Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 0.0e+00 1289.2 676 100.0
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 0.0e+00 1192.6 677 93.4
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 0.0e+00 1094.3 661 87.3
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 0.0e+00 1083.2 678 85.3
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 7.3e-308 1060.1 674 83.8
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 2.6e-305 1051.6 673 83.1
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.3e-304 1049.3 692 80.1
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.1e-295 1019.6 625 87.8
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 8.4e-288 993.4 733 75.0
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.5e-284 981.9 614 85.7
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 9.0e-282 973.4 674 77.6
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.5e-276 956.1 670 76.7
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 5.6e-276 954.1 673 77.1
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 4.5e-273 944.5 673 75.0
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 3.2e-271 938.3 671 72.3
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.1e-269 931.0 667 73.8
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 6.7e-269 930.6 616 81.0
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 7.6e-265 917.1 670 74.5
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 7.6e-265 917.1 670 74.5
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 4.9e-264 914.4 666 75.4
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.2e-263 911.8 694 68.0
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.2e-262 909.8 672 72.5
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.1e-261 904.4 669 73.1
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 6.9e-258 894.0 697 71.4
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 5.9e-257 891.0 672 72.5
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.1e-254 882.5 674 72.4
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.1e-254 882.5 680 70.4
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.9e-254 880.6 674 71.8
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.0e-253 878.6 674 72.3
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.5e-252 876.3 639 73.4
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 2.5e-252 875.5 628 74.2
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 7.4e-252 874.0 670 73.1
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 7.4e-252 874.0 677 71.8
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.3e-251 873.2 669 71.2
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.8e-250 869.4 671 72.0
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.0e-248 863.6 674 70.8
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 3.8e-248 861.7 624 76.3
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 3.2e-247 858.6 667 71.1
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.2e-246 856.7 666 71.2
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 3.6e-246 855.1 674 71.4
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 4.7e-246 854.7 675 72.0
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.4e-245 853.2 670 71.0
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.3e-245 852.4 673 69.1
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.8e-243 845.5 670 71.8
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 7.0e-242 840.9 676 69.8
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 9.4e-239 830.5 682 68.6
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 5.7e-236 821.2 657 71.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 5.7e-236 821.2 678 69.5
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.8e-234 816.2 682 67.9
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.0e-233 812.8 670 68.7
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 2.2e-232 809.3 680 67.2
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.9e-232 808.9 687 67.1
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 5.0e-232 808.1 674 69.0
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.0e-232 808.1 648 68.2
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.5e-232 807.4 640 69.2
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.1e-231 807.0 789 61.9
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 7.5e-228 794.3 681 66.7
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.1e-226 790.4 667 65.4
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.2e-225 786.9 668 66.8
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 1.7e-224 783.1 591 74.5
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.9e-224 782.3 560 76.8
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.7e-222 775.8 642 67.4
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 2.0e-220 769.6 656 65.9
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.1e-218 763.8 604 71.4
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 4.1e-218 761.9 675 66.1
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 4.5e-217 758.4 678 65.6
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 7.7e-217 757.7 654 65.4
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 3.8e-216 755.4 671 65.4
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 7.2e-215 751.1 675 65.6
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 7.2e-215 751.1 684 64.2
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 2.0e-212 743.0 674 61.7
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 2.2e-211 739.6 670 64.3
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 4.9e-211 738.4 675 64.0
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.2e-209 733.8 679 63.8
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-209 733.8 680 63.4
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 3.5e-209 732.3 672 63.8
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 3.5e-209 732.3 672 63.8
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 5.9e-209 731.5 678 63.3
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 5.9e-209 731.5 678 63.3
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 5.0e-208 728.4 680 63.2
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 6.6e-208 728.0 738 55.7
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 3.6e-206 722.2 673 64.3
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.4e-204 715.7 672 62.6
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.4e-204 715.7 672 62.6
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.3e-203 713.8 657 63.8
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.4e-202 710.3 696 60.8
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 6.2e-198 694.9 545 71.7
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 9.2e-194 681.0 525 70.7
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 3.0e-192 676.0 690 58.8
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 3.3e-191 672.5 679 55.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.6e-190 670.2 630 63.2
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 6.8e-189 664.8 497 73.6
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 8.9e-189 664.5 612 60.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 4.6e-185 652.1 456 77.9
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 3.3e-183 646.0 675 55.1
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.5e-180 637.1 675 56.3
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 6.4e-179 631.7 653 59.1
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 4.2e-178 629.0 609 61.4
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.3e-178 627.9 617 57.7
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.9e-175 620.2 680 53.5
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 7.3e-167 591.7 468 66.0
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.8e-165 587.0 669 53.8
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.7e-163 580.5 716 48.5
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 9.3e-162 574.7 666 55.1
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.8e-158 563.1 404 77.0
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 9.3e-154 548.1 660 52.4
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.5e-145 519.6 614 48.7
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 3.1e-141 506.5 450 65.1
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 2.5e-135 486.9 618 49.0
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.7e-129 466.8 605 47.3
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.7e-129 466.1 683 46.0
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 3.6e-121 439.9 505 55.2
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.5e-114 417.9 565 46.9
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.9e-114 417.5 692 42.6
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 8.8e-104 382.1 313 74.8
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.1e-101 375.2 279 81.4
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 5.0e-99 366.3 553 45.0
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 2.7e-76 290.8 312 60.3
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.0e-75 287.3 295 56.3
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.6e-65 255.0 182 83.5
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.4e-64 251.1 200 61.5
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 7.1e-61 239.6 323 44.0
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 2.1e-60 238.0 310 53.5
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.6e-60 236.9 346 38.7
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.8e-56 224.9 292 53.4
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 2.9e-54 217.6 221 67.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.8e-54 217.2 289 41.5
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-51 208.8 192 75.5
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.5e-50 204.5 276 50.7
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 6.9e-48 196.4 167 58.7
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 3.8e-46 190.7 140 74.3
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 2.8e-41 174.5 103 92.2
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 6.9e-40 169.9 208 44.2
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 6.3e-33 146.7 83 80.7
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.2e-29 134.4 275 34.9
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.2e-28 132.5 100 70.0
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.8e-25 121.3 89 78.7
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 9.4e-21 106.3 68 73.5
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.0e-19 102.8 59 79.7
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 3.0e-19 101.3 308 28.9
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-18 99.0 91 48.4
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.5e-18 99.0 91 48.4
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.7e-17 95.5 113 51.3
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.3e-17 93.6 127 36.2
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 7.7e-15 86.7 51 82.4
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 3.8e-14 84.3 176 33.0
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 7.2e-13 80.1 53 71.7
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 3.6e-12 77.8 73 53.4
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 6.7e-11 73.6 53 60.4
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.0e-06 59.7 66 48.5
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.0e-06 59.7 66 48.5
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.0e-06 59.7 36 86.1
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 2.2e-06 58.5 117 35.9
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 2.2e-06 58.5 32 90.6
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 5.0e-06 57.4 66 51.5
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 5.0e-06 57.4 66 50.0


User provided reference genes

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