Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 5.0e-102 374.8 239 100.0
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 2.7e-63 246.1 227 67.0
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 1.0e-54 217.6 216 65.3
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 3.9e-54 215.7 156 79.5
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 2.0e-50 203.4 299 53.5
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 3.9e-46 189.1 243 53.9
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 2.8e-44 183.0 253 52.2
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.4e-43 180.6 253 52.6
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 1.8e-43 180.3 258 51.6
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 1.9e-40 170.2 231 50.6
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 1.9e-40 170.2 193 57.5
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 3.6e-36 156.0 209 52.2
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 1.1e-35 154.5 185 54.1
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 2.4e-35 153.3 206 51.0
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 5.3e-35 152.1 204 50.5
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 6.9e-35 151.8 206 50.5
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 9.0e-35 151.4 206 50.0
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 9.0e-35 151.4 206 50.0
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 1.5e-34 150.6 200 51.5
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 1.3e-33 147.5 209 50.2
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.7e-33 147.1 204 50.0
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 6.4e-33 145.2 211 49.3
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 6.4e-33 145.2 212 49.1
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.4e-32 144.1 207 50.7
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 1.4e-32 144.1 187 51.9
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 1.9e-32 143.7 222 48.6
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 3.2e-32 142.9 210 50.0
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 3.2e-32 142.9 201 50.7
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 5.4e-32 142.1 195 48.7
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 7.1e-32 141.7 191 53.4
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.2e-31 141.0 195 48.2
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 1.6e-31 140.6 202 49.0
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 2.7e-31 139.8 209 46.9
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 4.6e-31 139.0 185 50.8
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 1.0e-30 137.9 208 49.5
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 1.3e-30 137.5 196 50.0
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 2.3e-30 136.7 199 50.3
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 5.1e-30 135.6 192 50.5
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 6.7e-30 135.2 218 47.2
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 4.3e-29 132.5 216 46.8
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 5.6e-29 132.1 171 50.9
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 5.6e-29 132.1 201 45.8
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 2.1e-28 130.2 192 47.9
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 3.7e-28 129.4 202 46.0
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 8.1e-28 128.3 209 46.9
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 4.0e-27 125.9 190 47.9
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 4.0e-27 125.9 203 47.3
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 6.9e-27 125.2 194 48.5
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 1.2e-26 124.4 210 45.2
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 2.0e-26 123.6 190 47.9
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 2.6e-26 123.2 162 50.6
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 5.8e-26 122.1 230 40.9
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 4.9e-25 119.0 147 51.7
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 6.4e-25 118.6 165 49.1
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 1.1e-24 117.9 199 42.7
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 1.4e-24 117.5 234 40.2
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 2.4e-24 116.7 189 44.4
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 9.3e-24 114.8 189 43.9
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 2.1e-23 113.6 142 52.8
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 2.7e-23 113.2 138 53.6
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 6.0e-23 112.1 174 48.3
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 7.9e-23 111.7 275 36.4
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 1.8e-22 110.5 217 39.6
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.8e-22 110.5 202 42.1
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 2.3e-22 110.2 275 37.1
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 5.1e-22 109.0 140 51.4
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 5.6e-21 105.5 193 43.0
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 9.6e-21 104.8 171 44.4
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 3.7e-20 102.8 196 43.4
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 1.8e-19 100.5 178 40.4
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 4.0e-19 99.4 220 38.2
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 9.0e-19 98.2 170 42.4
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 2.9e-17 93.2 121 52.9
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 6.5e-17 92.0 109 54.1
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 2.5e-16 90.1 200 36.5
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 2.5e-16 90.1 200 36.5
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 2.5e-16 90.1 202 41.6
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 4.2e-16 89.4 195 39.0
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 1.2e-15 87.8 182 40.1
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 4.6e-15 85.9 187 38.0
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 4.6e-15 85.9 135 45.9
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 1.0e-14 84.7 206 35.9
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 3.0e-14 83.2 115 47.0
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 5.1e-14 82.4 193 33.7
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 7.4e-13 78.6 123 44.7
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 1.6e-12 77.4 183 34.4
QL11p039511 Quercus lobata HOM05D007616 ORTHO05D008751 1.6e-12 77.4 68 63.2
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 1.6e-12 77.4 229 34.1
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 2.8e-12 76.6 263 31.2
FAN05G5322 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.8e-11 73.9 124 46.0
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 9.0e-11 71.6 108 45.4
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 2.6e-10 70.1 93 46.2
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 2.6e-10 70.1 93 46.2
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 5.9e-10 68.9 224 32.1
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 1.7e-09 67.4 93 49.5
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 2.2e-09 67.0 85 54.1
Lsat_1_v5_gn_7_76421 Lactuca sativa HOM05D007616 ORTHO05D008751 3.8e-09 66.2 138 40.6
BraA09t37484Z Brassica rapa HOM05D012662 ORTHO05D008751 6.5e-09 65.5 124 42.7
Hma1.2p1_1108F.1_g257940 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 6.5e-09 65.5 110 42.7
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.4e-08 64.3 197 33.5
Sp2g05500 Schrenkiella parvula HOM05D012662 ORTHO05D008751 3.2e-08 63.2 105 44.8
Ciclev10003995m.g Citrus clementina HOM05D007616 ORTHO05D008751 2.7e-07 60.1 33 87.9
Rhsim07G0246900 Rhododendron simsii HOM05D002661 ORTHO05D002786 1.8e-06 57.4 114 37.7
BcaC04g22113 Brassica carinata HOM05D012662 ORTHO05D008751 2.3e-06 57.0 99 44.4
C09p23200 Brassica napus HOM05D012662 ORTHO05D008751 2.3e-06 57.0 99 44.4
BolC9t55239H Brassica oleracea HOM05D012662 ORTHO05D008751 2.3e-06 57.0 99 44.4
COL.COLO4_26155 Corchorus olitorius HOM05D002661 ORTHO05D002786 5.1e-06 55.8 111 35.1
Dinv40084 Davidia involucrata HOM05D002661 ORTHO05D002786 5.1e-06 55.8 114 38.6
Os12g0182100 Oryza sativa ssp. japonica HOM05D052999 ORTHO05D049891 5.1e-06 55.8 196 29.1
Nitab4.5_0000337g0140 Nicotiana tabacum HOM05D002661 ORTHO05D002786 8.8e-06 55.1 114 37.7
Peaxi162Scf00034g02717 Petunia axillaris HOM05D002661 ORTHO05D002786 8.8e-06 55.1 120 37.5


User provided reference genes

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