Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 3.9e-58 229.2 277 100.0
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 1.1e-49 201.1 277 93.9
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.1e-41 174.5 280 76.8
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 3.7e-40 169.5 284 70.1
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 2.0e-38 163.7 280 76.4
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.6e-38 163.3 282 68.1
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.5e-36 157.5 277 70.8
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.7e-35 153.3 280 71.1
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.2e-33 147.9 193 85.0
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 3.3e-33 146.4 281 75.8
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 5.7e-33 145.6 279 73.5
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 9.7e-33 144.8 283 73.5
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.7e-33 144.8 280 59.6
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 2.2e-32 143.7 306 66.3
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 4.8e-32 142.5 194 85.6
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.6e-30 137.5 283 67.5
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.7e-30 136.7 283 70.3
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 3.5e-30 136.3 277 66.8
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.0e-29 134.8 283 65.7
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.0e-29 134.8 280 71.8
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.7e-29 134.0 280 73.2
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 1.7e-29 134.0 281 75.4
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 5.0e-29 132.5 280 74.3
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 6.5e-29 132.1 279 66.7
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 8.5e-29 131.7 278 65.8
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 3.2e-28 129.8 281 69.8
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 4.2e-28 129.4 280 66.1
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 4.2e-28 129.4 283 66.4
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 5.5e-28 129.0 280 73.9
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 1.6e-27 127.5 273 70.3
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.0e-26 124.8 194 76.3
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.4e-26 124.4 194 73.2
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.8e-26 124.0 282 72.0
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 6.8e-26 122.1 194 74.7
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 6.8e-26 122.1 293 57.0
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.6e-25 120.2 195 75.9
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 5.7e-25 119.0 278 70.5
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.7e-25 119.0 304 61.5
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 7.5e-25 118.6 195 76.9
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.8e-24 116.7 283 67.8
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 6.3e-24 115.5 278 60.1
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.1e-23 114.8 269 69.9
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 1.8e-23 114.0 280 62.5
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 1.2e-22 111.3 196 73.5
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.6e-22 110.9 174 69.5
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.0e-22 110.5 190 58.4
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 4.5e-22 109.4 274 64.2
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.9e-22 109.0 194 66.5
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 2.2e-21 107.1 159 81.1
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 2.2e-21 107.1 284 54.6
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.9e-21 106.7 195 68.7
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 3.8e-21 106.3 270 52.2
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 5.0e-21 105.9 271 70.1
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.0e-21 105.9 191 63.9
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 6.5e-21 105.5 313 52.1
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 1.5e-20 104.4 283 67.1
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 3.2e-20 103.2 159 88.7
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 3.2e-20 103.2 193 61.1
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 4.2e-20 102.8 283 58.3
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 5.5e-20 102.4 158 85.4
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.2e-19 101.3 285 61.8
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.7e-19 99.4 194 56.7
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.3e-18 97.1 275 50.2
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 3.0e-18 96.7 159 73.6
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 4.0e-18 96.3 275 66.5
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 5.2e-18 95.9 200 62.0
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 5.2e-18 95.9 195 75.4
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 6.8e-18 95.5 194 67.0
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.8e-18 95.5 194 68.6
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.2e-17 94.7 194 69.1
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 1.5e-17 94.4 201 57.7
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 2.0e-17 94.0 196 65.3
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 2.6e-17 93.6 304 65.8
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 2.6e-17 93.6 189 60.3
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 3.4e-17 93.2 200 57.5
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 3.4e-17 93.2 196 73.0
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 5.7e-17 92.4 280 66.8
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 1.3e-16 91.3 196 64.8
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 1.7e-16 90.9 201 66.2
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.7e-16 90.9 159 81.1
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 2.2e-16 90.5 158 70.3
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 3.7e-16 89.7 167 68.3
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 3.7e-16 89.7 195 71.8
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 3.7e-16 89.7 159 69.2
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 3.7e-16 89.7 159 69.2
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.1e-15 88.2 194 71.1
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 3.1e-15 86.7 194 62.4
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 4.1e-15 86.3 104 58.7
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 5.4e-15 85.9 276 56.9
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 7.0e-15 85.5 195 56.4
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 9.2e-15 85.1 307 62.2
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 1.2e-14 84.7 72 66.7
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 1.6e-14 84.3 194 69.1
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.0e-14 84.0 194 61.3
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 2.7e-14 83.6 133 84.2
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 3.5e-14 83.2 152 55.9
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 7.7e-14 82.0 188 62.8
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 7.7e-14 82.0 197 74.1
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 7.7e-14 82.0 303 68.0
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.0e-13 81.6 179 66.5
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.0e-13 81.6 185 69.2
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.3e-13 81.3 182 39.6
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.3e-13 81.3 196 72.4
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.3e-13 81.3 159 71.7
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 3.8e-13 79.7 191 61.3
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 8.6e-13 78.6 196 71.4
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.1e-12 78.2 70 67.1
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 1.5e-12 77.8 305 66.9
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.5e-12 77.8 69 65.2
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 1.9e-12 77.4 196 62.8
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.5e-12 77.0 156 60.9
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 4.3e-12 76.3 195 65.6
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 4.3e-12 76.3 134 78.4
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 9.5e-12 75.1 160 73.1
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 1.6e-11 74.3 197 62.4
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 1.6e-11 74.3 207 63.8
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 2.1e-11 73.9 276 63.4
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 6.1e-11 72.4 160 55.6
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 8.0e-11 72.0 69 63.8
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 8.0e-11 72.0 160 68.8
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.0e-10 71.6 187 63.1
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.4e-10 71.2 107 56.1
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 1.8e-10 70.9 71 73.2
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.3e-10 70.5 156 61.5
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 3.0e-10 70.1 269 60.2
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 3.0e-10 70.1 157 66.2
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 4.0e-10 69.7 70 55.7
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 4.0e-10 69.7 195 63.1
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 5.2e-10 69.3 157 60.5
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.2e-10 69.3 156 62.2
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 1.2e-09 68.2 84 57.1
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 2.0e-09 67.4 134 62.7
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 2.0e-09 67.4 315 47.0
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 2.0e-09 67.4 72 65.3
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 2.0e-09 67.4 187 61.0
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 3.4e-09 66.6 87 50.6
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 3.4e-09 66.6 70 67.1
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 1.3e-08 64.7 194 58.8
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.3e-08 64.7 97 54.6
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 1.3e-08 64.7 72 55.6
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.7e-08 64.3 46 76.1
Sabra01G0163000 Salix brachista HOM05D003347 ORTHO05D003821 1.7e-08 64.3 159 76.7
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.7e-08 64.3 72 63.9
Ciclev10002126m.g Citrus clementina HOM05D003347 ORTHO05D003821 2.9e-08 63.5 195 62.1
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 2.9e-08 63.5 72 51.4
Pp3c9_6610 Physcomitrium patens HOM05D003347 ORTHO05D003821 3.7e-08 63.2 284 54.6
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.7e-08 63.2 186 53.2
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 4.9e-08 62.8 156 52.6
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.4e-08 62.4 156 60.3
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 8.3e-08 62.0 108 58.3
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.1e-07 61.6 196 45.9
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.1e-07 61.6 72 63.9
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 1.4e-07 61.2 276 53.3
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.8e-07 60.8 178 69.1
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 4.1e-07 59.7 46 67.4
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 7.0e-07 58.9 72 47.2
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 7.0e-07 58.9 103 57.3
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.6e-06 57.8 109 49.5
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 2.0e-06 57.4 177 45.2
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 4.6e-06 56.2 225 53.8
AL6G23960 Arabidopsis lyrata HOM05D012923 ORTHO05D014747 7.8e-06 55.5 174 43.1
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 7.8e-06 55.5 201 62.7
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 7.8e-06 55.5 107 46.7


User provided reference genes

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