Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 5.6e-30 133.7 69 100.0
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.4e-25 119.0 65 92.3
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 7.8e-24 113.2 65 87.7
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.1e-23 110.5 65 86.2
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.1e-23 110.5 65 86.2
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 7.3e-22 106.7 65 81.5
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.6e-21 105.5 65 80.0
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 2.4e-20 101.7 65 72.3
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 3.1e-20 101.3 65 75.4
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 4.0e-20 100.9 65 75.4
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 4.0e-20 100.9 65 75.4
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 4.0e-20 100.9 65 75.4
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.4e-19 97.4 65 70.8
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 4.4e-19 97.4 65 70.8
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 4.4e-19 97.4 65 72.3
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.3e-18 95.9 65 69.2
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.3e-18 95.9 65 69.2
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.7e-18 95.5 64 71.9
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.2e-18 95.1 65 69.2
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.2e-18 95.1 65 70.8
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 2.2e-18 95.1 65 69.2
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.9e-18 94.7 65 67.7
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 2.9e-18 94.7 65 67.7
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 3.8e-18 94.4 65 69.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 3.8e-18 94.4 65 69.2
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 4.9e-18 94.0 65 69.2
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 4.9e-18 94.0 127 48.8
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 4.9e-18 94.0 66 69.7
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 6.4e-18 93.6 65 69.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 6.4e-18 93.6 65 66.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.1e-17 92.8 65 69.2
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.1e-17 92.8 63 69.8
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.4e-17 92.4 65 67.7
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.4e-17 91.7 65 66.2
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 2.4e-17 91.7 58 74.1
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.2e-17 91.3 61 73.8
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.4e-17 90.5 65 66.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 5.4e-17 90.5 62 71.0
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 9.3e-17 89.7 65 66.2
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 9.3e-17 89.7 59 71.2
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.2e-16 89.4 65 67.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.6e-16 89.0 65 66.2
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.6e-16 89.0 57 71.9
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 2.1e-16 88.6 63 68.3
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 2.1e-16 88.6 65 63.1
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 2.1e-16 88.6 66 63.6
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.1e-16 88.6 65 66.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.1e-16 88.6 65 66.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.7e-16 88.2 65 66.2
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.7e-16 88.2 66 63.6
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.7e-16 88.2 66 63.6
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 3.5e-16 87.8 65 63.1
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 4.6e-16 87.4 61 65.6
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 4.6e-16 87.4 62 67.7
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 6.0e-16 87.0 61 65.6
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 6.0e-16 87.0 61 65.6
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.0e-16 87.0 65 64.6
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 6.0e-16 87.0 65 64.6
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 7.8e-16 86.7 65 61.5
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 7.8e-16 86.7 61 65.6
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 7.8e-16 86.7 62 67.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 7.8e-16 86.7 66 69.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 7.8e-16 86.7 65 64.6
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 7.8e-16 86.7 61 63.9
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 7.8e-16 86.7 65 63.1
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.0e-15 86.3 61 63.9
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.0e-15 86.3 62 71.0
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-15 85.9 61 63.9
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.3e-15 85.9 63 68.3
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.7e-15 85.5 65 60.0
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.7e-15 85.5 65 63.1
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.3e-15 85.1 61 65.6
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 2.3e-15 85.1 61 62.3
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.3e-15 85.1 61 63.9
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.3e-15 85.1 65 61.5
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 2.3e-15 85.1 65 63.1
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 2.3e-15 85.1 63 63.5
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.3e-15 85.1 65 64.6
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 3.0e-15 84.7 61 63.9
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 3.0e-15 84.7 65 63.1
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 3.9e-15 84.3 61 63.9
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 3.9e-15 84.3 61 63.9
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.9e-15 84.3 62 67.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 3.9e-15 84.3 62 66.1
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.9e-15 84.3 59 67.8
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 5.1e-15 84.0 65 61.5
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 5.1e-15 84.0 65 60.0
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.1e-15 84.0 63 63.5
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 6.6e-15 83.6 66 65.2
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 8.7e-15 83.2 61 62.3
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 8.7e-15 83.2 65 60.0
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 8.7e-15 83.2 57 70.2
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.1e-14 82.8 61 62.3
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.1e-14 82.8 62 61.3
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 1.5e-14 82.4 59 64.4
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.9e-14 82.0 61 62.3
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.9e-14 82.0 61 62.3
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.9e-14 82.0 65 58.5
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.5e-14 81.6 59 64.4
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 2.5e-14 81.6 65 60.0
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.5e-14 81.6 63 61.9
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 3.3e-14 81.3 65 55.4
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.3e-14 81.3 65 58.5
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.3e-14 81.3 61 60.7
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 4.3e-14 80.9 65 61.5
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.3e-14 80.9 62 59.7
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 5.6e-14 80.5 59 62.7
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 5.6e-14 80.5 63 58.7
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 7.3e-14 80.1 65 60.0
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 7.3e-14 80.1 59 62.7
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.3e-13 79.3 65 63.1
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.3e-13 79.3 53 71.7
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 2.1e-13 78.6 62 59.7
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 2.1e-13 78.6 57 66.7
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 2.1e-13 78.6 65 58.5
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.6e-13 77.8 65 60.0
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 4.8e-13 77.4 53 67.9
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 4.0e-12 74.3 57 61.4
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 4.0e-12 74.3 57 59.6
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 4.0e-12 74.3 61 60.7
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 9.0e-12 73.2 57 59.6
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 9.0e-12 73.2 57 59.6
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.2e-11 72.8 58 60.3
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 4.5e-11 70.9 58 58.6
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 5.8e-11 70.5 50 68.0
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.3e-10 69.3 61 54.1
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.9e-10 68.2 57 54.4
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 7.1e-09 63.5 56 53.6
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 9.3e-09 63.2 52 59.6
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.2e-08 62.8 42 71.4
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 2.3e-07 58.5 54 51.9
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.3e-07 58.5 47 63.8
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 7.4e-06 53.5 61 41.0
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 7.4e-06 53.5 61 41.0


User provided reference genes

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