Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g006220 Medicago truncatula HOM05D001093 ORTHO05D000743 2.5e-215 751.9 401 100.0
TPR.G37844 Trifolium pratense HOM05D001093 ORTHO05D000743 7.4e-74 282.0 293 55.6
TPR.G3629 Trifolium pratense HOM05D001093 ORTHO05D000743 1.6e-73 280.8 276 59.4
TPR.G39589 Trifolium pratense HOM05D001093 ORTHO05D000743 1.2e-71 274.6 291 55.7
Psat1g092320 Pisum sativum HOM05D001093 ORTHO05D000743 3.9e-67 259.6 291 51.9
Medtr6g034375 Medicago truncatula HOM05D001093 ORTHO05D000743 4.1e-64 249.6 296 53.0
Psat1g092360 Pisum sativum HOM05D001093 ORTHO05D000743 2.9e-54 216.9 267 49.4
Medtr6g044600 Medicago truncatula HOM05D001093 ORTHO05D000743 1.9e-53 214.2 309 44.0
TPR.G36655 Trifolium pratense HOM05D001093 ORTHO05D000743 3.5e-47 193.4 213 53.5
Ca_19334_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 6.5e-46 189.1 297 42.4
Psat0s667g0160 Pisum sativum HOM05D001093 ORTHO05D000743 1.4e-40 171.4 317 38.8
Lj2g0008242 Lotus japonicus HOM05D001093 ORTHO05D000743 3.6e-36 156.8 372 33.6
Phvul.004G100400 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 1.0e-30 138.7 332 31.6
Medtr6g044110 Medicago truncatula HOM05D001093 ORTHO05D000743 7.2e-29 132.5 285 36.5
Glyma.09G125400 Glycine max HOM05D001093 ORTHO05D000743 1.6e-28 131.3 342 30.4
Glyma.06G230000 Glycine max HOM05D001093 ORTHO05D000743 6.1e-28 129.4 342 29.2
Medtr5g098320 Medicago truncatula HOM05D001093 ORTHO05D000743 8.0e-28 129.0 170 42.4
Lj2g0007742 Lotus japonicus HOM05D001093 ORTHO05D000743 1.5e-26 124.8 371 28.6
arahy.Tifrunner.gnm1.ann1.R6W0QQ Arachis hypogaea HOM05D001093 ORTHO05D000743 2.3e-22 110.9 339 28.9
Medtr1g099270 Medicago truncatula HOM05D001093 ORTHO05D000743 1.8e-19 101.3 306 27.8
Psat6g194360 Pisum sativum HOM05D001093 ORTHO05D000743 1.5e-18 98.2 261 29.5
arahy.Tifrunner.gnm1.ann1.UWTZ29 Arachis hypogaea HOM05D001093 ORTHO05D000743 2.0e-18 97.8 340 27.9
Psat0s667g0240 Pisum sativum HOM05D001093 ORTHO05D000743 2.2e-17 94.4 242 28.5
TPR.G18690 Trifolium pratense HOM05D001093 ORTHO05D000743 3.7e-17 93.6 288 28.8
Cpa.g.sc49.46 Carica papaya HOM05D001093 ORTHO05D000743 5.4e-16 89.7 252 29.0
Cpa.g.sc49.44 Carica papaya HOM05D001093 ORTHO05D000743 1.7e-14 84.7 263 28.1
TPR.G7732 Trifolium pratense HOM05D001093 ORTHO05D000743 1.5e-13 81.6 285 26.0
Ca_10694_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 4.3e-13 80.1 269 27.1
MELO3C024101.2 Cucumis melo HOM05D001093 ORTHO05D000743 1.2e-12 78.6 243 26.7
MD10G1018200 Malus domestica HOM05D001093 ORTHO05D000743 2.1e-12 77.8 60 56.7
FAN11G1971 Fragaria x ananassa HOM05D001093 ORTHO05D000743 8.0e-12 75.9 230 27.4
CiPaw.15G019400 Carya illinoinensis HOM05D001093 ORTHO05D000743 1.1e-11 75.5 62 59.7
Haze_17729 Corylus avellana HOM05D000026 ORTHO05D001292 1.8e-11 74.7 60 58.3
MD05G1018500 Malus domestica HOM05D001093 ORTHO05D000743 1.8e-11 74.7 286 23.4
Dinv11327 Davidia involucrata HOM05D001093 ORTHO05D000743 2.3e-11 74.3 221 26.2
Medtr6g052260 Medicago truncatula HOM05D001093 ORTHO05D000743 2.3e-11 74.3 64 54.7
Solyc04g009390.2 Solanum lycopersicum HOM05D001093 ORTHO05D000743 2.3e-11 74.3 172 31.4
ClCG09G009890 Citrullus lanatus HOM05D001093 ORTHO05D000743 5.2e-11 73.2 61 54.1
QL02p024630 Quercus lobata HOM05D001093 ORTHO05D000743 8.9e-11 72.4 60 58.3
Sed0006161 Sechium edule HOM05D001093 ORTHO05D000743 8.9e-11 72.4 249 25.7
FvH4_3g26810 Fragaria vesca HOM05D001093 ORTHO05D000743 1.5e-10 71.6 226 27.4
CsaV3_7G024810 Cucumis sativus L. HOM05D001093 ORTHO05D000743 2.6e-10 70.9 282 23.4
Prupe.8G022600 Prunus persica HOM05D001093 ORTHO05D000743 2.6e-10 70.9 60 51.7
CSS0013878 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 7.5e-10 69.3 68 47.1
Thecc.08G147000 Theobroma cacao HOM05D001093 ORTHO05D000743 7.5e-10 69.3 59 55.9
Ciclev10000763m.g Citrus clementina HOM05D001093 ORTHO05D000743 9.8e-10 68.9 68 48.5
Sopen04g004510 Solanum pennellii HOM05D001093 ORTHO05D030672 9.8e-10 68.9 170 31.8
CSS0045835 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.7e-09 68.2 68 45.6
Manes.18G089400 Manihot esculenta HOM05D001093 ORTHO05D000743 1.7e-09 68.2 60 51.7
Atru.chr5.93 Acer truncatum HOM05D001093 ORTHO05D000743 2.2e-09 67.8 68 50.0
Duzib116G0600 Durio zibethinus HOM05D001093 ORTHO05D000743 2.2e-09 67.8 59 57.6
RcHm_v2.0_Chr6g0276691 Rosa chinensis HOM05D001093 ORTHO05D000743 2.2e-09 67.8 63 47.6
Glyma.06G230100 Glycine max HOM05D001093 ORTHO05D000743 3.7e-09 67.0 59 52.5
Carub.0001s3475 Capsella rubella HOM05D001093 ORTHO05D000743 4.9e-09 66.6 63 49.2
Glyma.10G227100 Glycine max HOM05D001093 ORTHO05D000743 4.9e-09 66.6 292 22.9
Lj5g0005381 Lotus japonicus HOM05D001093 ORTHO05D000743 4.9e-09 66.6 283 25.1
Glyma.20G165200 Glycine max HOM05D001093 ORTHO05D000743 6.4e-09 66.2 292 24.0
Phvul.007G078100 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 6.4e-09 66.2 284 25.0
Potri.005G189400 Populus trichocarpa HOM05D001093 ORTHO05D000743 8.3e-09 65.9 63 47.6
Lsat_1_v5_gn_3_106880 Lactuca sativa HOM05D001093 ORTHO05D000743 1.1e-08 65.5 164 28.7
FAN27G2937 Fragaria x ananassa HOM05D001093 ORTHO05D000743 1.4e-08 65.1 63 47.6
Lalb_Chr06g0161481 Lupinus albus HOM05D001093 ORTHO05D000743 1.4e-08 65.1 95 41.1
RcHm_v2.0_Chr3g0451401 Rosa chinensis HOM05D001093 ORTHO05D000743 1.9e-08 64.7 65 44.6
Sabra05G0144700 Salix brachista HOM05D001093 ORTHO05D000743 1.9e-08 64.7 63 46.0
Dinv05707 Davidia involucrata HOM05D001093 ORTHO05D000743 3.2e-08 63.9 70 41.4
SHI09430 Sapria himalayana HOM05D001093 ORTHO05D000743 3.2e-08 63.9 68 45.6
AL1G51860 Arabidopsis lyrata HOM05D001093 ORTHO05D000743 5.4e-08 63.2 61 49.2
arahy.Tifrunner.gnm1.ann1.43LRWI Arachis hypogaea HOM05D001093 ORTHO05D000743 5.4e-08 63.2 67 47.8
arahy.Tifrunner.gnm1.ann1.U9V461 Arachis hypogaea HOM05D001093 ORTHO05D000743 5.4e-08 63.2 67 47.8
AT1G43770 Arabidopsis thaliana HOM05D001093 ORTHO05D000743 7.0e-08 62.8 61 47.5
A06p03830 Brassica napus HOM05D001093 ORTHO05D000743 7.0e-08 62.8 66 48.5
BraA06t23590Z Brassica rapa HOM05D001093 ORTHO05D000743 7.0e-08 62.8 66 48.5
FAN16G2856 Fragaria x ananassa HOM05D001093 ORTHO05D000743 7.0e-08 62.8 63 47.6
Thhalv10011612m.g Eutrema salsugineum HOM05D001093 ORTHO05D000743 9.2e-08 62.4 61 52.5
THA.LOC104806851 Tarenaya hassleriana HOM05D001093 ORTHO05D000743 9.2e-08 62.4 60 50.0
VMungo1309G3100 Vigna mungo HOM05D001093 ORTHO05D000743 1.2e-07 62.0 58 48.3
BcaC08g43143 Brassica carinata HOM05D001093 ORTHO05D000743 3.5e-07 60.5 66 47.0
C06p04250 Brassica napus HOM05D001093 ORTHO05D000743 3.5e-07 60.5 66 47.0
BolC6t35549H Brassica oleracea HOM05D001093 ORTHO05D000743 3.5e-07 60.5 66 47.0
Migut.C01023 Erythranthe guttata HOM05D001093 ORTHO05D000743 3.5e-07 60.5 71 39.4
Lj7A367T45 Lonicera japonica HOM05D001093 ORTHO05D000743 4.6e-07 60.1 69 42.0
TWI60G1406 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 6.0e-07 59.7 58 50.0
Lj4C851G10 Lonicera japonica HOM05D001093 ORTHO05D000743 1.0e-06 58.9 59 45.8
Nitab4.5_0004105g0040 Nicotiana tabacum HOM05D001093 ORTHO05D000743 1.0e-06 58.9 68 41.2
SalBow6G2465 Salvia bowleyana HOM05D001093 ORTHO05D000743 1.0e-06 58.9 83 41.0
Medtr3g095800 Medicago truncatula HOM05D001093 ORTHO05D000743 1.3e-06 58.5 58 46.6
Nn5g28671 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.3e-06 58.5 75 37.3
PGR042G0583 Punica granatum HOM05D001093 ORTHO05D000743 1.3e-06 58.5 74 37.8
SGA_v2.0_scaffold250G45002 Striga asiatica HOM05D001093 ORTHO05D000743 1.3e-06 58.5 69 37.7
CSS0005802 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.7e-06 58.2 59 44.1
CSS0044048 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.7e-06 58.2 59 44.1
Dinv41107 Davidia involucrata HOM05D001093 ORTHO05D000743 1.7e-06 58.2 63 39.7
Solyc04g050720.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 1.7e-06 58.2 64 42.2
Sopen04g021630 Solanum pennellii HOM05D001093 ORTHO05D000743 1.7e-06 58.2 64 42.2
Migut.N03229 Erythranthe guttata HOM05D001093 ORTHO05D000743 3.0e-06 57.4 198 26.8
Sp1g32760 Schrenkiella parvula HOM05D001093 ORTHO05D000743 3.0e-06 57.4 69 44.9
Glyma.10G227200 Glycine max HOM05D001093 ORTHO05D000743 3.9e-06 57.0 293 22.9
CAN.G4.14 Capsicum annuum HOM05D001093 ORTHO05D000743 5.0e-06 56.6 64 40.6
Glyma.04G214800 Glycine max HOM05D001093 ORTHO05D000743 8.6e-06 55.8 177 27.7


User provided reference genes

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