Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 1.6e-283 978.8 500 100.0
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 3.9e-149 532.3 639 51.2
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 6.7e-149 531.6 643 51.8
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 1.2e-102 377.9 656 39.9
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 1.2e-94 351.3 555 45.0
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 2.1e-94 350.5 492 46.5
Medtr2g005905 Medicago truncatula HOM05D003034 ORTHO05D001927 1.5e-92 344.4 229 80.3
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 1.9e-87 327.4 572 40.0
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 7.1e-74 282.3 665 33.4
Lj5g0016725 Lotus japonicus HOM05D002477 ORTHO05D001927 8.9e-69 265.4 283 53.4
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 3.8e-59 233.4 514 36.0
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 4.9e-59 233.0 521 34.9
Psat7g061320 Pisum sativum HOM05D000495 ORTHO05D000357 2.5e-55 220.7 204 60.8
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 2.6e-52 210.7 536 33.2
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 8.4e-51 205.7 547 32.0
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 8.4e-51 205.7 531 32.8
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 4.2e-50 203.4 540 33.9
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 9.3e-50 202.2 548 32.5
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.1e-49 201.1 524 31.9
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 2.1e-49 201.1 535 32.3
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 4.6e-49 199.9 535 32.3
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 6.0e-49 199.5 541 32.3
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 6.6e-48 196.1 543 30.8
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 8.7e-48 195.7 545 32.8
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 1.5e-47 194.9 509 33.6
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea HOM05D002477 ORTHO05D001927 7.3e-47 192.6 522 33.7
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea HOM05D002477 ORTHO05D001927 7.3e-47 192.6 522 33.7
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 7.3e-47 192.6 509 31.8
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 2.4e-45 187.6 537 30.2
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 3.1e-45 187.2 508 31.3
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.3e-45 186.4 503 30.6
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.0e-44 184.5 497 31.0
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 7.6e-44 182.6 541 33.3
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.7e-43 181.4 528 29.7
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 4.9e-43 179.9 497 31.2
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 8.4e-43 179.1 674 29.5
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 1.1e-42 178.7 518 30.5
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.5e-42 176.4 510 31.4
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 5.5e-42 176.4 484 30.8
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 7.1e-42 176.0 520 29.4
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 2.7e-41 174.1 522 30.7
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 2.7e-41 174.1 498 31.1
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 4.6e-41 173.3 536 31.3
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 7.9e-41 172.6 502 30.1
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 7.9e-41 172.6 500 30.6
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 1.8e-40 171.4 513 30.2
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 2.3e-40 171.0 528 30.3
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 3.0e-40 170.6 590 29.3
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 5.1e-40 169.9 533 31.0
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 5.1e-40 169.9 552 30.1
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 4.3e-39 166.8 595 29.2
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 7.4e-39 166.0 540 28.9
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 8.1e-38 162.5 533 30.4
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 1.4e-37 161.8 491 31.4
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 2.4e-37 161.0 498 30.7
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 4.0e-37 160.2 448 32.1
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 4.0e-37 160.2 523 28.9
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 4.0e-37 160.2 506 28.7
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 5.3e-37 159.8 521 29.2
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 5.3e-37 159.8 590 25.9
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.4e-36 157.1 483 30.2
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 5.8e-36 156.4 631 27.9
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 5.8e-36 156.4 519 29.9
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 3.8e-35 153.7 478 28.9
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 1.4e-34 151.8 453 32.2
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 1.9e-34 151.4 514 28.8
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 1.9e-34 151.4 516 29.5
Sc25g0005240 Simmondsia chinensis HOM05D002477 ORTHO05D001927 3.2e-34 150.6 483 29.6
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.0e-32 145.6 564 26.4
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 2.5e-31 141.0 470 27.4
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 7.4e-31 139.4 584 27.2
FAN13G2553 Fragaria x ananassa HOM05D002477 ORTHO05D001927 7.4e-31 139.4 502 29.9
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 2.8e-30 137.5 534 26.6
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 4.8e-30 136.7 474 28.9
Hund24730 Selenicereus undatus HOM05D002477 ORTHO05D001927 6.3e-30 136.3 481 28.9
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 2.6e-28 131.0 585 26.8
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 5.9e-28 129.8 480 25.6
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 1.0e-27 129.0 338 31.1
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 1.0e-27 129.0 606 25.2
FAN08G2173 Fragaria x ananassa HOM05D002477 ORTHO05D001927 6.5e-27 126.3 515 30.7
Sc19g0006700 Simmondsia chinensis HOM05D002477 ORTHO05D001927 9.3e-26 122.5 504 28.0
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 2.1e-25 121.3 643 25.3
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 4.6e-25 120.2 478 27.4
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 6.1e-25 119.8 496 27.8
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.3e-24 118.6 496 26.6
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 3.9e-24 117.1 423 30.0
Ah.04g151880 Amaranthus hybridus HOM05D002477 ORTHO05D001927 6.7e-24 116.3 480 27.1
FAN18G4344 Fragaria x ananassa HOM05D002477 ORTHO05D001927 8.7e-24 115.9 511 27.6
FAN18G0342 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.1e-23 115.5 511 27.6
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 3.3e-23 114.0 472 26.3
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 3.3e-23 114.0 251 34.7
FvH4_5g11840 Fragaria vesca HOM05D002477 ORTHO05D001927 5.7e-23 113.2 511 27.4
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 9.7e-23 112.5 213 38.5
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 2.2e-22 111.3 496 25.4
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 4.8e-22 110.2 213 38.0
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 6.3e-22 109.8 250 34.4
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.1e-21 109.0 213 37.1
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 1.1e-21 109.0 628 24.4
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 1.4e-21 108.6 169 40.8
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 2.0e-20 104.8 212 36.3
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 4.5e-20 103.6 641 24.2
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.0e-19 102.4 120 46.7
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 3.8e-19 100.5 441 24.7
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 5.0e-19 100.1 250 33.2
ATR0757G170 Amborella trichopoda HOM05D002477 ORTHO05D001927 6.5e-19 99.8 479 24.6
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 4.2e-18 97.1 400 27.8
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 5.5e-18 96.7 245 33.9
Dinv24130 Davidia involucrata HOM05D002477 ORTHO05D001927 2.1e-17 94.7 201 32.3
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.7e-17 94.4 245 33.5
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 6.1e-17 93.2 136 41.2
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.1e-15 89.0 477 22.9
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.1e-15 89.0 116 41.4
SGA_v2.0_scaffold135G34972 Striga asiatica HOM05D002477 ORTHO05D001927 1.5e-15 88.6 161 35.4
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.0e-15 88.2 503 24.7
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 7.4e-15 86.3 518 24.1
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 9.7e-15 85.9 484 25.8
SHI33652 Sapria himalayana HOM05D002477 ORTHO05D001927 9.7e-15 85.9 182 34.6
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 2.2e-14 84.7 232 32.3
Aqoxy3G04102 Aquilegia oxysepala HOM05D002477 ORTHO05D001927 2.8e-14 84.3 490 23.5
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 2.8e-14 84.3 358 27.4
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 4.1e-13 80.5 102 40.2
SalBow5G2191 Salvia bowleyana HOM05D002477 ORTHO05D001927 4.1e-13 80.5 132 33.3
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 5.3e-13 80.1 102 40.2
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 9.1e-13 79.3 145 37.2
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 9.1e-13 79.3 219 28.3
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 3.4e-12 77.4 478 22.6
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.4e-12 77.4 102 38.2
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 4.5e-12 77.0 78 41.0
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 7.7e-12 76.3 117 34.2
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 7.7e-12 76.3 489 23.1
unitig_744.g24381 Utricularia gibba HOM05D002477 ORTHO05D001927 7.7e-12 76.3 202 29.2
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 1.3e-11 75.5 150 36.0
MD12G1067700 Malus domestica HOM05D002477 ORTHO05D001927 1.7e-11 75.1 107 40.2
MSTRG.6732 Avicennia marina HOM05D002477 ORTHO05D001927 8.5e-11 72.8 71 46.5
Os11g0482500 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 1.4e-10 72.0 71 46.5
MSTRG.15028 Avicennia marina HOM05D002477 ORTHO05D001927 2.5e-10 71.2 71 43.7
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.5e-10 71.2 73 39.7
Os11g0160700 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 2.5e-10 71.2 71 46.5
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 4.2e-10 70.5 477 21.8
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 4.2e-10 70.5 472 23.1
Zm00001eb210290 Zea mays HOM05D012665 ORTHO05D015176 5.5e-10 70.1 69 47.8
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 2.1e-09 68.2 75 40.0
AagrBONN_evm.TU.Sc2ySwM_344.4106 Anthoceros agrestis HOM05D000181 ORTHO05D007068 4.7e-09 67.0 69 37.7
TWI38G0076 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 4.7e-09 67.0 91 31.9
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 6.1e-09 66.6 75 38.7
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 6.1e-09 66.6 325 26.8
Zm00001eb210520 Zea mays HOM05D012665 ORTHO05D015176 6.1e-09 66.6 199 28.6
Psat5g038080 Pisum sativum HOM05D001700 ORTHO05D016448 7.9e-09 66.2 71 50.7
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 7.9e-09 66.2 239 27.6
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 1.4e-08 65.5 70 40.0
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.8e-08 65.1 439 21.4
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 1.8e-08 65.1 169 31.4
unitig_62.g23101 Utricularia gibba HOM05D002477 ORTHO05D001927 1.8e-08 65.1 72 43.1
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 2.3e-08 64.7 167 29.9
ClCG02G003110 Citrullus lanatus HOM05D002477 ORTHO05D001927 3.0e-08 64.3 151 29.8
HPP92_005494 Vanilla planifolia HOM05D002477 ORTHO05D001927 6.7e-08 63.2 183 30.1
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 1.1e-07 62.4 124 35.5
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 1.1e-07 62.4 148 32.4
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 1.5e-07 62.0 484 21.5
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 1.5e-07 62.0 484 21.5
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 4.4e-07 60.5 151 33.1
CsaV3_7G002300 Cucumis sativus L. HOM05D002477 ORTHO05D001927 4.4e-07 60.5 88 33.0
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 4.4e-07 60.5 205 27.3
Eucgr.K01371 Eucalyptus grandis HOM05D002477 ORTHO05D001927 7.4e-07 59.7 70 35.7
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 9.7e-07 59.3 119 34.5
MELO3C024174.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.3e-06 58.9 85 32.9
HanXRQChr11g0329911 Helianthus annuus HOM05D002477 ORTHO05D001927 1.7e-06 58.5 78 39.7
CAN.G585.14 Capsicum annuum HOM05D002477 ORTHO05D001927 2.2e-06 58.2 61 36.1
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 2.8e-06 57.8 225 29.3
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 2.8e-06 57.8 230 26.5
Psat5g171320 Pisum sativum HOM05D002477 ORTHO05D001927 2.8e-06 57.8 38 73.7
Sed0002535 Sechium edule HOM05D002477 ORTHO05D001927 2.8e-06 57.8 85 32.9
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 4.8e-06 57.0 120 34.2
PSO063G1512 Papaver somniferum HOM05D002477 ORTHO05D001927 4.8e-06 57.0 133 35.3


User provided reference genes

Program Settings