 82.0
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 4.9e-125 451.8 415 65.8
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 3.9e-122 442.2 376 69.7
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 9.9e-118 427.6 418 65.6
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 4.9e-117 425.2 418 65.3
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 1.6e-115 420.2 412 65.3
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 2.7e-115 419.5 412 64.6
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 4.6e-115 418.7 376 67.6
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 1.3e-106 390.6 233 89.7
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.4e-103 380.6 405 62.5
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 4.3e-97 359.0 405 57.3
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 7.4e-97 358.2 403 57.8
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 1.3e-96 357.5 418 55.7
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 3.7e-96 355.9 405 57.0
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 1.2e-94 350.9 416 54.8
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 4.5e-94 349.0 416 56.2
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.0e-93 347.8 413 56.2
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.3e-93 347.4 403 54.8
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 4.9e-93 345.5 409 56.7
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 4.9e-93 345.5 406 56.4
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 6.4e-93 345.1 386 58.3
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.1e-92 344.4 413 55.9
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 1.2e-91 340.9 398 56.3
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 1.6e-91 340.5 419 54.9
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 1.0e-90 337.8 393 56.2
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 8.7e-90 334.7 417 54.0
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 8.7e-90 334.7 417 54.0
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 5.7e-89 332.0 382 52.9
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 7.4e-89 331.6 418 53.6
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 9.6e-89 331.3 403 54.1
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 4.8e-88 328.9 425 53.6
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 6.2e-88 328.6 417 53.7
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 4.0e-87 325.9 367 58.9
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 4.0e-87 325.9 252 71.0
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 3.4e-86 322.8 410 54.4
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 4.5e-86 322.4 422 52.1
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 6.5e-85 318.5 408 52.5
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 3.2e-84 316.2 398 53.3
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 9.3e-84 314.7 416 51.4
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 1.2e-83 314.3 408 50.5
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 7.9e-83 311.6 449 48.6
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.3e-82 310.1 424 50.0
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 5.1e-82 308.9 451 47.9
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 5.7e-81 305.4 358 55.9
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 2.2e-80 303.5 376 52.1
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.8e-80 303.1 383 55.4
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 3.7e-80 302.8 367 51.0
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 3.7e-80 302.8 346 55.8
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 4.8e-80 302.4 377 50.7
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 1.8e-79 300.4 409 49.6
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 2.4e-79 300.1 430 51.2
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 2.4e-79 300.1 393 53.4
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 4.1e-79 299.3 413 50.1
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 5.3e-79 298.9 392 52.6
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 6.9e-79 298.5 392 52.6
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 2.0e-78 297.0 404 51.5
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 4.5e-78 295.8 263 62.0
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 1.0e-77 294.7 368 50.0
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.7e-77 293.9 394 52.3
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 5.0e-77 292.4 367 55.3
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 2.5e-76 290.0 289 57.1
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 3.2e-76 289.7 346 51.7
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 1.4e-74 284.3 374 53.5
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 5.1e-74 282.3 351 52.7
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 2.0e-73 280.4 381 48.6
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 2.5e-73 280.0 389 50.6
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 4.3e-73 279.3 390 48.5
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 1.3e-72 277.7 360 52.2
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 1.3e-72 277.7 377 52.8
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.7e-72 277.3 433 46.0
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 2.8e-72 276.6 378 52.9
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 3.7e-72 276.2 262 56.5
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 4.8e-72 275.8 253 64.0
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 2.4e-71 273.5 319 54.2
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 1.5e-70 270.8 362 51.9
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 1.5e-70 270.8 368 50.3
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.5e-70 270.8 367 52.9
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 3.4e-70 269.6 323 52.0
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 4.5e-70 269.2 375 51.5
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.2e-69 266.9 409 47.9
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 6.5e-69 265.4 426 44.8
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.5e-68 263.5 416 46.4
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 2.5e-68 263.5 513 42.3
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 2.7e-67 260.0 335 51.9
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 2.7e-67 260.0 347 52.4
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 3.6e-67 259.6 347 51.9
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 7.9e-67 258.5 382 46.1
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 5.1e-66 255.8 373 51.7
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 9.7e-65 251.5 389 48.6
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.3e-64 251.1 398 49.7
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 2.2e-64 250.4 378 49.5
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 2.2e-64 250.4 356 52.5
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.8e-63 247.3 245 58.4
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.1e-63 246.5 396 47.7
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 1.2e-62 244.6 374 49.5
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 5.9e-62 242.3 367 48.8
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 1.0e-61 241.5 367 48.8
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 6.5e-61 238.8 407 43.0
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 2.5e-60 236.9 342 47.7
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 4.2e-60 236.1 368 48.6
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 2.1e-59 233.8 391 48.3
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 3.6e-59 233.0 389 47.8
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.8e-58 230.7 396 47.5
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 1.8e-58 230.7 227 58.6
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 4.4e-57 226.1 275 49.8
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 7.7e-54 215.3 323 48.3
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 1.3e-53 214.5 381 42.3
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 3.8e-53 213.0 333 44.1
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 1.6e-51 207.6 387 43.2
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 8.3e-48 195.3 358 40.5
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.1e-47 194.9 226 50.0
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 4.0e-42 176.4 311 40.8
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 5.4e-39 166.0 319 36.4
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.4e-39 166.0 387 41.3
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 7.0e-39 165.6 231 47.2
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 2.3e-37 160.6 360 40.0
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 6.1e-35 152.5 142 59.9
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.5e-33 147.9 263 41.8
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 3.2e-31 140.2 163 57.1
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.8e-25 118.6 358 36.9
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 2.7e-22 110.5 131 53.4
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 6.6e-21 105.9 85 62.4
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 3.1e-18 97.1 203 39.4
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 8.3e-16 89.0 234 33.3
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 2.4e-15 87.4 104 43.3
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 3.2e-15 87.0 80 60.0
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 6.0e-14 82.8 240 29.2
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-12 78.2 80 56.2
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 6.8e-10 69.3 67 53.7
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 5.8e-09 66.2 58 53.4
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.9e-09 65.5 138 36.2
Hund06385 Selenicereus undatus HOM05D004981 ORTHO05D005635 3.7e-08 63.5 92 44.6
BolC7t41892H Brassica oleracea HOM05D004981 ORTHO05D042093 4.9e-08 63.2 74 48.6
BolC5t29476H Brassica oleracea HOM05D004981 ORTHO05D005635 9.2e-07 58.9 51 52.9
BraA08t32917Z Brassica rapa HOM05D004981 ORTHO05D005635 2.7e-06 57.4 102 39.2
Psat2g020240 Pisum sativum HOM05D032968 ORTHO05D005635 6.0e-06 56.2 58 55.2


User provided reference genes

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