Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 4.9e-111 404.4 198 100.0
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.5e-96 356.3 198 86.4
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.4e-94 349.0 198 84.8
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.4e-94 349.0 198 84.8
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.6e-90 336.3 198 79.3
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 6.8e-89 330.9 198 76.8
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 2.6e-88 328.9 170 94.1
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.4e-88 328.2 198 75.8
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 7.6e-88 327.4 198 76.3
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 7.6e-88 327.4 198 75.8
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 7.6e-88 327.4 198 76.8
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 2.9e-87 325.5 198 75.8
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 3.0e-84 315.5 198 72.2
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 72.7
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 70.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 4.4e-80 301.6 198 71.2
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 70.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 69.7
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 70.2
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 71.2
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 68.7
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 70.2
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 68.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 70.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 69.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 69.7
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 68.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 69.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 69.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 68.2
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 67.2
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 67.2
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 68.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 68.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 67.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 68.7
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 7.9e-77 290.8 198 67.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.0e-76 290.4 199 69.3
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 66.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 2.3e-76 289.3 199 70.4
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 3.0e-76 288.9 200 68.0
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 3.0e-76 288.9 198 66.7
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 67.2
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 65.7
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 65.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 66.7
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 66.2
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 68.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 65.7
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 3.3e-75 285.4 198 66.7
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.3e-75 285.0 198 66.2
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 4.3e-75 285.0 198 65.7
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 68.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 67.2
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 67.7
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 67.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 67.2
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 66.2
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 2.1e-74 282.7 198 66.7
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 2.8e-74 282.3 198 68.2
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 4.8e-74 281.6 217 64.5
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 6.2e-74 281.2 198 64.1
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 64.6
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 64.6
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 64.6
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.8e-73 279.6 198 64.1
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 63.6
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 3.1e-73 278.9 198 64.6
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 3.1e-73 278.9 198 65.7
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.1e-73 278.9 198 63.1
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 63.1
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 6.9e-73 277.7 198 64.6
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.5e-72 276.6 200 66.5
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 2.0e-72 276.2 198 64.1
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.0e-72 276.2 219 60.3
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.6e-72 275.8 206 62.1
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 4.5e-72 275.0 216 60.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 5.8e-72 274.6 198 64.6
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 5.8e-72 274.6 198 64.6
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 7.6e-72 274.2 206 61.7
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 2.2e-71 272.7 198 64.6
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 2.9e-71 272.3 198 64.1
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 2.9e-71 272.3 198 64.6
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.8e-71 271.9 198 66.2
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.9e-71 271.6 198 63.1
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.1e-70 270.4 198 65.7
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.1e-70 270.4 241 56.0
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.4e-70 269.2 233 57.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 9.3e-70 267.3 236 54.7
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.1e-69 266.2 198 61.6
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.1e-69 266.2 234 55.6
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.7e-69 265.8 234 55.1
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.8e-68 263.1 170 71.2
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 7.4e-67 257.7 176 67.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 9.6e-67 257.3 253 51.4
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.1e-66 256.1 198 61.6
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 6.2e-66 254.6 171 67.3
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 5.3e-65 251.5 173 65.9
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.2e-64 250.4 198 60.1
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 2.9e-63 245.7 198 60.1
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.4e-62 243.4 198 58.6
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 4.2e-62 241.9 180 60.6
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.6e-61 238.4 198 61.1
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 4.6e-61 238.4 191 60.2
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.6e-61 238.4 188 60.6
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 2.8e-58 229.2 155 67.1
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.8e-57 226.5 160 64.4
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.9e-55 219.2 120 83.3
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 8.4e-55 217.6 198 54.5
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.6e-53 213.4 167 60.5
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 7.9e-53 211.1 198 49.5
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 8.7e-52 207.6 145 64.8
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.1e-51 207.2 198 47.0
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 7.4e-51 204.5 135 70.4
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 9.7e-51 204.1 196 50.0
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.4e-49 200.3 197 47.7
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.9e-46 189.9 130 66.9
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.4e-44 183.7 87 95.4
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.3e-44 183.0 133 58.6
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 3.0e-44 182.6 160 53.8
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 8.8e-44 181.0 130 69.2
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 7.4e-43 177.9 185 53.0
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.1e-41 174.1 115 65.2
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 5.3e-41 171.8 115 68.7
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 5.9e-40 168.3 143 55.9
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.2e-37 160.6 111 69.4
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 7.9e-37 157.9 143 53.8
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 6.7e-36 154.8 142 50.7
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.4e-33 146.4 115 54.8
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.1e-33 145.6 115 54.8
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.3e-31 140.6 145 46.9
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 1.4e-28 130.6 97 68.0
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 2.6e-27 126.3 145 55.2
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 5.7e-27 125.2 77 77.9
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 1.7e-26 123.6 115 54.8
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 9.1e-25 117.9 65 92.3
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 6.5e-23 111.7 77 72.7
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.5e-22 110.5 77 70.1
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.5e-22 110.5 77 71.4
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 9.4e-22 107.8 77 68.8
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 2.1e-21 106.7 94 59.6
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.0e-20 104.4 77 67.5
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.0e-20 104.4 77 67.5
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.8e-20 103.6 81 64.2
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 3.0e-20 102.8 69 73.9
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 3.0e-20 102.8 99 48.5
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 3.0e-20 102.8 82 56.1
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.2e-20 102.1 77 63.6
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.2e-18 96.7 75 64.0
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 3.7e-18 95.9 71 60.6
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 8.3e-18 94.7 64 68.8
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 5.4e-17 92.0 72 63.9
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 2.9e-15 86.3 55 69.1
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.6e-13 80.5 46 87.0
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 1.8e-12 77.0 64 60.9
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 4.0e-12 75.9 64 50.0
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 5.7e-11 72.0 55 54.5
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 5.7e-11 72.0 191 24.1
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-10 70.9 74 45.9
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 4.9e-10 68.9 196 31.6
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.8e-09 67.0 59 54.2
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.4e-09 66.6 56 50.0
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 4.1e-09 65.9 119 31.1
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.5e-06 57.4 51 52.9
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 3.3e-06 56.2 34 61.8


User provided reference genes

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