Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 1.3e-141 506.9 372 100.0
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 6.5e-133 478.0 253 98.0
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 1.6e-83 313.9 335 80.0
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 3.4e-81 306.2 212 75.9
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 9.9e-81 304.7 211 78.7
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 4.3e-60 236.1 194 67.5
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 1.2e-54 218.0 185 69.7
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 2.4e-50 203.8 215 56.3
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 1.0e-48 198.4 189 60.3
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 4.6e-46 189.5 193 60.6
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 3.8e-40 169.9 144 66.0
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 1.9e-39 167.5 185 57.8
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 1.2e-38 164.9 185 56.2
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 6.7e-29 132.5 188 43.6
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 3.3e-28 130.2 222 37.8
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 3.3e-28 130.2 193 43.0
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 4.4e-28 129.8 177 43.5
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 7.4e-28 129.0 230 35.7
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 9.7e-28 128.6 197 40.1
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 1.8e-26 124.4 206 40.3
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 2.4e-26 124.0 176 43.8
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 4.1e-26 123.2 191 40.3
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 9.1e-26 122.1 165 44.2
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 9.1e-26 122.1 221 38.0
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 9.1e-26 122.1 195 41.0
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.2e-25 121.7 196 39.3
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 2.6e-25 120.6 195 34.9
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 1.3e-24 118.2 188 39.4
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 1.3e-24 118.2 164 42.1
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 2.9e-24 117.1 191 41.4
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 2.9e-24 117.1 177 39.5
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 3.8e-24 116.7 188 39.4
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 5.0e-24 116.3 183 41.0
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 6.5e-24 115.9 182 40.7
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 1.1e-23 115.2 191 39.8
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 1.4e-23 114.8 210 33.8
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.4e-23 114.8 167 38.9
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.4e-23 114.8 167 38.9
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 2.5e-23 114.0 182 39.6
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 2.5e-23 114.0 176 39.8
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 3.2e-23 113.6 184 38.0
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 4.2e-23 113.2 181 39.2
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 5.5e-23 112.8 205 39.5
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 5.5e-23 112.8 205 39.5
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 1.2e-22 111.7 163 41.1
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 2.7e-22 110.5 164 41.5
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 3.6e-22 110.2 205 38.5
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 4.7e-22 109.8 187 38.0
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 6.1e-22 109.4 191 38.7
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 6.1e-22 109.4 212 36.8
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 8.0e-22 109.0 130 48.5
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 1.0e-21 108.6 191 38.2
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 1.8e-21 107.8 220 35.0
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 2.3e-21 107.5 183 38.8
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 3.9e-21 106.7 179 38.0
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 8.8e-21 105.5 212 33.5
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 1.5e-20 104.8 205 37.6
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 7.4e-20 102.4 214 37.4
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 9.7e-20 102.1 190 33.7
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 2.2e-19 100.9 189 34.4
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 6.3e-19 99.4 180 38.9
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.4e-18 98.2 166 36.7
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 1.8e-18 97.8 166 36.7
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 2.4e-18 97.4 166 36.1
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 4.1e-18 96.7 168 36.3
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 9.1e-18 95.5 179 35.8
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 1.2e-17 95.1 147 40.8
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 2.6e-17 94.0 190 30.0
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 3.5e-17 93.6 163 37.4
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 4.5e-17 93.2 179 35.2
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.3e-16 91.7 167 32.9
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 3.8e-16 90.1 167 32.3
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 4.2e-15 86.7 181 31.5
Glyma.12G201200 Glycine max HOM05D007281 ORTHO05D009241 1.2e-14 85.1 75 61.3
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.6e-14 84.7 170 31.8
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 2.7e-14 84.0 114 41.2
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 8.0e-14 82.4 171 30.4
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 1.4e-13 81.6 186 33.9
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 2.3e-13 80.9 152 33.6
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 3.0e-13 80.5 172 33.1
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 4.0e-13 80.1 187 34.2
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 2.6e-12 77.4 167 30.5
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 7.5e-12 75.9 174 31.0
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 1.8e-10 71.2 147 34.7
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 1.8e-10 71.2 151 30.5
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 4.1e-10 70.1 180 30.0
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 7.0e-10 69.3 171 25.7
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 3.2e-07 60.5 100 35.0
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 5.5e-07 59.7 126 31.7
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 9.4e-07 58.9 126 31.0
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 9.4e-07 58.9 118 27.1
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.6e-06 58.2 219 22.8
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 1.6e-06 58.2 126 31.7
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.6e-06 58.2 126 31.7
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 1.6e-06 58.2 190 23.2
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 3.6e-06 57.0 119 32.8
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 4.7e-06 56.6 220 24.5
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 4.7e-06 56.6 209 22.5
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 6.1e-06 56.2 193 23.8
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 6.1e-06 56.2 151 29.8
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 8.0e-06 55.8 164 30.5
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 8.0e-06 55.8 115 29.6


User provided reference genes

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